RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 AMPD1P23109 780 aa9.05□□□□□ -0.96
USP40-202ENST00000409945 TRIM42Q8IWZ5 723 aa9.05□□□□□ -0.96
USP40-202ENST00000409945 CBX8Q9HC52 389 aa9.05□□□□□ -0.96
USP40-202ENST00000409945 PLEKHG1Q9ULL1 1385 aa9.05□□□□□ -0.96
USP40-202ENST00000409945 KIF1BO60333 1816 aa9.04□□□□□ -0.96
USP40-202ENST00000409945 FAM221AA4D161 298 aa9.04□□□□□ -0.96
USP40-202ENST00000409945 ATF4P18848 351 aaPredicted RBP9.04□□□□□ -0.96
USP40-202ENST00000409945 NME2P22392 152 aa9.04□□□□□ -0.96
USP40-202ENST00000409945 NLRP12P59046 1061 aa9.04□□□□□ -0.96
USP40-202ENST00000409945 LMNB2Q03252 620 aa9.04□□□□□ -0.96
USP40-202ENST00000409945 MAP1SQ66K74 1059 aaPredicted RBP9.04□□□□□ -0.96
USP40-202ENST00000409945 GMLQ99445 158 aa9.04□□□□□ -0.96
USP40-202ENST00000409945 MPHOSPH9Q99550 1183 aa9.04□□□□□ -0.96
USP40-202ENST00000409945 GINM1Q9NU53 330 aa9.04□□□□□ -0.96
USP40-202ENST00000409945 FOXD4L6Q3SYB3 417 aaPredicted RBP9.03□□□□□ -0.96
USP40-202ENST00000409945 FOXD4L3Q6VB84 417 aaPredicted RBP9.03□□□□□ -0.96
USP40-202ENST00000409945 TRIM11Q96F44 468 aa9.03□□□□□ -0.96
USP40-202ENST00000409945 DRC1Q96MC2 740 aa9.03□□□□□ -0.96
USP40-202ENST00000409945 DNAJC2Q99543 621 aaKnown RBP9.03□□□□□ -0.96
USP40-202ENST00000409945 CCDC144AA2RUR9 1427 aa9.03□□□□□ -0.96
USP40-202ENST00000409945 MYO5BQ9ULV0 1848 aa9.03□□□□□ -0.96
USP40-202ENST00000409945 LORP23490 312 aaPredicted RBP9.03□□□□□ -0.96
USP40-202ENST00000409945 SNAP47Q5SQN1 464 aa9.03□□□□□ -0.96
USP40-202ENST00000409945 WFDC8Q8IUA0 241 aa9.03□□□□□ -0.96
USP40-202ENST00000409945 SLC43A3Q8NBI5 491 aa9.03□□□□□ -0.96
USP40-202ENST00000409945 SLC26A8Q96RN1 970 aa9.03□□□□□ -0.96
USP40-202ENST00000409945 EFR3BQ9Y2G0 817 aa9.03□□□□□ -0.96
USP40-202ENST00000409945 ZFYVE9O95405 1425 aa9.03□□□□□ -0.96
USP40-202ENST00000409945 RPGRIP1LQ68CZ1 1315 aa9.02□□□□□ -0.96
USP40-202ENST00000409945 KCNA6P17658 529 aa9.02□□□□□ -0.97
USP40-202ENST00000409945 ARNTP27540 789 aa9.02□□□□□ -0.97
USP40-202ENST00000409945 PPP2R3AQ06190 1150 aa9.02□□□□□ -0.97
USP40-202ENST00000409945 FAM196AQ6ZSG2 479 aa9.02□□□□□ -0.97
USP40-202ENST00000409945 RASGRP4Q8TDF6 673 aa9.02□□□□□ -0.97
USP40-202ENST00000409945 CCDC86Q9H6F5 360 aaKnown RBP9.02□□□□□ -0.97
USP40-202ENST00000409945 ZFYVE1Q9HBF4 777 aa9.02□□□□□ -0.97
USP40-202ENST00000409945 RAB3GAP2Q9H2M9 1393 aa9.02□□□□□ -0.97
USP40-202ENST00000409945 FAM229AH3BQW9 127 aa9.01□□□□□ -0.97
USP40-202ENST00000409945 MAOBP27338 520 aa9.01□□□□□ -0.97
USP40-202ENST00000409945 LLGL2Q6P1M3 1020 aa9.01□□□□□ -0.97
USP40-202ENST00000409945 PPT2Q9UMR5 302 aa9.01□□□□□ -0.97
USP40-202ENST00000409945 TBX22Q9Y458 520 aa9.01□□□□□ -0.97
USP40-202ENST00000409945 DIP2AQ14689 1571 aa9.01□□□□□ -0.97
USP40-202ENST00000409945 WISP1O95388 367 aa9.01□□□□□ -0.97
USP40-202ENST00000409945 GSTP1P09211 210 aaKnown RBP9.01□□□□□ -0.97
USP40-202ENST00000409945 CABP4P57796 275 aa9.01□□□□□ -0.97
USP40-202ENST00000409945 RPS26P62854 115 aaKnown RBP9.01□□□□□ -0.97
USP40-202ENST00000409945 C19orf57Q0VDD7 668 aa9.01□□□□□ -0.97
USP40-202ENST00000409945 PWP1Q13610 501 aa9.01□□□□□ -0.97
USP40-202ENST00000409945 CCDC81Q6ZN84 652 aa9.01□□□□□ -0.97
USP40-202ENST00000409945 PRDM6Q9NQX0 595 aa9.01□□□□□ -0.97
USP40-202ENST00000409945 SUPT16HQ9Y5B9 1047 aaKnown RBP9.01□□□□□ -0.97
USP40-202ENST00000409945 PIK3R4Q99570 1358 aa9□□□□□ -0.97
USP40-202ENST00000409945 NASPP49321 788 aaPredicted RBP9□□□□□ -0.97
USP40-202ENST00000409945 SEZ6Q53EL9 994 aa9□□□□□ -0.97
USP40-202ENST00000409945 TREML4Q6UXN2 200 aa9□□□□□ -0.97
USP40-202ENST00000409945 KCNB2Q92953 911 aa9□□□□□ -0.97
USP40-202ENST00000409945 CACNA2D2Q9NY47 1150 aa9□□□□□ -0.97
USP40-202ENST00000409945 CLTCL1P53675 1640 aa9□□□□□ -0.97
USP40-202ENST00000409945 ZNF862O60290 1169 aa8.99□□□□□ -0.97
USP40-202ENST00000409945 GTF2F1P35269 517 aaKnown RBP eCLIP8.99□□□□□ -0.97
USP40-202ENST00000409945 PIP4K2BP78356 416 aa8.99□□□□□ -0.97
USP40-202ENST00000409945 ARID5AQ03989 594 aa8.99□□□□□ -0.97
USP40-202ENST00000409945 INPP5AQ14642 412 aa8.99□□□□□ -0.97
USP40-202ENST00000409945 SVOPQ8N4V2 548 aa8.99□□□□□ -0.97
USP40-202ENST00000409945 GPBAR1Q8TDU6 330 aa8.99□□□□□ -0.97
USP40-202ENST00000409945 UBASH3BQ8TF42 649 aa8.99□□□□□ -0.97
USP40-202ENST00000409945 NT5C1AQ9BXI3 368 aa8.99□□□□□ -0.97
USP40-202ENST00000409945 MRVI1Q9Y6F6 885 aa8.99□□□□□ -0.97
USP40-202ENST00000409945 NKTRP30414 1462 aaKnown RBP8.99□□□□□ -0.97
USP40-202ENST00000409945 APOBRQ0VD83 1088 aa8.99□□□□□ -0.97
USP40-202ENST00000409945 GATAD2BQ8WXI9 593 aa8.99□□□□□ -0.97
USP40-202ENST00000409945 MIR1-1HGQ9H1L0 117 aa8.99□□□□□ -0.97
USP40-202ENST00000409945 LRRC7Q96NW7 1537 aa8.98□□□□□ -0.97
USP40-202ENST00000409945 LOC100289279A0A1B0GTE1 492 aa8.98□□□□□ -0.97
USP40-202ENST00000409945 RLBP1P12271 317 aa8.98□□□□□ -0.97
USP40-202ENST00000409945 LINC00114Q6XXX2 140 aa8.98□□□□□ -0.97
USP40-202ENST00000409945 USP26Q9BXU7 913 aa8.98□□□□□ -0.97
USP40-202ENST00000409945 RRAGCQ9HB90 399 aa8.98□□□□□ -0.97
USP40-202ENST00000409945 MSH6P52701 1360 aa8.98□□□□□ -0.97
USP40-202ENST00000409945 CILPO75339 1184 aa8.97□□□□□ -0.97
USP40-202ENST00000409945 ARHGEF15O94989 841 aa8.97□□□□□ -0.97
USP40-202ENST00000409945 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.97□□□□□ -0.97
USP40-202ENST00000409945 SOX17Q9H6I2 414 aaPredicted RBP8.97□□□□□ -0.97
USP40-202ENST00000409945 LRRC4BQ9NT99 713 aa8.97□□□□□ -0.97
USP40-202ENST00000409945 CYP8B1Q9UNU6 501 aa8.97□□□□□ -0.97
USP40-202ENST00000409945 POLR3KQ9Y2Y1 108 aaPredicted RBP8.97□□□□□ -0.97
USP40-202ENST00000409945 GRIN3BO60391 1043 aa8.97□□□□□ -0.97
USP40-202ENST00000409945 LIG1P18858 919 aa8.97□□□□□ -0.97
USP40-202ENST00000409945 GNL2Q13823 731 aaKnown RBP8.97□□□□□ -0.97
USP40-202ENST00000409945 BRMS1Q9HCU9 246 aa8.97□□□□□ -0.97
USP40-202ENST00000409945 ANKRD30BQ9BXX2 1392 aa8.97□□□□□ -0.97
USP40-202ENST00000409945 FAM177BA6PVY3 158 aa8.96□□□□□ -0.97
USP40-202ENST00000409945 SOX9P48436 509 aa8.96□□□□□ -0.97
USP40-202ENST00000409945 POU4F3Q15319 338 aa8.96□□□□□ -0.97
USP40-202ENST00000409945 RGL3Q3MIN7 710 aa8.96□□□□□ -0.97
USP40-202ENST00000409945 TMEM94Q12767 1356 aa8.96□□□□□ -0.97
USP40-202ENST00000409945 RBAK-RBAKDNI3L0D1 243 aa8.95□□□□□ -0.98
USP40-202ENST00000409945 ETFBP38117 255 aa8.95□□□□□ -0.98
USP40-202ENST00000409945 SF3A1Q15459 793 aaKnown RBP8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms