RNA–Protein interactions for RNA: ENST00000438581.6

TMEM39A-202, Transcript of transmembrane protein 39A, humanhuman

TSL 1 (best)

Gene TMEM39A, Length 4,393 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-202ENST00000438581 RRAGBQ5VZM2 374 aa9.21□□□□□ -0.94
TMEM39A-202ENST00000438581 AOPEPQ8N6M6 819 aa9.21□□□□□ -0.94
TMEM39A-202ENST00000438581 CAGE1Q8TC20 777 aa9.21□□□□□ -0.94
TMEM39A-202ENST00000438581 SEPT11Q9NVA2 429 aaKnown RBP9.21□□□□□ -0.94
TMEM39A-202ENST00000438581 MEGF6O75095 1541 aa9.21□□□□□ -0.94
TMEM39A-202ENST00000438581 SIGLEC1Q9BZZ2 1709 aa9.21□□□□□ -0.94
TMEM39A-202ENST00000438581 TCP10L2B9ZVM9 353 aa9.21□□□□□ -0.94
TMEM39A-202ENST00000438581 EIF3JO75822 258 aaKnown RBP9.21□□□□□ -0.94
TMEM39A-202ENST00000438581 PDIA3P30101 505 aaKnown RBP9.21□□□□□ -0.94
TMEM39A-202ENST00000438581 MTIF2P46199 727 aaKnown RBP9.21□□□□□ -0.94
TMEM39A-202ENST00000438581 STX17P56962 302 aa9.21□□□□□ -0.94
TMEM39A-202ENST00000438581 KRI1Q8N9T8 703 aaKnown RBP9.21□□□□□ -0.94
TMEM39A-202ENST00000438581 FANCBQ8NB91 859 aa9.21□□□□□ -0.94
TMEM39A-202ENST00000438581 LEO1Q8WVC0 666 aaPredicted RBP9.21□□□□□ -0.94
TMEM39A-202ENST00000438581 CCDC97Q96F63 343 aaPredicted RBP9.21□□□□□ -0.94
TMEM39A-202ENST00000438581 ZNF274Q96GC6 653 aaPredicted RBP9.21□□□□□ -0.94
TMEM39A-202ENST00000438581 USP32Q8NFA0 1604 aa9.21□□□□□ -0.94
TMEM39A-202ENST00000438581 PRDX5P30044 214 aa9.2□□□□□ -0.94
TMEM39A-202ENST00000438581 SCRN1Q12765 414 aa9.2□□□□□ -0.94
TMEM39A-202ENST00000438581 NECTIN1Q15223 517 aa9.2□□□□□ -0.94
TMEM39A-202ENST00000438581 LONRF3Q496Y0 759 aa9.2□□□□□ -0.94
TMEM39A-202ENST00000438581 RILPL1Q5EBL4 403 aa9.2□□□□□ -0.94
TMEM39A-202ENST00000438581 TCERG1LQ5VWI1 586 aa9.2□□□□□ -0.94
TMEM39A-202ENST00000438581 DTHD1Q6ZMT9 781 aa9.2□□□□□ -0.94
TMEM39A-202ENST00000438581 FAM200AQ8TCP9 573 aa9.2□□□□□ -0.94
TMEM39A-202ENST00000438581 TRMT1Q9NXH9 659 aaKnown RBP9.2□□□□□ -0.94
TMEM39A-202ENST00000438581 ASIC1P78348 528 aa9.2□□□□□ -0.94
TMEM39A-202ENST00000438581 KRBA2Q6ZNG9 492 aa9.2□□□□□ -0.94
TMEM39A-202ENST00000438581 CPXCR1Q8N123 301 aa9.2□□□□□ -0.94
TMEM39A-202ENST00000438581 PNMA1Q8ND90 353 aa9.2□□□□□ -0.94
TMEM39A-202ENST00000438581 ERCC4Q92889 916 aaPredicted RBP9.2□□□□□ -0.94
TMEM39A-202ENST00000438581 ZSCAN10Q96SZ4 725 aaPredicted RBP9.2□□□□□ -0.94
TMEM39A-202ENST00000438581 CWC15Q9P013 229 aaKnown RBP9.2□□□□□ -0.94
TMEM39A-202ENST00000438581 MTMR6Q9Y217 621 aa9.2□□□□□ -0.94
TMEM39A-202ENST00000438581 CLRN2A0PK11 232 aa9.2□□□□□ -0.94
TMEM39A-202ENST00000438581 PFKFB2O60825 505 aa9.2□□□□□ -0.94
TMEM39A-202ENST00000438581 RAD17O75943 681 aa9.2□□□□□ -0.94
TMEM39A-202ENST00000438581 LARGE1O95461 756 aa9.2□□□□□ -0.94
TMEM39A-202ENST00000438581 EN1Q05925 392 aaPredicted RBP9.2□□□□□ -0.94
TMEM39A-202ENST00000438581 ODF2Q5BJF6 829 aa9.2□□□□□ -0.94
TMEM39A-202ENST00000438581 ATG9AQ7Z3C6 839 aa9.2□□□□□ -0.94
TMEM39A-202ENST00000438581 LRRC47Q8N1G4 583 aaKnown RBP9.2□□□□□ -0.94
TMEM39A-202ENST00000438581 LINC00116Q8NCU8 138 aa9.2□□□□□ -0.94
TMEM39A-202ENST00000438581 TSG101Q99816 390 aa9.2□□□□□ -0.94
TMEM39A-202ENST00000438581 ZNF408Q9H9D4 720 aa9.2□□□□□ -0.94
TMEM39A-202ENST00000438581 LMBRD1Q9NUN5 540 aa9.2□□□□□ -0.94
TMEM39A-202ENST00000438581 PKD2L1Q9P0L9 805 aa9.2□□□□□ -0.94
TMEM39A-202ENST00000438581 CDHR2Q9BYE9 1310 aa9.2□□□□□ -0.94
TMEM39A-202ENST00000438581 RABL6Q3YEC7 729 aaPredicted RBP9.19□□□□□ -0.94
TMEM39A-202ENST00000438581 TRIM47Q96LD4 638 aa9.19□□□□□ -0.94
TMEM39A-202ENST00000438581 USP17L8P0C7I0 530 aa9.19□□□□□ -0.94
TMEM39A-202ENST00000438581 MRPL12P52815 198 aaKnown RBP9.19□□□□□ -0.94
TMEM39A-202ENST00000438581 SP4Q02446 784 aa9.19□□□□□ -0.94
TMEM39A-202ENST00000438581 MECOMQ03112 1051 aa9.19□□□□□ -0.94
TMEM39A-202ENST00000438581 NKX1-1Q15270 411 aaPredicted RBP9.19□□□□□ -0.94
TMEM39A-202ENST00000438581 ITFG2Q969R8 447 aa9.19□□□□□ -0.94
TMEM39A-202ENST00000438581 INCENPQ9NQS7 918 aa9.19□□□□□ -0.94
TMEM39A-202ENST00000438581 CPDO75976 1380 aa9.19□□□□□ -0.94
TMEM39A-202ENST00000438581 SPATA31A6Q5VVP1 1343 aa9.19□□□□□ -0.94
TMEM39A-202ENST00000438581 CCDC172P0C7W6 258 aa9.19□□□□□ -0.94
TMEM39A-202ENST00000438581 MCCD1P59942 119 aaPredicted RBP9.19□□□□□ -0.94
TMEM39A-202ENST00000438581 TRAF1Q13077 416 aa9.19□□□□□ -0.94
TMEM39A-202ENST00000438581 USH1GQ495M9 461 aa9.19□□□□□ -0.94
TMEM39A-202ENST00000438581 KRT79Q5XKE5 535 aa9.19□□□□□ -0.94
TMEM39A-202ENST00000438581 RPAINQ86UA6 219 aa9.19□□□□□ -0.94
TMEM39A-202ENST00000438581 SCLT1Q96NL6 688 aa9.19□□□□□ -0.94
TMEM39A-202ENST00000438581 ATP8A2Q9NTI2 1148 aa9.19□□□□□ -0.94
TMEM39A-202ENST00000438581 EXOC1Q9NV70 894 aa9.19□□□□□ -0.94
TMEM39A-202ENST00000438581 COL3A1P02461 1466 aaPredicted RBP9.19□□□□□ -0.94
TMEM39A-202ENST00000438581 N4BP3O15049 544 aa9.19□□□□□ -0.94
TMEM39A-202ENST00000438581 C21orf2O43822 256 aa9.19□□□□□ -0.94
TMEM39A-202ENST00000438581 NF2P35240 595 aa9.19□□□□□ -0.94
TMEM39A-202ENST00000438581 CCDC40Q4G0X9 1142 aa9.19□□□□□ -0.94
TMEM39A-202ENST00000438581 FKBP15Q5T1M5 1219 aa9.19□□□□□ -0.94
TMEM39A-202ENST00000438581 LUZP1Q86V48 1076 aa9.19□□□□□ -0.94
TMEM39A-202ENST00000438581 MTA3Q9BTC8 594 aa9.19□□□□□ -0.94
TMEM39A-202ENST00000438581 REREQ9P2R6 1566 aa9.18□□□□□ -0.94
TMEM39A-202ENST00000438581 BTBD18B2RXH4 712 aa9.18□□□□□ -0.94
TMEM39A-202ENST00000438581 SEMA3EO15041 775 aa9.18□□□□□ -0.94
TMEM39A-202ENST00000438581 PPP1R12BO60237 982 aaPredicted RBP9.18□□□□□ -0.94
TMEM39A-202ENST00000438581 CAMTA2O94983 1202 aa9.18□□□□□ -0.94
TMEM39A-202ENST00000438581 FAM160A1Q05DH4 1040 aa9.18□□□□□ -0.94
TMEM39A-202ENST00000438581 ARHGAP29Q52LW3 1261 aa9.18□□□□□ -0.94
TMEM39A-202ENST00000438581 ARHGAP27Q6ZUM4 889 aa9.18□□□□□ -0.94
TMEM39A-202ENST00000438581 ZNF771Q7L3S4 317 aaPredicted RBP9.18□□□□□ -0.94
TMEM39A-202ENST00000438581 CACNA2D4Q7Z3S7 1137 aa9.18□□□□□ -0.94
TMEM39A-202ENST00000438581 ANKRD23Q86SG2 305 aa9.18□□□□□ -0.94
TMEM39A-202ENST00000438581 USP28Q96RU2 1077 aa9.18□□□□□ -0.94
TMEM39A-202ENST00000438581 STRBPQ96SI9 672 aaKnown RBP9.18□□□□□ -0.94
TMEM39A-202ENST00000438581 ARHGEF10LQ9HCE6 1279 aa9.18□□□□□ -0.94
TMEM39A-202ENST00000438581 ZSWIM5Q9P217 1185 aa9.18□□□□□ -0.94
TMEM39A-202ENST00000438581 FRMPD2Q68DX3 1309 aaPredicted RBP9.18□□□□□ -0.94
TMEM39A-202ENST00000438581 WDHD1O75717 1129 aaPredicted RBP9.18□□□□□ -0.94
TMEM39A-202ENST00000438581 CCDC181Q5TID7 509 aa9.18□□□□□ -0.94
TMEM39A-202ENST00000438581 APOA5Q6Q788 366 aa9.18□□□□□ -0.94
TMEM39A-202ENST00000438581 ERMNQ8TAM6 284 aa9.18□□□□□ -0.94
TMEM39A-202ENST00000438581 STAMQ92783 540 aa9.18□□□□□ -0.94
TMEM39A-202ENST00000438581 DYNLL2Q96FJ2 89 aa9.18□□□□□ -0.94
TMEM39A-202ENST00000438581 TIGD1Q96MW7 591 aa9.18□□□□□ -0.94
TMEM39A-202ENST00000438581 NUP88Q99567 741 aaPredicted RBP9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms