RNA–Protein interactions for RNA: ENST00000426962.1

LINC01238-202, Transcript of long intergenic non-protein coding RNA 1238, humanhuman

TSL 2

Gene LINC01238, Length 430 nt, Biotype lincRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01238-202ENST00000426962 NBPF11Q86T75 865 aa12.99□□□□□ -0.33
LINC01238-202ENST00000426962 SMCR8Q8TEV9 937 aaPredicted RBP12.99□□□□□ -0.33
LINC01238-202ENST00000426962 SDR42E1Q8WUS8 393 aa12.99□□□□□ -0.33
LINC01238-202ENST00000426962 ATP8A2Q9NTI2 1148 aa12.99□□□□□ -0.33
LINC01238-202ENST00000426962 PNMA3Q9UL41 463 aa12.99□□□□□ -0.33
LINC01238-202ENST00000426962 ZBTB21Q9ULJ3 1066 aa12.99□□□□□ -0.33
LINC01238-202ENST00000426962 DOCK1Q14185 1865 aa12.99□□□□□ -0.33
LINC01238-202ENST00000426962 TTC41PQ6P2S7 1318 aa12.98□□□□□ -0.33
LINC01238-202ENST00000426962 MBD4O95243 580 aa12.98□□□□□ -0.33
LINC01238-202ENST00000426962 GH2P01242 217 aa12.98□□□□□ -0.33
LINC01238-202ENST00000426962 OSBPP22059 807 aa12.98□□□□□ -0.33
LINC01238-202ENST00000426962 CTGFP29279 349 aa12.98□□□□□ -0.33
LINC01238-202ENST00000426962 SHROOM1Q2M3G4 852 aaPredicted RBP12.98□□□□□ -0.33
LINC01238-202ENST00000426962 KBTBD3Q8NAB2 608 aa12.98□□□□□ -0.33
LINC01238-202ENST00000426962 ARMC5Q96C12 935 aa12.98□□□□□ -0.33
LINC01238-202ENST00000426962 TRIM47Q96LD4 638 aa12.98□□□□□ -0.33
LINC01238-202ENST00000426962 CABP5Q9NP86 173 aa12.98□□□□□ -0.33
LINC01238-202ENST00000426962 TMOD4Q9NZQ9 345 aa12.98□□□□□ -0.33
LINC01238-202ENST00000426962 ZBTB47Q9UFB7 747 aaPredicted RBP12.98□□□□□ -0.33
LINC01238-202ENST00000426962 TAOK2Q9UL54 1235 aa12.98□□□□□ -0.33
LINC01238-202ENST00000426962 PTCH2Q9Y6C5 1203 aa12.98□□□□□ -0.33
LINC01238-202ENST00000426962 FOCADQ5VW36 1801 aa12.97□□□□□ -0.33
LINC01238-202ENST00000426962 ERC2O15083 957 aa12.97□□□□□ -0.33
LINC01238-202ENST00000426962 PRKAB2O43741 272 aa12.97□□□□□ -0.33
LINC01238-202ENST00000426962 ECM2O94769 699 aaPredicted RBP12.97□□□□□ -0.33
LINC01238-202ENST00000426962 CHGBP05060 677 aa12.97□□□□□ -0.33
LINC01238-202ENST00000426962 HOXA7P31268 230 aaPredicted RBP12.97□□□□□ -0.33
LINC01238-202ENST00000426962 SHMT1P34896 483 aa12.97□□□□□ -0.33
LINC01238-202ENST00000426962 FCGRTP55899 365 aa12.97□□□□□ -0.33
LINC01238-202ENST00000426962 GABPAQ06546 454 aa12.97□□□□□ -0.33
LINC01238-202ENST00000426962 HDAC1Q13547 482 aaPredicted RBP12.97□□□□□ -0.33
LINC01238-202ENST00000426962 MTMR2Q13614 643 aa12.97□□□□□ -0.33
LINC01238-202ENST00000426962 ABCB5Q2M3G0 1257 aa12.97□□□□□ -0.33
LINC01238-202ENST00000426962 SLC9C1Q4G0N8 1177 aa12.97□□□□□ -0.33
LINC01238-202ENST00000426962 ANKRD45Q5TZF3 282 aa12.97□□□□□ -0.33
LINC01238-202ENST00000426962 GCC1Q96CN9 775 aa12.97□□□□□ -0.33
LINC01238-202ENST00000426962 PUS7LQ9H0K6 701 aaKnown RBP12.97□□□□□ -0.33
LINC01238-202ENST00000426962 SRRDQ9UH36 339 aa12.97□□□□□ -0.33
LINC01238-202ENST00000426962 CDK5RAP2Q96SN8 1893 aa12.97□□□□□ -0.33
LINC01238-202ENST00000426962 PHIPQ8WWQ0 1821 aa12.97□□□□□ -0.33
LINC01238-202ENST00000426962 GLRX3O76003 335 aaKnown RBP12.96□□□□□ -0.33
LINC01238-202ENST00000426962 ZFYP08048 801 aaPredicted RBP12.96□□□□□ -0.33
LINC01238-202ENST00000426962 GCLCP48506 637 aaPredicted RBP12.96□□□□□ -0.33
LINC01238-202ENST00000426962 RAB3GAP1Q15042 981 aa12.96□□□□□ -0.33
LINC01238-202ENST00000426962 LRRFIP1Q32MZ4 808 aaKnown RBP12.96□□□□□ -0.33
LINC01238-202ENST00000426962 TSHZ3Q63HK5 1081 aa12.96□□□□□ -0.33
LINC01238-202ENST00000426962 USP17L2Q6R6M4 530 aa12.96□□□□□ -0.33
LINC01238-202ENST00000426962 DDRGK1Q96HY6 314 aa12.96□□□□□ -0.33
LINC01238-202ENST00000426962 ASCC2Q9H1I8 757 aaPredicted RBP12.96□□□□□ -0.33
LINC01238-202ENST00000426962 SWAP70Q9UH65 585 aa12.96□□□□□ -0.33
LINC01238-202ENST00000426962 SLC4A4Q9Y6R1 1079 aa12.96□□□□□ -0.33
LINC01238-202ENST00000426962 SIPA1L1O43166 1804 aa12.96□□□□□ -0.33
LINC01238-202ENST00000426962 MYH1P12882 1939 aa12.96□□□□□ -0.34
LINC01238-202ENST00000426962 RNF113AO15541 343 aaKnown RBP12.95□□□□□ -0.34
LINC01238-202ENST00000426962 FAM110CQ1W6H9 321 aa12.95□□□□□ -0.34
LINC01238-202ENST00000426962 C12orf60Q5U649 245 aa12.95□□□□□ -0.34
LINC01238-202ENST00000426962 AMOTL1Q8IY63 956 aa12.95□□□□□ -0.34
LINC01238-202ENST00000426962 ANKRD13CQ8N6S4 541 aa12.95□□□□□ -0.34
LINC01238-202ENST00000426962 PI4K2BQ8TCG2 481 aa12.95□□□□□ -0.34
LINC01238-202ENST00000426962 ZNF333Q96JL9 665 aa12.95□□□□□ -0.34
LINC01238-202ENST00000426962 EMILIN3Q9NT22 766 aa12.95□□□□□ -0.34
LINC01238-202ENST00000426962 USP17L12C9JPN9 530 aa12.94□□□□□ -0.34
LINC01238-202ENST00000426962 USP17L21D6R901 530 aa12.94□□□□□ -0.34
LINC01238-202ENST00000426962 CYP2D6P10635 497 aa12.94□□□□□ -0.34
LINC01238-202ENST00000426962 MX1P20591 662 aa12.94□□□□□ -0.34
LINC01238-202ENST00000426962 USP14P54578 494 aa12.94□□□□□ -0.34
LINC01238-202ENST00000426962 IRX3P78415 501 aaPredicted RBP12.94□□□□□ -0.34
LINC01238-202ENST00000426962 EVX2Q03828 476 aa12.94□□□□□ -0.34
LINC01238-202ENST00000426962 RAET1EQ8TD07 263 aa12.94□□□□□ -0.34
LINC01238-202ENST00000426962 OTUD7AQ8TE49 926 aaPredicted RBP12.94□□□□□ -0.34
LINC01238-202ENST00000426962 APPBP2Q92624 585 aa12.94□□□□□ -0.34
LINC01238-202ENST00000426962 OSBP2Q969R2 916 aa12.94□□□□□ -0.34
LINC01238-202ENST00000426962 STRBPQ96SI9 672 aaKnown RBP12.94□□□□□ -0.34
LINC01238-202ENST00000426962 P2RX7Q99572 595 aaKnown RBP12.94□□□□□ -0.34
LINC01238-202ENST00000426962 TMEM106CQ9BVX2 250 aa12.94□□□□□ -0.34
LINC01238-202ENST00000426962 KIAA1683Q9H0B3 1180 aa12.94□□□□□ -0.34
LINC01238-202ENST00000426962 PTPRFP10586 1907 aa12.94□□□□□ -0.34
LINC01238-202ENST00000426962 MYPNQ86TC9 1320 aa12.93□□□□□ -0.34
LINC01238-202ENST00000426962 ATAD5Q96QE3 1844 aa12.93□□□□□ -0.34
LINC01238-202ENST00000426962 MPHOSPH10O00566 681 aaKnown RBP12.93□□□□□ -0.34
LINC01238-202ENST00000426962 GUCY1A2P33402 732 aa12.93□□□□□ -0.34
LINC01238-202ENST00000426962 SEPT2Q15019 361 aa12.93□□□□□ -0.34
LINC01238-202ENST00000426962 GIMAP6Q6P9H5 292 aa12.93□□□□□ -0.34
LINC01238-202ENST00000426962 CTR9Q6PD62 1173 aa12.93□□□□□ -0.34
LINC01238-202ENST00000426962 SH3TC2Q8TF17 1288 aa12.93□□□□□ -0.34
LINC01238-202ENST00000426962 DYNLL2Q96FJ2 89 aa12.93□□□□□ -0.34
LINC01238-202ENST00000426962 C12orf42Q96LP6 360 aa12.93□□□□□ -0.34
LINC01238-202ENST00000426962 FEZ1Q99689 392 aa12.93□□□□□ -0.34
LINC01238-202ENST00000426962 RWDD1Q9H446 243 aaPredicted RBP12.93□□□□□ -0.34
LINC01238-202ENST00000426962 HTTP42858 3142 aa12.93□□□□□ -0.34
LINC01238-202ENST00000426962 SALL3Q9BXA9 1300 aa12.92□□□□□ -0.34
LINC01238-202ENST00000426962 CYP2D7A0A087X1C5 515 aa12.92□□□□□ -0.34
LINC01238-202ENST00000426962 POTEFA5A3E0 1075 aa12.92□□□□□ -0.34
LINC01238-202ENST00000426962 GSG1L2A8MUP6 293 aa12.92□□□□□ -0.34
LINC01238-202ENST00000426962 TNPO2O14787 897 aaKnown RBP12.92□□□□□ -0.34
LINC01238-202ENST00000426962 GNAT2P19087 354 aa12.92□□□□□ -0.34
LINC01238-202ENST00000426962 GRK4P32298 578 aa12.92□□□□□ -0.34
LINC01238-202ENST00000426962 CDK8P49336 464 aa12.92□□□□□ -0.34
LINC01238-202ENST00000426962 HERVK_113P62684 666 aa12.92□□□□□ -0.34
LINC01238-202ENST00000426962 PRKCZQ05513 592 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms