RNA–Protein interactions for RNA: ENST00000428776.1

HMGB3P4-201, Transcript of high mobility group box 3 pseudogene 4, humanhuman

BASIC

Gene HMGB3P4, Length 514 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P4-201ENST00000428776 APOA5Q6Q788 366 aa14.91□□□□□ -0.02
HMGB3P4-201ENST00000428776 SYNE3Q6ZMZ3 975 aa14.91□□□□□ -0.02
HMGB3P4-201ENST00000428776 FAM83AQ86UY5 434 aa14.91□□□□□ -0.02
HMGB3P4-201ENST00000428776 FOXP4Q8IVH2 680 aaPredicted RBP14.91□□□□□ -0.02
HMGB3P4-201ENST00000428776 LLPHQ9BRT6 129 aaKnown RBP14.91□□□□□ -0.02
HMGB3P4-201ENST00000428776 NAP1L2Q9ULW6 460 aaPredicted RBP14.91□□□□□ -0.02
HMGB3P4-201ENST00000428776 SMC3Q9UQE7 1217 aa14.91□□□□□ -0.02
HMGB3P4-201ENST00000428776 SHTN1A0MZ66 631 aa14.9□□□□□ -0.02
HMGB3P4-201ENST00000428776 CLRN2A0PK11 232 aa14.9□□□□□ -0.02
HMGB3P4-201ENST00000428776 DDTLA6NHG4 134 aaPredicted RBP14.9□□□□□ -0.02
HMGB3P4-201ENST00000428776 GOLGA8BA8MQT2 603 aa14.9□□□□□ -0.02
HMGB3P4-201ENST00000428776 TCP10L2B9ZVM9 353 aa14.9□□□□□ -0.02
HMGB3P4-201ENST00000428776 DHX16O60231 1041 aaKnown RBP14.9□□□□□ -0.02
HMGB3P4-201ENST00000428776 TSPY3P0CV98 308 aa14.9□□□□□ -0.02
HMGB3P4-201ENST00000428776 TSPY8P0CW00 308 aa14.9□□□□□ -0.02
HMGB3P4-201ENST00000428776 TNNI2P48788 182 aa14.9□□□□□ -0.02
HMGB3P4-201ENST00000428776 RCAN1P53805 252 aa14.9□□□□□ -0.02
HMGB3P4-201ENST00000428776 SCRN1Q12765 414 aa14.9□□□□□ -0.02
HMGB3P4-201ENST00000428776 NBPF9Q3BBW0 867 aa14.9□□□□□ -0.02
HMGB3P4-201ENST00000428776 C9orf131Q5VYM1 1079 aa14.9□□□□□ -0.02
HMGB3P4-201ENST00000428776 SH3BP5LQ7L8J4 393 aa14.9□□□□□ -0.02
HMGB3P4-201ENST00000428776 METTL16Q86W50 562 aaKnown RBP14.9□□□□□ -0.02
HMGB3P4-201ENST00000428776 ZSCAN29Q8IWY8 852 aaPredicted RBP14.9□□□□□ -0.02
HMGB3P4-201ENST00000428776 CRACR2BQ8N4Y2 399 aaPredicted RBP14.9□□□□□ -0.02
HMGB3P4-201ENST00000428776 ENAHQ8N8S7 591 aaPredicted RBP14.9□□□□□ -0.02
HMGB3P4-201ENST00000428776 SLC44A5Q8NCS7 719 aa14.9□□□□□ -0.02
HMGB3P4-201ENST00000428776 NEDD1Q8NHV4 660 aa14.9□□□□□ -0.02
HMGB3P4-201ENST00000428776 SENP2Q9HC62 589 aa14.9□□□□□ -0.02
HMGB3P4-201ENST00000428776 GPRC5DQ9NZD1 345 aa14.9□□□□□ -0.02
HMGB3P4-201ENST00000428776 HPS5Q9UPZ3 1129 aa14.9□□□□□ -0.02
HMGB3P4-201ENST00000428776 SLC12A7Q9Y666 1083 aa14.9□□□□□ -0.02
HMGB3P4-201ENST00000428776 CNTNAP1P78357 1384 aa14.89□□□□□ -0.03
HMGB3P4-201ENST00000428776 ZBTB43O43298 467 aa14.89□□□□□ -0.03
HMGB3P4-201ENST00000428776 IFIT1BQ5T764 474 aaKnown RBP14.89□□□□□ -0.03
HMGB3P4-201ENST00000428776 RBM26Q5T8P6 1007 aaKnown RBP14.89□□□□□ -0.03
HMGB3P4-201ENST00000428776 DGKHQ86XP1 1220 aa14.89□□□□□ -0.03
HMGB3P4-201ENST00000428776 ANKS1AQ92625 1134 aa14.89□□□□□ -0.03
HMGB3P4-201ENST00000428776 TRIM34Q9BYJ4 488 aa14.89□□□□□ -0.03
HMGB3P4-201ENST00000428776 VEZTQ9HBM0 779 aa14.89□□□□□ -0.03
HMGB3P4-201ENST00000428776 SCN4AP35499 1836 aa14.89□□□□□ -0.03
HMGB3P4-201ENST00000428776 ATAD5Q96QE3 1844 aa14.89□□□□□ -0.03
HMGB3P4-201ENST00000428776 ZC3H4Q9UPT8 1303 aaKnown RBP14.89□□□□□ -0.03
HMGB3P4-201ENST00000428776 NID2Q14112 1375 aa14.88□□□□□ -0.03
HMGB3P4-201ENST00000428776 PLIN4Q96Q06 1357 aa14.88□□□□□ -0.03
HMGB3P4-201ENST00000428776 CALM1P0DP23 149 aa14.88□□□□□ -0.03
HMGB3P4-201ENST00000428776 CALM2P0DP24 149 aa14.88□□□□□ -0.03
HMGB3P4-201ENST00000428776 CALM3P0DP25 149 aa14.88□□□□□ -0.03
HMGB3P4-201ENST00000428776 PDIA4P13667 645 aaKnown RBP14.88□□□□□ -0.03
HMGB3P4-201ENST00000428776 SHMT1P34896 483 aa14.88□□□□□ -0.03
HMGB3P4-201ENST00000428776 METAP2P50579 478 aaKnown RBP eCLIP14.88□□□□□ -0.03
HMGB3P4-201ENST00000428776 CCT2P78371 535 aaKnown RBP14.88□□□□□ -0.03
HMGB3P4-201ENST00000428776 NUCB2P80303 420 aa14.88□□□□□ -0.03
HMGB3P4-201ENST00000428776 TNFAIP1Q13829 316 aa14.88□□□□□ -0.03
HMGB3P4-201ENST00000428776 PPP2R5BQ15173 497 aa14.88□□□□□ -0.03
HMGB3P4-201ENST00000428776 KIF4BQ2VIQ3 1234 aa14.88□□□□□ -0.03
HMGB3P4-201ENST00000428776 SAMD7Q7Z3H4 446 aa14.88□□□□□ -0.03
HMGB3P4-201ENST00000428776 ZNF654Q8IZM8 581 aa14.88□□□□□ -0.03
HMGB3P4-201ENST00000428776 CCDC17Q96LX7 622 aa14.88□□□□□ -0.03
HMGB3P4-201ENST00000428776 IL17RBQ9NRM6 502 aa14.88□□□□□ -0.03
HMGB3P4-201ENST00000428776 NMT2O60551 498 aa14.87□□□□□ -0.03
HMGB3P4-201ENST00000428776 EGFRP00533 1210 aa14.87□□□□□ -0.03
HMGB3P4-201ENST00000428776 GJB2P29033 226 aa14.87□□□□□ -0.03
HMGB3P4-201ENST00000428776 TBC1D10BQ4KMP7 808 aaPredicted RBP14.87□□□□□ -0.03
HMGB3P4-201ENST00000428776 RCSD1Q6JBY9 416 aa14.87□□□□□ -0.03
HMGB3P4-201ENST00000428776 DPY19L2Q6NUT2 758 aa14.87□□□□□ -0.03
HMGB3P4-201ENST00000428776 TATDN1Q6P1N9 297 aa14.87□□□□□ -0.03
HMGB3P4-201ENST00000428776 CATIPQ7Z7H3 387 aa14.87□□□□□ -0.03
HMGB3P4-201ENST00000428776 SMARCC2Q8TAQ2 1214 aa14.87□□□□□ -0.03
HMGB3P4-201ENST00000428776 CSRNP1Q96S65 589 aa14.87□□□□□ -0.03
HMGB3P4-201ENST00000428776 NCOA5Q9HCD5 579 aaKnown RBP14.87□□□□□ -0.03
HMGB3P4-201ENST00000428776 HERC5Q9UII4 1024 aaKnown RBP14.87□□□□□ -0.03
HMGB3P4-201ENST00000428776 CCDC196A0A1B0GTZ2 297 aa14.86□□□□□ -0.03
HMGB3P4-201ENST00000428776 GOLGA8AA7E2F4 631 aa14.86□□□□□ -0.03
HMGB3P4-201ENST00000428776 CPLX1O14810 134 aa14.86□□□□□ -0.03
HMGB3P4-201ENST00000428776 DDNO94850 711 aaPredicted RBP14.86□□□□□ -0.03
HMGB3P4-201ENST00000428776 PDCP20941 246 aa14.86□□□□□ -0.03
HMGB3P4-201ENST00000428776 LMOD1P29536 600 aaPredicted RBP14.86□□□□□ -0.03
HMGB3P4-201ENST00000428776 HMGN5P82970 282 aaKnown RBP14.86□□□□□ -0.03
HMGB3P4-201ENST00000428776 CPLX2Q6PUV4 134 aaKnown RBP14.86□□□□□ -0.03
HMGB3P4-201ENST00000428776 NSUN7Q8NE18 718 aaKnown RBP14.86□□□□□ -0.03
HMGB3P4-201ENST00000428776 TBC1D12O60347 775 aa14.85□□□□□ -0.03
HMGB3P4-201ENST00000428776 CDKL5O76039 1030 aa14.85□□□□□ -0.03
HMGB3P4-201ENST00000428776 DDAH1O94760 285 aa14.85□□□□□ -0.03
HMGB3P4-201ENST00000428776 CTDNEP1O95476 244 aa14.85□□□□□ -0.03
HMGB3P4-201ENST00000428776 NOVP48745 357 aa14.85□□□□□ -0.03
HMGB3P4-201ENST00000428776 RAB3GAP1Q15042 981 aa14.85□□□□□ -0.03
HMGB3P4-201ENST00000428776 CERKLQ49MI3 558 aaPredicted RBP14.85□□□□□ -0.03
HMGB3P4-201ENST00000428776 PPP4R3BQ5MIZ7 849 aa14.85□□□□□ -0.03
HMGB3P4-201ENST00000428776 MICU3Q86XE3 530 aa14.85□□□□□ -0.03
HMGB3P4-201ENST00000428776 FANCBQ8NB91 859 aa14.85□□□□□ -0.03
HMGB3P4-201ENST00000428776 DNAJC18Q9H819 358 aa14.85□□□□□ -0.03
HMGB3P4-201ENST00000428776 KAT14Q9H8E8 782 aa14.85□□□□□ -0.03
HMGB3P4-201ENST00000428776 PGAP2Q9UHJ9 254 aa14.85□□□□□ -0.03
HMGB3P4-201ENST00000428776 HACL1Q9UJ83 578 aa14.85□□□□□ -0.03
HMGB3P4-201ENST00000428776 KIF3AQ9Y496 699 aa14.85□□□□□ -0.03
HMGB3P4-201ENST00000428776 MYH15Q9Y2K3 1946 aa14.84□□□□□ -0.03
HMGB3P4-201ENST00000428776 IGKV6D-41A0A0C4DH26 115 aa14.84□□□□□ -0.03
HMGB3P4-201ENST00000428776 PTPDC1A2A3K4 754 aa14.84□□□□□ -0.03
HMGB3P4-201ENST00000428776 AKR1B1P15121 316 aa14.84□□□□□ -0.03
HMGB3P4-201ENST00000428776 EPS15P42566 896 aa14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 110.8 ms