RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 AGTPBP1Q9UPW5 1226 aa23.05■■□□□ 1.28
SF3A1-202ENST00000411423 SHMT1P34896 483 aa23.04■■□□□ 1.28
SF3A1-202ENST00000411423 GABPAQ06546 454 aa23.04■■□□□ 1.28
SF3A1-202ENST00000411423 PARK7Q99497 189 aaKnown RBP23.04■■□□□ 1.28
SF3A1-202ENST00000411423 WDR18Q9BV38 432 aa23.04■■□□□ 1.28
SF3A1-202ENST00000411423 GH2P01242 217 aa23.03■■□□□ 1.28
SF3A1-202ENST00000411423 ASNSP08243 561 aa23.03■■□□□ 1.28
SF3A1-202ENST00000411423 HDAC1Q13547 482 aaPredicted RBP23.03■■□□□ 1.28
SF3A1-202ENST00000411423 MTMR2Q13614 643 aa23.03■■□□□ 1.28
SF3A1-202ENST00000411423 SH3D19Q5HYK7 790 aa23.03■■□□□ 1.28
SF3A1-202ENST00000411423 TTC6Q86TZ1 520 aa23.03■■□□□ 1.28
SF3A1-202ENST00000411423 EXOC6Q8TAG9 804 aa23.03■■□□□ 1.28
SF3A1-202ENST00000411423 TRIM34Q9BYJ4 488 aa23.03■■□□□ 1.28
SF3A1-202ENST00000411423 DDX24Q9GZR7 859 aaKnown RBP eCLIP23.03■■□□□ 1.281e-6■□□□□ 10.3
SF3A1-202ENST00000411423 MCM9Q9NXL9 1143 aa23.03■■□□□ 1.28
SF3A1-202ENST00000411423 SLC45A1Q9Y2W3 748 aa23.03■■□□□ 1.28
SF3A1-202ENST00000411423 PTCH2Q9Y6C5 1203 aa23.03■■□□□ 1.28
SF3A1-202ENST00000411423 POLR3DP05423 398 aaPredicted RBP23.02■■□□□ 1.28
SF3A1-202ENST00000411423 KBTBD3Q8NAB2 608 aa23.02■■□□□ 1.28
SF3A1-202ENST00000411423 PROCA1Q8NCQ7 364 aaPredicted RBP23.02■■□□□ 1.28
SF3A1-202ENST00000411423 CYP2D7A0A087X1C5 515 aa23.01■■□□□ 1.27
SF3A1-202ENST00000411423 GUCY1A2P33402 732 aa23.01■■□□□ 1.27
SF3A1-202ENST00000411423 SLC44A5Q8NCS7 719 aa23.01■■□□□ 1.27
SF3A1-202ENST00000411423 TRIM47Q96LD4 638 aa23.01■■□□□ 1.27
SF3A1-202ENST00000411423 TBC1D2Q9BYX2 928 aa23.01■■□□□ 1.27
SF3A1-202ENST00000411423 AS3MTQ9HBK9 375 aa23.01■■□□□ 1.27
SF3A1-202ENST00000411423 BAZ2AQ9UIF9 1905 aaKnown RBP23.01■■□□□ 1.27
SF3A1-202ENST00000411423 BACE1P56817 501 aa23■■□□□ 1.27
SF3A1-202ENST00000411423 ANKRD45Q5TZF3 282 aa23■■□□□ 1.27
SF3A1-202ENST00000411423 OSBP2Q969R2 916 aa23■■□□□ 1.27
SF3A1-202ENST00000411423 DYNLL2Q96FJ2 89 aa23■■□□□ 1.27
SF3A1-202ENST00000411423 GPATCH3Q96I76 525 aa23■■□□□ 1.27
SF3A1-202ENST00000411423 SUPT16HQ9Y5B9 1047 aaKnown RBP23■■□□□ 1.27
SF3A1-202ENST00000411423 TTC41PQ6P2S7 1318 aa23■■□□□ 1.27
SF3A1-202ENST00000411423 BRCA2P51587 3418 aa22.99■■□□□ 1.27
SF3A1-202ENST00000411423 PSMC4P43686 418 aa22.99■■□□□ 1.27
SF3A1-202ENST00000411423 CERKLQ49MI3 558 aaPredicted RBP22.99■■□□□ 1.27
SF3A1-202ENST00000411423 GINM1Q9NU53 330 aa22.99■■□□□ 1.27
SF3A1-202ENST00000411423 IGHDP01880 384 aa22.98■■□□□ 1.27
SF3A1-202ENST00000411423 MX1P20591 662 aa22.98■■□□□ 1.27
SF3A1-202ENST00000411423 STRBPQ96SI9 672 aaKnown RBP22.98■■□□□ 1.27
SF3A1-202ENST00000411423 EMILIN3Q9NT22 766 aa22.98■■□□□ 1.27
SF3A1-202ENST00000411423 ATP8A2Q9NTI2 1148 aa22.98■■□□□ 1.27
SF3A1-202ENST00000411423 TNRC18O15417 2968 aaPredicted RBP22.98■■□□□ 1.27
SF3A1-202ENST00000411423 OSBPP22059 807 aa22.97■■□□□ 1.27
SF3A1-202ENST00000411423 KIF22Q14807 665 aa22.97■■□□□ 1.27
SF3A1-202ENST00000411423 ABCB5Q2M3G0 1257 aa22.97■■□□□ 1.27
SF3A1-202ENST00000411423 ZSCAN25Q6NSZ9 544 aa22.97■■□□□ 1.27
SF3A1-202ENST00000411423 ACER1Q8TDN7 264 aa22.97■■□□□ 1.27
SF3A1-202ENST00000411423 GCC1Q96CN9 775 aa22.97■■□□□ 1.27
SF3A1-202ENST00000411423 ASCC2Q9H1I8 757 aaPredicted RBP22.97■■□□□ 1.27
SF3A1-202ENST00000411423 SLC4A4Q9Y6R1 1079 aa22.97■■□□□ 1.27
SF3A1-202ENST00000411423 MGAMO43451 1857 aa22.96■■□□□ 1.27
SF3A1-202ENST00000411423 USP17L10C9JJH3 530 aa22.96■■□□□ 1.27
SF3A1-202ENST00000411423 M0R2C6 588 aa22.96■■□□□ 1.27
SF3A1-202ENST00000411423 RNF113AO15541 343 aaKnown RBP22.96■■□□□ 1.27
SF3A1-202ENST00000411423 PEX10O60683 326 aa22.96■■□□□ 1.27
SF3A1-202ENST00000411423 ANKRD13CQ8N6S4 541 aa22.96■■□□□ 1.27
SF3A1-202ENST00000411423 ARMC5Q96C12 935 aa22.96■■□□□ 1.27
SF3A1-202ENST00000411423 USP17L12C9JPN9 530 aa22.95■■□□□ 1.26
SF3A1-202ENST00000411423 USP17L21D6R901 530 aa22.95■■□□□ 1.26
SF3A1-202ENST00000411423 GLRX3O76003 335 aaKnown RBP22.95■■□□□ 1.26
SF3A1-202ENST00000411423 SEPT2Q15019 361 aa22.95■■□□□ 1.26
SF3A1-202ENST00000411423 RAB3GAP1Q15042 981 aa22.95■■□□□ 1.26
SF3A1-202ENST00000411423 ZYXQ15942 572 aaKnown RBP22.95■■□□□ 1.26
SF3A1-202ENST00000411423 C12orf60Q5U649 245 aa22.95■■□□□ 1.26
SF3A1-202ENST00000411423 CTR9Q6PD62 1173 aa22.95■■□□□ 1.26
SF3A1-202ENST00000411423 POTEEQ6S8J3 1075 aa22.95■■□□□ 1.26
SF3A1-202ENST00000411423 SMCR8Q8TEV9 937 aaPredicted RBP22.95■■□□□ 1.26
SF3A1-202ENST00000411423 APPBP2Q92624 585 aa22.95■■□□□ 1.26
SF3A1-202ENST00000411423 SEC62Q99442 399 aaKnown RBP22.95■■□□□ 1.26
SF3A1-202ENST00000411423 POTEFA5A3E0 1075 aa22.94■■□□□ 1.26
SF3A1-202ENST00000411423 GSG1L2A8MUP6 293 aa22.94■■□□□ 1.26
SF3A1-202ENST00000411423 C19orf81C9J6K1 198 aa22.94■■□□□ 1.26
SF3A1-202ENST00000411423 FMNL1O95466 1100 aaPredicted RBP22.94■■□□□ 1.26
SF3A1-202ENST00000411423 SH3TC2Q8TF17 1288 aa22.94■■□□□ 1.26
SF3A1-202ENST00000411423 SRRDQ9UH36 339 aa22.94■■□□□ 1.26
SF3A1-202ENST00000411423 GABRQQ9UN88 632 aa22.94■■□□□ 1.26
SF3A1-202ENST00000411423 A0A1W2PRG0 241 aa22.93■■□□□ 1.26
SF3A1-202ENST00000411423 ERC2O15083 957 aa22.93■■□□□ 1.26
SF3A1-202ENST00000411423 HOXA7P31268 230 aaPredicted RBP22.93■■□□□ 1.26
SF3A1-202ENST00000411423 MLLT1Q03111 559 aaPredicted RBP22.93■■□□□ 1.26
SF3A1-202ENST00000411423 ARHGEF6Q15052 776 aa22.93■■□□□ 1.26
SF3A1-202ENST00000411423 CLEC10AQ8IUN9 316 aa22.93■■□□□ 1.26
SF3A1-202ENST00000411423 SMC5Q8IY18 1101 aa22.93■■□□□ 1.26
SF3A1-202ENST00000411423 ZNF333Q96JL9 665 aa22.93■■□□□ 1.26
SF3A1-202ENST00000411423 P2RX7Q99572 595 aaKnown RBP22.93■■□□□ 1.26
SF3A1-202ENST00000411423 EPB41L4AQ9HCS5 686 aaPredicted RBP22.93■■□□□ 1.26
SF3A1-202ENST00000411423 TMOD4Q9NZQ9 345 aa22.93■■□□□ 1.26
SF3A1-202ENST00000411423 STAP2Q9UGK3 403 aa22.93■■□□□ 1.26
SF3A1-202ENST00000411423 PNMA3Q9UL41 463 aa22.93■■□□□ 1.26
SF3A1-202ENST00000411423 GPAA1O43292 621 aa22.92■■□□□ 1.26
SF3A1-202ENST00000411423 AKR1B1P15121 316 aa22.92■■□□□ 1.26
SF3A1-202ENST00000411423 PDE1AP54750 535 aa22.92■■□□□ 1.26
SF3A1-202ENST00000411423 PRKCZQ05513 592 aa22.92■■□□□ 1.26
SF3A1-202ENST00000411423 AAMPQ13685 434 aa22.92■■□□□ 1.26
SF3A1-202ENST00000411423 USP17L2Q6R6M4 530 aa22.92■■□□□ 1.26
SF3A1-202ENST00000411423 LNPKQ9C0E8 428 aa22.92■■□□□ 1.26
SF3A1-202ENST00000411423 MYPNQ86TC9 1320 aa22.91■■□□□ 1.26
SF3A1-202ENST00000411423 GNRH1P01148 92 aa22.91■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms