RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 IL1RAPL2Q9NP60 686 aa14.06□□□□□ -0.16
SQSTM1-203ENST00000422245 TMOD4Q9NZQ9 345 aa14.06□□□□□ -0.16
SQSTM1-203ENST00000422245 SAP30BPQ9UHR5 308 aaKnown RBP14.06□□□□□ -0.16
SQSTM1-203ENST00000422245 ZBTB21Q9ULJ3 1066 aa14.06□□□□□ -0.16
SQSTM1-203ENST00000422245 GABRQQ9UN88 632 aa14.06□□□□□ -0.16
SQSTM1-203ENST00000422245 MKI67P46013 3256 aaKnown RBP14.05□□□□□ -0.16
SQSTM1-203ENST00000422245 ADCY3O60266 1144 aa14.05□□□□□ -0.16
SQSTM1-203ENST00000422245 GDF11O95390 407 aa14.05□□□□□ -0.16
SQSTM1-203ENST00000422245 GJB1P08034 283 aa14.05□□□□□ -0.16
SQSTM1-203ENST00000422245 USP5P45974 858 aa14.05□□□□□ -0.16
SQSTM1-203ENST00000422245 IRX3P78415 501 aaPredicted RBP14.05□□□□□ -0.16
SQSTM1-203ENST00000422245 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.05□□□□□ -0.16
SQSTM1-203ENST00000422245 RNF208Q9H0X6 261 aa14.05□□□□□ -0.16
SQSTM1-203ENST00000422245 ASCC2Q9H1I8 757 aaPredicted RBP14.05□□□□□ -0.16
SQSTM1-203ENST00000422245 ANTXR1Q9H6X2 564 aa14.05□□□□□ -0.16
SQSTM1-203ENST00000422245 ZBTB40Q9NUA8 1239 aa14.05□□□□□ -0.16
SQSTM1-203ENST00000422245 COG6Q9Y2V7 657 aa14.05□□□□□ -0.16
SQSTM1-203ENST00000422245 NDUFB9Q9Y6M9 179 aa14.05□□□□□ -0.16
SQSTM1-203ENST00000422245 C19orf81C9J6K1 198 aa14.04□□□□□ -0.16
SQSTM1-203ENST00000422245 IFIT2P09913 472 aaKnown RBP14.04□□□□□ -0.16
SQSTM1-203ENST00000422245 GJA8P48165 433 aa14.04□□□□□ -0.16
SQSTM1-203ENST00000422245 RCAN3Q9UKA8 241 aa14.04□□□□□ -0.16
SQSTM1-203ENST00000422245 DDX60LQ5H9U9 1706 aaKnown RBP14.04□□□□□ -0.16
SQSTM1-203ENST00000422245 CEP290O15078 2479 aa14.03□□□□□ -0.16
SQSTM1-203ENST00000422245 USP17L10C9JJH3 530 aa14.03□□□□□ -0.16
SQSTM1-203ENST00000422245 RAB11FIP3O75154 756 aa14.03□□□□□ -0.16
SQSTM1-203ENST00000422245 INHAP05111 366 aa14.03□□□□□ -0.16
SQSTM1-203ENST00000422245 ELNP15502 786 aa14.03□□□□□ -0.16
SQSTM1-203ENST00000422245 CAPN2P17655 700 aa14.03□□□□□ -0.16
SQSTM1-203ENST00000422245 HOXA7P31268 230 aaPredicted RBP14.03□□□□□ -0.16
SQSTM1-203ENST00000422245 JAG1P78504 1218 aa14.03□□□□□ -0.16
SQSTM1-203ENST00000422245 TTC6Q86TZ1 520 aa14.03□□□□□ -0.16
SQSTM1-203ENST00000422245 GTF3C2Q8WUA4 911 aaPredicted RBP14.03□□□□□ -0.16
SQSTM1-203ENST00000422245 RIOK1Q9BRS2 568 aaKnown RBP14.03□□□□□ -0.16
SQSTM1-203ENST00000422245 MORF4L1Q9UBU8 362 aa14.03□□□□□ -0.16
SQSTM1-203ENST00000422245 SERPINB13Q9UIV8 391 aa14.03□□□□□ -0.16
SQSTM1-203ENST00000422245 DOCK3Q8IZD9 2030 aa14.02□□□□□ -0.16
SQSTM1-203ENST00000422245 NAV1Q8NEY1 1877 aa14.02□□□□□ -0.16
SQSTM1-203ENST00000422245 MAGEB6P1A0A0J9YX57 407 aa14.02□□□□□ -0.17
SQSTM1-203ENST00000422245 APBB1O00213 710 aa14.02□□□□□ -0.17
SQSTM1-203ENST00000422245 GH2P01242 217 aa14.02□□□□□ -0.17
SQSTM1-203ENST00000422245 PDE6AP16499 860 aa14.02□□□□□ -0.17
SQSTM1-203ENST00000422245 SHROOM1Q2M3G4 852 aaPredicted RBP14.02□□□□□ -0.17
SQSTM1-203ENST00000422245 TATDN1Q6P1N9 297 aa14.02□□□□□ -0.17
SQSTM1-203ENST00000422245 SIRT2Q8IXJ6 389 aa14.02□□□□□ -0.17
SQSTM1-203ENST00000422245 U2AF1L4Q8WU68 220 aaKnown RBP14.02□□□□□ -0.17
SQSTM1-203ENST00000422245 UNC93B1Q9H1C4 597 aa14.02□□□□□ -0.17
SQSTM1-203ENST00000422245 TAOK2Q9UL54 1235 aa14.02□□□□□ -0.17
SQSTM1-203ENST00000422245 HERVK_113P62684 666 aa14.01□□□□□ -0.17
SQSTM1-203ENST00000422245 SLC9C2Q5TAH2 1124 aa14.01□□□□□ -0.17
SQSTM1-203ENST00000422245 USP17L2Q6R6M4 530 aa14.01□□□□□ -0.17
SQSTM1-203ENST00000422245 UBE2Q1Q7Z7E8 422 aa14.01□□□□□ -0.17
SQSTM1-203ENST00000422245 DNAJC2Q99543 621 aaKnown RBP14.01□□□□□ -0.17
SQSTM1-203ENST00000422245 FEZ1Q99689 392 aa14.01□□□□□ -0.17
SQSTM1-203ENST00000422245 CRNKL1Q9BZJ0 848 aaKnown RBP14.01□□□□□ -0.17
SQSTM1-203ENST00000422245 PCDH10Q9P2E7 1040 aa14.01□□□□□ -0.17
SQSTM1-203ENST00000422245 GOLIM4O00461 696 aa14□□□□□ -0.17
SQSTM1-203ENST00000422245 FARP2O94887 1054 aaPredicted RBP14□□□□□ -0.17
SQSTM1-203ENST00000422245 HMGCRP04035 888 aa14□□□□□ -0.17
SQSTM1-203ENST00000422245 USP14P54578 494 aa14□□□□□ -0.17
SQSTM1-203ENST00000422245 HABP4Q5JVS0 413 aaKnown RBP14□□□□□ -0.17
SQSTM1-203ENST00000422245 GPRC5AQ8NFJ5 357 aa14□□□□□ -0.17
SQSTM1-203ENST00000422245 C12orf42Q96LP6 360 aa14□□□□□ -0.17
SQSTM1-203ENST00000422245 HTATIP2Q9BUP3 242 aa14□□□□□ -0.17
SQSTM1-203ENST00000422245 PAK6Q9NQU5 681 aaPredicted RBP14□□□□□ -0.17
SQSTM1-203ENST00000422245 ZNF532Q9HCE3 1301 aa13.99□□□□□ -0.17
SQSTM1-203ENST00000422245 SGPL1O95470 568 aa13.99□□□□□ -0.17
SQSTM1-203ENST00000422245 PDE3AQ14432 1141 aa13.99□□□□□ -0.17
SQSTM1-203ENST00000422245 ABCB5Q2M3G0 1257 aa13.99□□□□□ -0.17
SQSTM1-203ENST00000422245 CERKLQ49MI3 558 aaPredicted RBP13.99□□□□□ -0.17
SQSTM1-203ENST00000422245 SOCS4Q8WXH5 440 aa13.99□□□□□ -0.17
SQSTM1-203ENST00000422245 P2RX7Q99572 595 aaKnown RBP13.99□□□□□ -0.17
SQSTM1-203ENST00000422245 CABP5Q9NP86 173 aa13.99□□□□□ -0.17
SQSTM1-203ENST00000422245 EMILIN3Q9NT22 766 aa13.99□□□□□ -0.17
SQSTM1-203ENST00000422245 TCRBV5S4A2TA0A5A2 114 aa13.98□□□□□ -0.17
SQSTM1-203ENST00000422245 POLR3DP05423 398 aaPredicted RBP13.98□□□□□ -0.17
SQSTM1-203ENST00000422245 ATP5JP18859 108 aa13.98□□□□□ -0.17
SQSTM1-203ENST00000422245 MAPK4P31152 587 aa13.98□□□□□ -0.17
SQSTM1-203ENST00000422245 SHMT1P34896 483 aa13.98□□□□□ -0.17
SQSTM1-203ENST00000422245 PLCD1P51178 756 aa13.98□□□□□ -0.17
SQSTM1-203ENST00000422245 GABPAQ06546 454 aa13.98□□□□□ -0.17
SQSTM1-203ENST00000422245 RAB3GAP1Q15042 981 aa13.98□□□□□ -0.17
SQSTM1-203ENST00000422245 DEFB118Q96PH6 123 aa13.98□□□□□ -0.17
SQSTM1-203ENST00000422245 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.98□□□□□ -0.17
SQSTM1-203ENST00000422245 KIAA1683Q9H0B3 1180 aa13.98□□□□□ -0.17
SQSTM1-203ENST00000422245 TXNRD2Q9NNW7 524 aa13.98□□□□□ -0.17
SQSTM1-203ENST00000422245 PAG1Q9NWQ8 432 aa13.98□□□□□ -0.17
SQSTM1-203ENST00000422245 MCM9Q9NXL9 1143 aa13.98□□□□□ -0.17
SQSTM1-203ENST00000422245 GJD2Q9UKL4 321 aa13.98□□□□□ -0.17
SQSTM1-203ENST00000422245 PLXNB2O15031 1838 aa13.98□□□□□ -0.17
SQSTM1-203ENST00000422245 H0YGN5 161 aa13.97□□□□□ -0.17
SQSTM1-203ENST00000422245 ERVK-9P63128 1117 aa13.97□□□□□ -0.17
SQSTM1-203ENST00000422245 ERVK-24P63145 666 aa13.97□□□□□ -0.17
SQSTM1-203ENST00000422245 LCORLQ8N3X6 602 aa13.97□□□□□ -0.17
SQSTM1-203ENST00000422245 NUDT12Q9BQG2 462 aa13.97□□□□□ -0.17
SQSTM1-203ENST00000422245 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.97□□□□□ -0.175e-9■■■■□ 21.6
SQSTM1-203ENST00000422245 DCP1AQ9NPI6 582 aaPredicted RBP13.97□□□□□ -0.17
SQSTM1-203ENST00000422245 MYH7P12883 1935 aa13.96□□□□□ -0.17
SQSTM1-203ENST00000422245 USP17L15C9J2P7 530 aa13.96□□□□□ -0.17
SQSTM1-203ENST00000422245 USP17L13C9JLJ4 530 aa13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms