RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 THAP12O43422 761 aa14.7□□□□□ -0.06
CCDC88A-204ENST00000413716 MCF2P10911 925 aa14.7□□□□□ -0.06
CCDC88A-204ENST00000413716 NFE2L2Q16236 605 aa14.7□□□□□ -0.06
CCDC88A-204ENST00000413716 BACH1O14867 736 aa14.7□□□□□ -0.06
CCDC88A-204ENST00000413716 LMNB1P20700 586 aa14.7□□□□□ -0.06
CCDC88A-204ENST00000413716 ARHGAP6O43182 974 aa14.7□□□□□ -0.06
CCDC88A-204ENST00000413716 TRPA1O75762 1119 aa14.7□□□□□ -0.06
CCDC88A-204ENST00000413716 STX17P56962 302 aa14.7□□□□□ -0.06
CCDC88A-204ENST00000413716 RNASELQ05823 741 aaKnown RBP14.7□□□□□ -0.06
CCDC88A-204ENST00000413716 CREB3O43889 395 aa14.69□□□□□ -0.06
CCDC88A-204ENST00000413716 BMP2KLQ5H9B9 411 aa14.69□□□□□ -0.06
CCDC88A-204ENST00000413716 CCDC152Q4G0S7 254 aa14.69□□□□□ -0.06
CCDC88A-204ENST00000413716 FGD4Q96M96 766 aa14.69□□□□□ -0.06
CCDC88A-204ENST00000413716 TRIM15Q9C019 465 aa14.69□□□□□ -0.06
CCDC88A-204ENST00000413716 PRDM11Q9NQV5 511 aa14.69□□□□□ -0.06
CCDC88A-204ENST00000413716 SF3A3Q12874 501 aaKnown RBP eCLIP14.69□□□□□ -0.06
CCDC88A-204ENST00000413716 RAB44Q7Z6P3 723 aaPredicted RBP14.69□□□□□ -0.06
CCDC88A-204ENST00000413716 STK24Q9Y6E0 443 aa14.69□□□□□ -0.06
CCDC88A-204ENST00000413716 CAMSAP2Q08AD1 1489 aa14.69□□□□□ -0.06
CCDC88A-204ENST00000413716 NVLO15381 856 aaKnown RBP14.69□□□□□ -0.06
CCDC88A-204ENST00000413716 SUN1O94901 812 aa14.69□□□□□ -0.06
CCDC88A-204ENST00000413716 SKIP12755 728 aa14.69□□□□□ -0.06
CCDC88A-204ENST00000413716 GARSP41250 739 aaKnown RBP14.69□□□□□ -0.06
CCDC88A-204ENST00000413716 SLC13A4Q9UKG4 626 aa14.69□□□□□ -0.06
CCDC88A-204ENST00000413716 CD2APQ9Y5K6 639 aa14.69□□□□□ -0.06
CCDC88A-204ENST00000413716 H3BRJ5 948 aa14.69□□□□□ -0.06
CCDC88A-204ENST00000413716 ARHGDIAP52565 204 aa14.69□□□□□ -0.06
CCDC88A-204ENST00000413716 SNX1Q13596 522 aa14.69□□□□□ -0.06
CCDC88A-204ENST00000413716 TRIM59Q8IWR1 403 aa14.69□□□□□ -0.06
CCDC88A-204ENST00000413716 ZCRB1Q8TBF4 217 aaKnown RBP14.69□□□□□ -0.06
CCDC88A-204ENST00000413716 SUCLA2Q9P2R7 463 aaPredicted RBP14.69□□□□□ -0.06
CCDC88A-204ENST00000413716 NUTM2BA6NNL0 878 aaPredicted RBP14.69□□□□□ -0.06
CCDC88A-204ENST00000413716 NUTM2EB1AL46 878 aaPredicted RBP14.69□□□□□ -0.06
CCDC88A-204ENST00000413716 F13A1P00488 732 aa14.69□□□□□ -0.06
CCDC88A-204ENST00000413716 OCA2Q04671 838 aa14.69□□□□□ -0.06
CCDC88A-204ENST00000413716 ST13P4Q8IZP2 240 aaPredicted RBP14.69□□□□□ -0.06
CCDC88A-204ENST00000413716 ANGPTL2Q9UKU9 493 aa14.69□□□□□ -0.06
CCDC88A-204ENST00000413716 OATP04181 439 aa14.68□□□□□ -0.06
CCDC88A-204ENST00000413716 ASPHQ12797 758 aa14.68□□□□□ -0.06
CCDC88A-204ENST00000413716 PPP2R5AQ15172 486 aa14.68□□□□□ -0.06
CCDC88A-204ENST00000413716 SCYL3Q8IZE3 742 aa14.68□□□□□ -0.06
CCDC88A-204ENST00000413716 GOLGA5Q8TBA6 731 aa14.68□□□□□ -0.06
CCDC88A-204ENST00000413716 SLC4A1P02730 911 aa14.68□□□□□ -0.06
CCDC88A-204ENST00000413716 P4HA1P13674 534 aa14.68□□□□□ -0.06
CCDC88A-204ENST00000413716 ECE1P42892 770 aa14.68□□□□□ -0.06
CCDC88A-204ENST00000413716 TRIM42Q8IWZ5 723 aa14.68□□□□□ -0.06
CCDC88A-204ENST00000413716 MYL5Q02045 173 aa14.68□□□□□ -0.06
CCDC88A-204ENST00000413716 IMPACTQ9P2X3 320 aa14.68□□□□□ -0.06
CCDC88A-204ENST00000413716 DNM1Q05193 864 aaKnown RBP14.68□□□□□ -0.06
CCDC88A-204ENST00000413716 LRRC8CQ8TDW0 803 aa14.68□□□□□ -0.06
CCDC88A-204ENST00000413716 RPS6KA1Q15418 735 aa14.68□□□□□ -0.06
CCDC88A-204ENST00000413716 ZNF280CQ8ND82 737 aa14.68□□□□□ -0.06
CCDC88A-204ENST00000413716 PRIM1P49642 420 aaKnown RBP14.68□□□□□ -0.06
CCDC88A-204ENST00000413716 ST5P78524 1137 aa14.68□□□□□ -0.06
CCDC88A-204ENST00000413716 PPARDQ03181 441 aa14.68□□□□□ -0.06
CCDC88A-204ENST00000413716 KLHL7Q8IXQ5 586 aa14.68□□□□□ -0.06
CCDC88A-204ENST00000413716 PRPF38AQ8NAV1 312 aaKnown RBP14.68□□□□□ -0.06
CCDC88A-204ENST00000413716 CDK19Q9BWU1 502 aa14.68□□□□□ -0.06
CCDC88A-204ENST00000413716 USTQ9Y2C2 406 aa14.68□□□□□ -0.06
CCDC88A-204ENST00000413716 RNF207Q6ZRF8 634 aa14.68□□□□□ -0.06
CCDC88A-204ENST00000413716 TRIM50Q86XT4 487 aa14.68□□□□□ -0.06
CCDC88A-204ENST00000413716 PRAM1Q96QH2 718 aa14.68□□□□□ -0.06
CCDC88A-204ENST00000413716 NR1H4Q96RI1 486 aaPredicted RBP14.67□□□□□ -0.06
CCDC88A-204ENST00000413716 Q6ZUG5 572 aa14.67□□□□□ -0.06
CCDC88A-204ENST00000413716 OGFOD1Q8N543 542 aa14.67□□□□□ -0.06
CCDC88A-204ENST00000413716 ATL3Q6DD88 541 aa14.67□□□□□ -0.06
CCDC88A-204ENST00000413716 TTC19Q6DKK2 380 aaPredicted RBP14.67□□□□□ -0.06
CCDC88A-204ENST00000413716 PPP1R12AO14974 1030 aaPredicted RBP14.67□□□□□ -0.06
CCDC88A-204ENST00000413716 RPSAP08865 295 aaKnown RBP14.67□□□□□ -0.06
CCDC88A-204ENST00000413716 TMEM132EQ6IEE7 984 aa14.67□□□□□ -0.06
CCDC88A-204ENST00000413716 SND1Q7KZF4 910 aaKnown RBP eCLIP14.67□□□□□ -0.06
CCDC88A-204ENST00000413716 TEKT1Q969V4 418 aa14.67□□□□□ -0.06
CCDC88A-204ENST00000413716 TMX3Q96JJ7 454 aa14.67□□□□□ -0.06
CCDC88A-204ENST00000413716 HLA-DPA1P20036 260 aa14.67□□□□□ -0.06
CCDC88A-204ENST00000413716 POLE2P56282 527 aa14.67□□□□□ -0.06
CCDC88A-204ENST00000413716 ZKSCAN8Q15776 578 aaPredicted RBP14.67□□□□□ -0.06
CCDC88A-204ENST00000413716 TBCCQ15814 346 aa14.67□□□□□ -0.06
CCDC88A-204ENST00000413716 WWC3Q9ULE0 1092 aa14.67□□□□□ -0.06
CCDC88A-204ENST00000413716 OCM2P0CE71 109 aa14.67□□□□□ -0.06
CCDC88A-204ENST00000413716 OCMP0CE72 109 aaPredicted RBP14.67□□□□□ -0.06
CCDC88A-204ENST00000413716 TSC22D3Q99576 134 aa14.67□□□□□ -0.06
CCDC88A-204ENST00000413716 CECR2Q9BXF3 1484 aa14.67□□□□□ -0.06
CCDC88A-204ENST00000413716 DAB2P98082 770 aa14.67□□□□□ -0.06
CCDC88A-204ENST00000413716 CEP70Q8NHQ1 597 aa14.67□□□□□ -0.06
CCDC88A-204ENST00000413716 OLA1Q9NTK5 396 aaKnown RBP14.67□□□□□ -0.06
CCDC88A-204ENST00000413716 PACSIN2Q9UNF0 486 aaPredicted RBP14.67□□□□□ -0.06
CCDC88A-204ENST00000413716 RTEL1-TNFRSF6BF6WH68 1400 aa14.67□□□□□ -0.06
CCDC88A-204ENST00000413716 HARSP12081 509 aaKnown RBP14.66□□□□□ -0.06
CCDC88A-204ENST00000413716 PLCD1P51178 756 aa14.66□□□□□ -0.06
CCDC88A-204ENST00000413716 GNGT1P63211 74 aa14.66□□□□□ -0.06
CCDC88A-204ENST00000413716 TBC1D8BQ0IIM8 1120 aa14.66□□□□□ -0.06
CCDC88A-204ENST00000413716 TTC22Q5TAA0 569 aa14.66□□□□□ -0.06
CCDC88A-204ENST00000413716 IFT122Q9HBG6 1241 aa14.66□□□□□ -0.06
CCDC88A-204ENST00000413716 ABCC11Q96J66 1382 aa14.66□□□□□ -0.06
CCDC88A-204ENST00000413716 SYCE1LA8MT33 242 aa14.66□□□□□ -0.06
CCDC88A-204ENST00000413716 H0YC42 278 aa14.66□□□□□ -0.06
CCDC88A-204ENST00000413716 POLD1P28340 1107 aa14.66□□□□□ -0.06
CCDC88A-204ENST00000413716 STX1BP61266 288 aa14.66□□□□□ -0.06
CCDC88A-204ENST00000413716 SPDYE2BA6NHP3 402 aa14.66□□□□□ -0.06
CCDC88A-204ENST00000413716 SPDYE6P0CI01 402 aa14.66□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms