RNA–Protein interactions for RNA: ENST00000411220.1

RNU4-88P-201, Transcript of RNA, U4 small nuclear 88, pseudogene, humanhuman

BASIC

Gene RNU4-88P, Length 86 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-88P-201ENST00000411220 PPP4R1LQ9P1A2 415 aa0.22□□□□□ -2.37
RNU4-88P-201ENST00000411220 USP20Q9Y2K6 914 aa0.22□□□□□ -2.37
RNU4-88P-201ENST00000411220 FRMD4BQ9Y2L6 1034 aa0.22□□□□□ -2.37
RNU4-88P-201ENST00000411220 USP3Q9Y6I4 520 aa0.22□□□□□ -2.37
RNU4-88P-201ENST00000411220 COX11Q9Y6N1 276 aa0.22□□□□□ -2.37
RNU4-88P-201ENST00000411220 TCF20Q9UGU0 1960 aaKnown RBP0.22□□□□□ -2.37
RNU4-88P-201ENST00000411220 ZNF623O75123 536 aa0.21□□□□□ -2.38
RNU4-88P-201ENST00000411220 DLGAP3O95886 979 aa0.21□□□□□ -2.38
RNU4-88P-201ENST00000411220 INHAP05111 366 aa0.21□□□□□ -2.38
RNU4-88P-201ENST00000411220 ASPAP45381 313 aa0.21□□□□□ -2.38
RNU4-88P-201ENST00000411220 ADGRF1Q5T601 910 aa0.21□□□□□ -2.38
RNU4-88P-201ENST00000411220 LAIR1Q6GTX8 287 aa0.21□□□□□ -2.38
RNU4-88P-201ENST00000411220 SAPCD2Q86UD0 394 aa0.21□□□□□ -2.38
RNU4-88P-201ENST00000411220 LDHDQ86WU2 507 aa0.21□□□□□ -2.38
RNU4-88P-201ENST00000411220 PDZD8Q8NEN9 1154 aa0.21□□□□□ -2.38
RNU4-88P-201ENST00000411220 CABLES1Q8TDN4 633 aa0.21□□□□□ -2.38
RNU4-88P-201ENST00000411220 ZNF483Q8TF39 744 aaPredicted RBP0.21□□□□□ -2.38
RNU4-88P-201ENST00000411220 ZNF526Q8TF50 670 aaPredicted RBP0.21□□□□□ -2.38
RNU4-88P-201ENST00000411220 WBP2Q969T9 261 aa0.21□□□□□ -2.38
RNU4-88P-201ENST00000411220 IFT43Q96FT9 208 aa0.21□□□□□ -2.38
RNU4-88P-201ENST00000411220 NSUN5Q96P11 429 aaKnown RBP0.21□□□□□ -2.38
RNU4-88P-201ENST00000411220 DUSP23Q9BVJ7 150 aa0.21□□□□□ -2.38
RNU4-88P-201ENST00000411220 PATE3B3GLJ2 98 aa0.2□□□□□ -2.38
RNU4-88P-201ENST00000411220 SMNDC1O75940 238 aaKnown RBP eCLIP0.2□□□□□ -2.38
RNU4-88P-201ENST00000411220 PROZP22891 400 aa0.2□□□□□ -2.38
RNU4-88P-201ENST00000411220 LIMS1P48059 325 aa0.2□□□□□ -2.38
RNU4-88P-201ENST00000411220 SNX17Q15036 470 aa0.2□□□□□ -2.38
RNU4-88P-201ENST00000411220 MTFR1Q15390 333 aa0.2□□□□□ -2.38
RNU4-88P-201ENST00000411220 USPL1Q5W0Q7 1092 aa0.2□□□□□ -2.38
RNU4-88P-201ENST00000411220 HEATR6Q6AI08 1181 aaKnown RBP0.2□□□□□ -2.38
RNU4-88P-201ENST00000411220 GPRIN1Q7Z2K8 1008 aa0.2□□□□□ -2.38
RNU4-88P-201ENST00000411220 TMPRSS12Q86WS5 348 aa0.2□□□□□ -2.38
RNU4-88P-201ENST00000411220 ZNF761Q86XN6 746 aaPredicted RBP0.2□□□□□ -2.38
RNU4-88P-201ENST00000411220 OXR1Q8N573 874 aa0.2□□□□□ -2.38
RNU4-88P-201ENST00000411220 FNIP1Q8TF40 1166 aa0.2□□□□□ -2.38
RNU4-88P-201ENST00000411220 RGMAQ96B86 450 aa0.2□□□□□ -2.38
RNU4-88P-201ENST00000411220 SUSD3Q96L08 255 aa0.2□□□□□ -2.38
RNU4-88P-201ENST00000411220 HEXIM2Q96MH2 286 aaKnown RBP0.2□□□□□ -2.38
RNU4-88P-201ENST00000411220 ZNF778Q96MU6 729 aa0.2□□□□□ -2.38
RNU4-88P-201ENST00000411220 SH2B1Q9NRF2 756 aaPredicted RBP0.2□□□□□ -2.38
RNU4-88P-201ENST00000411220 CEP131Q9UPN4 1083 aa0.2□□□□□ -2.38
RNU4-88P-201ENST00000411220 TACC3Q9Y6A5 838 aa0.2□□□□□ -2.38
RNU4-88P-201ENST00000411220 CACNA1IQ9P0X4 2223 aa0.19□□□□□ -2.38
RNU4-88P-201ENST00000411220 CCDC187A0A096LP49 1063 aa0.19□□□□□ -2.38
RNU4-88P-201ENST00000411220 FITM1A5D6W6 292 aa0.19□□□□□ -2.38
RNU4-88P-201ENST00000411220 A6NJY4 79 aa0.19□□□□□ -2.38
RNU4-88P-201ENST00000411220 IGF2BP3O00425 579 aaKnown RBP eCLIP0.19□□□□□ -2.38
RNU4-88P-201ENST00000411220 LAMTOR5O43504 91 aa0.19□□□□□ -2.38
RNU4-88P-201ENST00000411220 RHOBTB3O94955 611 aa0.19□□□□□ -2.38
RNU4-88P-201ENST00000411220 ARL4DP49703 201 aa0.19□□□□□ -2.38
RNU4-88P-201ENST00000411220 CABP4P57796 275 aa0.19□□□□□ -2.38
RNU4-88P-201ENST00000411220 NR0B2Q15466 257 aa0.19□□□□□ -2.38
RNU4-88P-201ENST00000411220 RBM26Q5T8P6 1007 aaKnown RBP0.19□□□□□ -2.38
RNU4-88P-201ENST00000411220 FNDC7Q5VTL7 733 aa0.19□□□□□ -2.38
RNU4-88P-201ENST00000411220 CEP135Q66GS9 1140 aa0.19□□□□□ -2.38
RNU4-88P-201ENST00000411220 SP5Q6BEB4 398 aaPredicted RBP0.19□□□□□ -2.38
RNU4-88P-201ENST00000411220 RSBN1LQ6PCB5 846 aaPredicted RBP0.19□□□□□ -2.38
RNU4-88P-201ENST00000411220 IGDCC4Q8TDY8 1250 aa0.19□□□□□ -2.38
RNU4-88P-201ENST00000411220 ZDHHC1Q8WTX9 485 aa0.19□□□□□ -2.38
RNU4-88P-201ENST00000411220 SLC7A3Q8WY07 619 aa0.19□□□□□ -2.38
RNU4-88P-201ENST00000411220 DDX11Q96FC9 970 aa0.19□□□□□ -2.38
RNU4-88P-201ENST00000411220 QTRT2Q9H974 415 aaKnown RBP0.19□□□□□ -2.38
RNU4-88P-201ENST00000411220 PCDHB9Q9Y5E1 797 aa0.19□□□□□ -2.38
RNU4-88P-201ENST00000411220 PCDHA5Q9Y5H7 936 aa0.19□□□□□ -2.38
RNU4-88P-201ENST00000411220 SPRY2O43597 315 aa0.18□□□□□ -2.38
RNU4-88P-201ENST00000411220 GCP02774 474 aa0.18□□□□□ -2.38
RNU4-88P-201ENST00000411220 PSAPP07602 524 aa0.18□□□□□ -2.38
RNU4-88P-201ENST00000411220 C19orf57Q0VDD7 668 aa0.18□□□□□ -2.38
RNU4-88P-201ENST00000411220 TUBA3CQ13748 450 aa0.18□□□□□ -2.38
RNU4-88P-201ENST00000411220 MIDNQ504T8 468 aa0.18□□□□□ -2.38
RNU4-88P-201ENST00000411220 HS1BP3Q53T59 392 aa0.18□□□□□ -2.38
RNU4-88P-201ENST00000411220 TUBA3EQ6PEY2 450 aa0.18□□□□□ -2.38
RNU4-88P-201ENST00000411220 BORAQ6PGQ7 559 aa0.18□□□□□ -2.38
RNU4-88P-201ENST00000411220 RD3Q7Z3Z2 195 aa0.18□□□□□ -2.38
RNU4-88P-201ENST00000411220 EXTL1Q92935 676 aa0.18□□□□□ -2.38
RNU4-88P-201ENST00000411220 ADAMTS10Q9H324 1103 aa0.18□□□□□ -2.38
RNU4-88P-201ENST00000411220 GTF2IRD1Q9UHL9 959 aa0.18□□□□□ -2.38
RNU4-88P-201ENST00000411220 GNAT3A8MTJ3 354 aa0.17□□□□□ -2.38
RNU4-88P-201ENST00000411220 ABLIM1O14639 778 aa0.17□□□□□ -2.38
RNU4-88P-201ENST00000411220 SASH3O75995 380 aa0.17□□□□□ -2.38
RNU4-88P-201ENST00000411220 MSL3P1P0C860 447 aa0.17□□□□□ -2.38
RNU4-88P-201ENST00000411220 PRG2P13727 222 aa0.17□□□□□ -2.38
RNU4-88P-201ENST00000411220 EPB42P16452 691 aa0.17□□□□□ -2.38
RNU4-88P-201ENST00000411220 NOS2P35228 1153 aa0.17□□□□□ -2.38
RNU4-88P-201ENST00000411220 SCNN1DP51172 638 aa0.17□□□□□ -2.38
RNU4-88P-201ENST00000411220 YBX1P67809 324 aaKnown RBP0.17□□□□□ -2.38
RNU4-88P-201ENST00000411220 KIAA2012Q0VF49 1180 aa0.17□□□□□ -2.38
RNU4-88P-201ENST00000411220 FOXF2Q12947 444 aa0.17□□□□□ -2.38
RNU4-88P-201ENST00000411220 RAPGEF1Q13905 1077 aa0.17□□□□□ -2.38
RNU4-88P-201ENST00000411220 SURF1Q15526 300 aa0.17□□□□□ -2.38
RNU4-88P-201ENST00000411220 TEAD4Q15561 434 aa0.17□□□□□ -2.38
RNU4-88P-201ENST00000411220 ADAMTSL4Q6UY14 1074 aa0.17□□□□□ -2.38
RNU4-88P-201ENST00000411220 SH2D6Q7Z4S9 175 aa0.17□□□□□ -2.38
RNU4-88P-201ENST00000411220 ZC3H7AQ8IWR0 971 aaKnown RBP0.17□□□□□ -2.38
RNU4-88P-201ENST00000411220 CACTINQ8WUQ7 758 aaKnown RBP0.17□□□□□ -2.38
RNU4-88P-201ENST00000411220 CLIP3Q96DZ5 547 aa0.17□□□□□ -2.38
RNU4-88P-201ENST00000411220 PLEKHG4BQ96PX9 1271 aa0.17□□□□□ -2.38
RNU4-88P-201ENST00000411220 GSX1Q9H4S2 264 aaPredicted RBP0.17□□□□□ -2.38
RNU4-88P-201ENST00000411220 EGFL7Q9UHF1 273 aa0.17□□□□□ -2.38
RNU4-88P-201ENST00000411220 GPR160Q9UJ42 338 aa0.17□□□□□ -2.38
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms