RNA–Protein interactions for RNA: ENST00000411525.1

LINC00539-201, long intergenic non-protein coding RNA 539, humanhuman

TSL 3

Gene LINC00539, Length 664 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-201ENST00000411525 ANAPC4Q9UJX5 808 aa13.32□□□□□ -0.28
LINC00539-201ENST00000411525 RHBDL3P58872 404 aa13.31□□□□□ -0.28
LINC00539-201ENST00000411525 TRDNQ13061 729 aa13.31□□□□□ -0.28
LINC00539-201ENST00000411525 ANKRD1Q15327 319 aa13.31□□□□□ -0.28
LINC00539-201ENST00000411525 CFAP100Q494V2 611 aa13.31□□□□□ -0.28
LINC00539-201ENST00000411525 AKNAD1Q5T1N1 836 aa13.31□□□□□ -0.28
LINC00539-201ENST00000411525 NOL8Q76FK4 1167 aaKnown RBP13.31□□□□□ -0.28
LINC00539-201ENST00000411525 DHX32Q7L7V1 743 aaKnown RBP13.31□□□□□ -0.28
LINC00539-201ENST00000411525 MB21D2Q8IYB1 491 aaPredicted RBP13.31□□□□□ -0.28
LINC00539-201ENST00000411525 STAG1Q8WVM7 1258 aa13.31□□□□□ -0.28
LINC00539-201ENST00000411525 TCEANC2Q96MN5 208 aa13.31□□□□□ -0.28
LINC00539-201ENST00000411525 ZDHHC15Q96MV8 337 aa13.31□□□□□ -0.28
LINC00539-201ENST00000411525 MRIQ9BWK5 157 aa13.31□□□□□ -0.28
LINC00539-201ENST00000411525 RNF41Q9H4P4 317 aaPredicted RBP13.31□□□□□ -0.28
LINC00539-201ENST00000411525 NEDD4P46934 1319 aa13.31□□□□□ -0.28
LINC00539-201ENST00000411525 SPDYE2BA6NHP3 402 aa13.3□□□□□ -0.28
LINC00539-201ENST00000411525 MINDY4BA8MYZ0 360 aa13.3□□□□□ -0.28
LINC00539-201ENST00000411525 SPDYE6P0CI01 402 aa13.3□□□□□ -0.28
LINC00539-201ENST00000411525 IREB2P48200 963 aaKnown RBP13.3□□□□□ -0.28
LINC00539-201ENST00000411525 CTDSPL2Q05D32 466 aa13.3□□□□□ -0.28
LINC00539-201ENST00000411525 TNFAIP1Q13829 316 aa13.3□□□□□ -0.28
LINC00539-201ENST00000411525 SBK1Q52WX2 424 aa13.3□□□□□ -0.28
LINC00539-201ENST00000411525 OTUD7BQ6GQQ9 843 aa13.3□□□□□ -0.28
LINC00539-201ENST00000411525 CTR9Q6PD62 1173 aa13.3□□□□□ -0.28
LINC00539-201ENST00000411525 AMOTL1Q8IY63 956 aa13.3□□□□□ -0.28
LINC00539-201ENST00000411525 TGFBRAP1Q8WUH2 860 aa13.3□□□□□ -0.28
LINC00539-201ENST00000411525 TMX3Q96JJ7 454 aa13.3□□□□□ -0.28
LINC00539-201ENST00000411525 CNNM2Q9H8M5 875 aa13.3□□□□□ -0.28
LINC00539-201ENST00000411525 SERPINA10Q9UK55 444 aa13.3□□□□□ -0.28
LINC00539-201ENST00000411525 MYH1P12882 1939 aa13.3□□□□□ -0.28
LINC00539-201ENST00000411525 FLT1P17948 1338 aa13.3□□□□□ -0.28
LINC00539-201ENST00000411525 WDR19Q8NEZ3 1342 aa13.3□□□□□ -0.28
LINC00539-201ENST00000411525 ROBO3Q96MS0 1386 aa13.3□□□□□ -0.28
LINC00539-201ENST00000411525 CYP2D7A0A087X1C5 515 aa13.29□□□□□ -0.28
LINC00539-201ENST00000411525 USP17L12C9JPN9 530 aa13.29□□□□□ -0.28
LINC00539-201ENST00000411525 USP17L21D6R901 530 aa13.29□□□□□ -0.28
LINC00539-201ENST00000411525 HSP90AA1P07900 732 aaKnown RBP13.29□□□□□ -0.28
LINC00539-201ENST00000411525 MCM5P33992 734 aa13.29□□□□□ -0.28
LINC00539-201ENST00000411525 RBM5P52756 815 aaKnown RBP eCLIP13.29□□□□□ -0.28
LINC00539-201ENST00000411525 EXOSC10Q01780 885 aaKnown RBP13.29□□□□□ -0.28
LINC00539-201ENST00000411525 TOB2Q14106 344 aaPredicted RBP13.29□□□□□ -0.28
LINC00539-201ENST00000411525 APOBEC3HQ6NTF7 200 aaKnown RBP13.29□□□□□ -0.28
LINC00539-201ENST00000411525 MFSD6Q6ZSS7 791 aa13.29□□□□□ -0.28
LINC00539-201ENST00000411525 Q6ZUG5 572 aa13.29□□□□□ -0.28
LINC00539-201ENST00000411525 MAPKAPK5Q8IW41 473 aa13.29□□□□□ -0.28
LINC00539-201ENST00000411525 KRT23Q9C075 422 aa13.29□□□□□ -0.28
LINC00539-201ENST00000411525 MCM9Q9NXL9 1143 aa13.29□□□□□ -0.28
LINC00539-201ENST00000411525 LIMCH1Q9UPQ0 1083 aa13.29□□□□□ -0.28
LINC00539-201ENST00000411525 B4E1Z4 1266 aa13.28□□□□□ -0.28
LINC00539-201ENST00000411525 PRC1O43663 620 aa13.28□□□□□ -0.28
LINC00539-201ENST00000411525 SLC3A2P08195 630 aaKnown RBP13.28□□□□□ -0.28
LINC00539-201ENST00000411525 PCP11498 1178 aaKnown RBP13.28□□□□□ -0.28
LINC00539-201ENST00000411525 FGD1P98174 961 aa13.28□□□□□ -0.28
LINC00539-201ENST00000411525 CDC42EP5Q6NZY7 148 aa13.28□□□□□ -0.28
LINC00539-201ENST00000411525 IFNL1Q8IU54 200 aa13.28□□□□□ -0.28
LINC00539-201ENST00000411525 ANKRD13AQ8IZ07 590 aa13.28□□□□□ -0.28
LINC00539-201ENST00000411525 WNK4Q96J92 1243 aa13.28□□□□□ -0.28
LINC00539-201ENST00000411525 PRMT6Q96LA8 375 aaPredicted RBP13.28□□□□□ -0.28
LINC00539-201ENST00000411525 VEZTQ9HBM0 779 aa13.28□□□□□ -0.28
LINC00539-201ENST00000411525 SH2B1Q9NRF2 756 aaPredicted RBP13.28□□□□□ -0.28
LINC00539-201ENST00000411525 CLRN2A0PK11 232 aa13.27□□□□□ -0.29
LINC00539-201ENST00000411525 WDHD1O75717 1129 aaPredicted RBP13.27□□□□□ -0.29
LINC00539-201ENST00000411525 CYP2D6P10635 497 aa13.27□□□□□ -0.29
LINC00539-201ENST00000411525 ANTXR2P58335 489 aa13.27□□□□□ -0.29
LINC00539-201ENST00000411525 CUL4AQ13619 759 aa13.27□□□□□ -0.29
LINC00539-201ENST00000411525 C12orf60Q5U649 245 aa13.27□□□□□ -0.29
LINC00539-201ENST00000411525 PRPF38BQ5VTL8 546 aaKnown RBP13.27□□□□□ -0.29
LINC00539-201ENST00000411525 FBXL16Q8N461 479 aa13.27□□□□□ -0.29
LINC00539-201ENST00000411525 SPRYD3Q8NCJ5 442 aa13.27□□□□□ -0.29
LINC00539-201ENST00000411525 ZSCAN31Q96LW9 406 aaPredicted RBP13.27□□□□□ -0.29
LINC00539-201ENST00000411525 LRRC2Q9BYS8 371 aa13.27□□□□□ -0.29
LINC00539-201ENST00000411525 AGXT2Q9BYV1 514 aa13.27□□□□□ -0.29
LINC00539-201ENST00000411525 SLKQ9H2G2 1235 aaPredicted RBP13.27□□□□□ -0.29
LINC00539-201ENST00000411525 USP40Q9NVE5 1235 aa13.27□□□□□ -0.29
LINC00539-201ENST00000411525 PCDH10Q9P2E7 1040 aa13.27□□□□□ -0.29
LINC00539-201ENST00000411525 TACC3Q9Y6A5 838 aa13.27□□□□□ -0.29
LINC00539-201ENST00000411525 SMIM22K7EJ46 135 aa13.26□□□□□ -0.29
LINC00539-201ENST00000411525 LARGE1O95461 756 aa13.26□□□□□ -0.29
LINC00539-201ENST00000411525 POLR3DP05423 398 aaPredicted RBP13.26□□□□□ -0.29
LINC00539-201ENST00000411525 FGRP09769 529 aa13.26□□□□□ -0.29
LINC00539-201ENST00000411525 TNNI2P48788 182 aa13.26□□□□□ -0.29
LINC00539-201ENST00000411525 PICALMQ13492 652 aa13.26□□□□□ -0.29
LINC00539-201ENST00000411525 RASA3Q14644 834 aa13.26□□□□□ -0.29
LINC00539-201ENST00000411525 RRP12Q5JTH9 1297 aaKnown RBP13.26□□□□□ -0.29
LINC00539-201ENST00000411525 NBPF12Q5TAG4 269 aaPredicted RBP13.26□□□□□ -0.29
LINC00539-201ENST00000411525 CYB5R4Q7L1T6 521 aa13.26□□□□□ -0.29
LINC00539-201ENST00000411525 CHST3Q7LGC8 479 aa13.26□□□□□ -0.29
LINC00539-201ENST00000411525 STK11IPQ8N1F8 1099 aa13.26□□□□□ -0.29
LINC00539-201ENST00000411525 BRF1Q92994 677 aa13.26□□□□□ -0.29
LINC00539-201ENST00000411525 ERO1AQ96HE7 468 aa13.26□□□□□ -0.29
LINC00539-201ENST00000411525 LARP6Q9BRS8 491 aaKnown RBP13.26□□□□□ -0.29
LINC00539-201ENST00000411525 TOMM22Q9NS69 142 aa13.26□□□□□ -0.29
LINC00539-201ENST00000411525 SAP30BPQ9UHR5 308 aaKnown RBP13.26□□□□□ -0.29
LINC00539-201ENST00000411525 TPCN1Q9ULQ1 816 aa13.26□□□□□ -0.29
LINC00539-201ENST00000411525 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.26□□□□□ -0.29
LINC00539-201ENST00000411525 PCDHAC2Q9Y5I4 1007 aa13.26□□□□□ -0.29
LINC00539-201ENST00000411525 KIAA0100Q14667 2235 aaKnown RBP13.25□□□□□ -0.29
LINC00539-201ENST00000411525 SSC5DA1L4H1 1573 aa13.25□□□□□ -0.29
LINC00539-201ENST00000411525 KDM4AO75164 1064 aa13.25□□□□□ -0.29
LINC00539-201ENST00000411525 USP2O75604 605 aaPredicted RBP13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms