RNA–Protein interactions for RNA: ENST00000433541.1

TREX1-201, Transcript of three prime repair exonuclease 1, humanhuman

TSL 1 (best) BASIC

Gene TREX1, Length 1,105 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1-201ENST00000433541 VPS53Q5VIR6 699 aa18.51■□□□□ 0.55
TREX1-201ENST00000433541 CCDC84Q86UT8 332 aaPredicted RBP18.51■□□□□ 0.55
TREX1-201ENST00000433541 SLC44A5Q8NCS7 719 aa18.51■□□□□ 0.55
TREX1-201ENST00000433541 CCL15-CCL14A0A0B4J2E2 113 aa18.5■□□□□ 0.55
TREX1-201ENST00000433541 TRIM75PA6NK02 468 aa18.5■□□□□ 0.55
TREX1-201ENST00000433541 RAB3GAP1Q15042 981 aa18.5■□□□□ 0.55
TREX1-201ENST00000433541 CCL15Q16663 113 aa18.5■□□□□ 0.55
TREX1-201ENST00000433541 ABCB5Q2M3G0 1257 aa18.5■□□□□ 0.55
TREX1-201ENST00000433541 BMP2KLQ5H9B9 411 aa18.5■□□□□ 0.55
TREX1-201ENST00000433541 OTUD7BQ6GQQ9 843 aa18.5■□□□□ 0.55
TREX1-201ENST00000433541 CASC1Q6TDU7 716 aa18.5■□□□□ 0.55
TREX1-201ENST00000433541 METTL16Q86W50 562 aaKnown RBP18.5■□□□□ 0.55
TREX1-201ENST00000433541 MKNK2Q9HBH9 465 aa18.5■□□□□ 0.55
TREX1-201ENST00000433541 AS3MTQ9HBK9 375 aa18.5■□□□□ 0.55
TREX1-201ENST00000433541 PCNTO95613 3336 aa18.49■□□□□ 0.55
TREX1-201ENST00000433541 PTPRFP10586 1907 aa18.49■□□□□ 0.55
TREX1-201ENST00000433541 USP17L5A8MUK1 530 aa18.49■□□□□ 0.55
TREX1-201ENST00000433541 GH2P01242 217 aa18.49■□□□□ 0.55
TREX1-201ENST00000433541 CETPP11597 493 aa18.49■□□□□ 0.55
TREX1-201ENST00000433541 CHMLP26374 656 aa18.49■□□□□ 0.55
TREX1-201ENST00000433541 SHMT1P34896 483 aa18.49■□□□□ 0.55
TREX1-201ENST00000433541 SBK1Q52WX2 424 aa18.49■□□□□ 0.55
TREX1-201ENST00000433541 ZNF287Q9HBT7 754 aa18.49■□□□□ 0.55
TREX1-201ENST00000433541 ZBTB21Q9ULJ3 1066 aa18.49■□□□□ 0.55
TREX1-201ENST00000433541 HSPD1P10809 573 aaKnown RBP18.48■□□□□ 0.55
TREX1-201ENST00000433541 CDK8P49336 464 aa18.48■□□□□ 0.55
TREX1-201ENST00000433541 INHBEP58166 350 aa18.48■□□□□ 0.55
TREX1-201ENST00000433541 PPARAQ07869 468 aa18.48■□□□□ 0.55
TREX1-201ENST00000433541 RRP1BQ14684 758 aaKnown RBP18.48■□□□□ 0.55
TREX1-201ENST00000433541 TATDN1Q6P1N9 297 aa18.48■□□□□ 0.55
TREX1-201ENST00000433541 GADL1Q6ZQY3 521 aa18.48■□□□□ 0.55
TREX1-201ENST00000433541 C16orf86Q6ZW13 317 aa18.48■□□□□ 0.55
TREX1-201ENST00000433541 FEZ1Q99689 392 aa18.48■□□□□ 0.55
TREX1-201ENST00000433541 TOMM22Q9NS69 142 aa18.48■□□□□ 0.55
TREX1-201ENST00000433541 RAD50Q92878 1312 aa18.48■□□□□ 0.55
TREX1-201ENST00000433541 SMIM22K7EJ46 135 aa18.47■□□□□ 0.55
TREX1-201ENST00000433541 TRPA1O75762 1119 aa18.47■□□□□ 0.55
TREX1-201ENST00000433541 GABPAQ06546 454 aa18.47■□□□□ 0.55
TREX1-201ENST00000433541 PDE4BQ07343 736 aa18.47■□□□□ 0.55
TREX1-201ENST00000433541 SHROOM1Q2M3G4 852 aaPredicted RBP18.47■□□□□ 0.55
TREX1-201ENST00000433541 TBC1D2Q9BYX2 928 aa18.47■□□□□ 0.55
TREX1-201ENST00000433541 GINM1Q9NU53 330 aa18.47■□□□□ 0.55
TREX1-201ENST00000433541 WBP1LQ9NX94 342 aa18.47■□□□□ 0.55
TREX1-201ENST00000433541 TSKSQ9UJT2 592 aa18.47■□□□□ 0.55
TREX1-201ENST00000433541 LAMA4Q16363 1823 aa18.46■□□□□ 0.55
TREX1-201ENST00000433541 CA12O43570 354 aa18.46■□□□□ 0.55
TREX1-201ENST00000433541 CTDSPL2Q05D32 466 aa18.46■□□□□ 0.55
TREX1-201ENST00000433541 SPP2Q13103 211 aa18.46■□□□□ 0.55
TREX1-201ENST00000433541 KIAA1211Q6ZU35 1233 aa18.46■□□□□ 0.55
TREX1-201ENST00000433541 ZNF444Q8N0Y2 327 aaPredicted RBP18.46■□□□□ 0.55
TREX1-201ENST00000433541 ZNF280CQ8ND82 737 aa18.46■□□□□ 0.55
TREX1-201ENST00000433541 TAOK2Q9UL54 1235 aa18.46■□□□□ 0.55
TREX1-201ENST00000433541 PRDM1O75626 825 aa18.45■□□□□ 0.54
TREX1-201ENST00000433541 ALDH1A1P00352 501 aa18.45■□□□□ 0.54
TREX1-201ENST00000433541 FGAP02671 866 aa18.45■□□□□ 0.54
TREX1-201ENST00000433541 TM4SF4P48230 202 aa18.45■□□□□ 0.54
TREX1-201ENST00000433541 HAND2P61296 217 aa18.45■□□□□ 0.54
TREX1-201ENST00000433541 ATP2B2Q01814 1243 aa18.45■□□□□ 0.54
TREX1-201ENST00000433541 IFNL1Q8IU54 200 aa18.45■□□□□ 0.54
TREX1-201ENST00000433541 BRI3BPQ8WY22 251 aa18.45■□□□□ 0.54
TREX1-201ENST00000433541 CCDC17Q96LX7 622 aa18.45■□□□□ 0.54
TREX1-201ENST00000433541 RNF186Q9NXI6 227 aa18.45■□□□□ 0.54
TREX1-201ENST00000433541 AFG3L2Q9Y4W6 797 aa18.45■□□□□ 0.54
TREX1-201ENST00000433541 ROBO3Q96MS0 1386 aa18.44■□□□□ 0.54
TREX1-201ENST00000433541 CXCL11O14625 94 aa18.44■□□□□ 0.54
TREX1-201ENST00000433541 FOXN1O15353 648 aa18.44■□□□□ 0.54
TREX1-201ENST00000433541 FOXP2O15409 715 aa18.44■□□□□ 0.54
TREX1-201ENST00000433541 CDC45O75419 566 aa18.44■□□□□ 0.54
TREX1-201ENST00000433541 AKR1B1P15121 316 aa18.44■□□□□ 0.54
TREX1-201ENST00000433541 JAG1P78504 1218 aa18.44■□□□□ 0.54
TREX1-201ENST00000433541 SEPT2Q15019 361 aa18.44■□□□□ 0.54
TREX1-201ENST00000433541 ALX1Q15699 326 aa18.44■□□□□ 0.54
TREX1-201ENST00000433541 ZYXQ15942 572 aaKnown RBP18.44■□□□□ 0.54
TREX1-201ENST00000433541 TMEM179Q6ZVK1 233 aa18.44■□□□□ 0.54
TREX1-201ENST00000433541 MS4A4AQ96JQ5 239 aa18.44■□□□□ 0.54
TREX1-201ENST00000433541 TMOD4Q9NZQ9 345 aa18.44■□□□□ 0.54
TREX1-201ENST00000433541 KCNH4Q9UQ05 1017 aa18.44■□□□□ 0.54
TREX1-201ENST00000433541 MYH4Q9Y623 1939 aa18.44■□□□□ 0.54
TREX1-201ENST00000433541 IGF2BP3O00425 579 aaKnown RBP eCLIP18.43■□□□□ 0.54
TREX1-201ENST00000433541 ZNF213O14771 459 aa18.43■□□□□ 0.54
TREX1-201ENST00000433541 HMGCS2P54868 508 aa18.43■□□□□ 0.54
TREX1-201ENST00000433541 MTMR2Q13614 643 aa18.43■□□□□ 0.54
TREX1-201ENST00000433541 RRP12Q5JTH9 1297 aaKnown RBP18.43■□□□□ 0.54
TREX1-201ENST00000433541 FASTKD5Q7L8L6 764 aaKnown RBP18.43■□□□□ 0.54
TREX1-201ENST00000433541 DSCC1Q9BVC3 393 aa18.43■□□□□ 0.54
TREX1-201ENST00000433541 CTNNA3Q9UI47 895 aa18.43■□□□□ 0.54
TREX1-201ENST00000433541 USP17L10C9JJH3 530 aa18.42■□□□□ 0.54
TREX1-201ENST00000433541 RAD21O60216 631 aa18.42■□□□□ 0.54
TREX1-201ENST00000433541 TBC1D8O95759 1140 aa18.42■□□□□ 0.54
TREX1-201ENST00000433541 TSPY3P0CV98 308 aa18.42■□□□□ 0.54
TREX1-201ENST00000433541 TSPY8P0CW00 308 aa18.42■□□□□ 0.54
TREX1-201ENST00000433541 CTCFP49711 727 aaPredicted RBP18.42■□□□□ 0.54
TREX1-201ENST00000433541 TAF1CQ15572 869 aaPredicted RBP18.42■□□□□ 0.54
TREX1-201ENST00000433541 IMMTQ16891 758 aaKnown RBP18.42■□□□□ 0.54
TREX1-201ENST00000433541 IL25Q9H293 177 aa18.42■□□□□ 0.54
TREX1-201ENST00000433541 ARHGEF10LQ9HCE6 1279 aa18.42■□□□□ 0.54
TREX1-201ENST00000433541 SAGE1Q9NXZ1 904 aa18.42■□□□□ 0.54
TREX1-201ENST00000433541 ZMYM6O95789 1325 aa18.42■□□□□ 0.54
TREX1-201ENST00000433541 LOC285556D6RIA3 1793 aa18.42■□□□□ 0.54
TREX1-201ENST00000433541 A0A0G2JLL6 359 aaPredicted RBP18.41■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms