RNA–Protein interactions for RNA: ENST00000409810.6

CHMP3-205, Transcript of charged multivesicular body protein 3, humanhuman

TSL 5

Gene CHMP3, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-205ENST00000409810 USP17L21D6R901 530 aa13.04□□□□□ -0.32
CHMP3-205ENST00000409810 SDSP20132 328 aa13.04□□□□□ -0.32
CHMP3-205ENST00000409810 GABPAQ06546 454 aa13.04□□□□□ -0.32
CHMP3-205ENST00000409810 SBK1Q52WX2 424 aa13.04□□□□□ -0.32
CHMP3-205ENST00000409810 C12orf60Q5U649 245 aa13.04□□□□□ -0.32
CHMP3-205ENST00000409810 BRI3BPQ8WY22 251 aa13.04□□□□□ -0.32
CHMP3-205ENST00000409810 SEC62Q99442 399 aaKnown RBP13.04□□□□□ -0.32
CHMP3-205ENST00000409810 NAPBQ9H115 298 aa13.04□□□□□ -0.32
CHMP3-205ENST00000409810 ZCCHC17Q9NP64 241 aaKnown RBP13.04□□□□□ -0.32
CHMP3-205ENST00000409810 CABP5Q9NP86 173 aa13.04□□□□□ -0.32
CHMP3-205ENST00000409810 PRDM10Q9NQV6 1147 aa13.04□□□□□ -0.32
CHMP3-205ENST00000409810 ZBTB21Q9ULJ3 1066 aa13.04□□□□□ -0.32
CHMP3-205ENST00000409810 AFG3L2Q9Y4W6 797 aa13.04□□□□□ -0.32
CHMP3-205ENST00000409810 LOC285556D6RIA3 1793 aa13.03□□□□□ -0.32
CHMP3-205ENST00000409810 IGF2BP3O00425 579 aaKnown RBP eCLIP13.03□□□□□ -0.32
CHMP3-205ENST00000409810 GDF11O95390 407 aa13.03□□□□□ -0.32
CHMP3-205ENST00000409810 CYP2D6P10635 497 aa13.03□□□□□ -0.32
CHMP3-205ENST00000409810 LBX1P52954 281 aa13.03□□□□□ -0.32
CHMP3-205ENST00000409810 ABCB5Q2M3G0 1257 aa13.03□□□□□ -0.32
CHMP3-205ENST00000409810 CTR9Q6PD62 1173 aa13.03□□□□□ -0.32
CHMP3-205ENST00000409810 FASTKD5Q7L8L6 764 aaKnown RBP13.03□□□□□ -0.32
CHMP3-205ENST00000409810 ZNF280CQ8ND82 737 aa13.03□□□□□ -0.32
CHMP3-205ENST00000409810 CFHR5Q9BXR6 569 aa13.03□□□□□ -0.32
CHMP3-205ENST00000409810 ZNF287Q9HBT7 754 aa13.03□□□□□ -0.32
CHMP3-205ENST00000409810 TSKSQ9UJT2 592 aa13.03□□□□□ -0.32
CHMP3-205ENST00000409810 A0A0D9SFI3 127 aa13.02□□□□□ -0.33
CHMP3-205ENST00000409810 A0A0G2JLL6 359 aaPredicted RBP13.02□□□□□ -0.33
CHMP3-205ENST00000409810 TRIM75PA6NK02 468 aa13.02□□□□□ -0.33
CHMP3-205ENST00000409810 MINDY4BA8MYZ0 360 aa13.02□□□□□ -0.33
CHMP3-205ENST00000409810 SLC3A2P08195 630 aaKnown RBP13.02□□□□□ -0.33
CHMP3-205ENST00000409810 GSPT1P15170 499 aaKnown RBP13.02□□□□□ -0.33
CHMP3-205ENST00000409810 SHMT1P34896 483 aa13.02□□□□□ -0.33
CHMP3-205ENST00000409810 NMIQ13287 307 aaPredicted RBP13.02□□□□□ -0.33
CHMP3-205ENST00000409810 RRP1BQ14684 758 aaKnown RBP13.02□□□□□ -0.33
CHMP3-205ENST00000409810 CCDC129Q6ZRS4 1044 aa13.02□□□□□ -0.33
CHMP3-205ENST00000409810 C16orf86Q6ZW13 317 aa13.02□□□□□ -0.33
CHMP3-205ENST00000409810 PRRT2Q7Z6L0 340 aaPredicted RBP13.02□□□□□ -0.33
CHMP3-205ENST00000409810 IFNL3Q8IZI9 196 aa13.02□□□□□ -0.33
CHMP3-205ENST00000409810 CCDC17Q96LX7 622 aa13.02□□□□□ -0.33
CHMP3-205ENST00000409810 FAM227BQ96M60 508 aa13.02□□□□□ -0.33
CHMP3-205ENST00000409810 EPB41L4AQ9HCS5 686 aaPredicted RBP13.02□□□□□ -0.33
CHMP3-205ENST00000409810 CCDC171Q6TFL3 1326 aa13.02□□□□□ -0.33
CHMP3-205ENST00000409810 ROBO3Q96MS0 1386 aa13.02□□□□□ -0.33
CHMP3-205ENST00000409810 CYP2D7A0A087X1C5 515 aa13.01□□□□□ -0.33
CHMP3-205ENST00000409810 BTBD19C9JJ37 291 aa13.01□□□□□ -0.33
CHMP3-205ENST00000409810 MPHOSPH10O00566 681 aaKnown RBP13.01□□□□□ -0.33
CHMP3-205ENST00000409810 GH2P01242 217 aa13.01□□□□□ -0.33
CHMP3-205ENST00000409810 SPP2Q13103 211 aa13.01□□□□□ -0.33
CHMP3-205ENST00000409810 TAF1CQ15572 869 aaPredicted RBP13.01□□□□□ -0.33
CHMP3-205ENST00000409810 NOM1Q5C9Z4 860 aaKnown RBP13.01□□□□□ -0.33
CHMP3-205ENST00000409810 ANKRD23Q86SG2 305 aa13.01□□□□□ -0.33
CHMP3-205ENST00000409810 DYNLL2Q96FJ2 89 aa13.01□□□□□ -0.33
CHMP3-205ENST00000409810 PTPN18Q99952 460 aa13.01□□□□□ -0.33
CHMP3-205ENST00000409810 WDR18Q9BV38 432 aa13.01□□□□□ -0.33
CHMP3-205ENST00000409810 ZFYVE28Q9HCC9 887 aa13.01□□□□□ -0.33
CHMP3-205ENST00000409810 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.01□□□□□ -0.33
CHMP3-205ENST00000409810 ZMYM6O95789 1325 aa13□□□□□ -0.33
CHMP3-205ENST00000409810 RAD50Q92878 1312 aa13□□□□□ -0.33
CHMP3-205ENST00000409810 C19orf81C9J6K1 198 aa13□□□□□ -0.33
CHMP3-205ENST00000409810 TBC1D8O95759 1140 aa13□□□□□ -0.33
CHMP3-205ENST00000409810 CDK8P49336 464 aa13□□□□□ -0.33
CHMP3-205ENST00000409810 PDE4BQ07343 736 aa13□□□□□ -0.33
CHMP3-205ENST00000409810 RAB3GAP1Q15042 981 aa13□□□□□ -0.33
CHMP3-205ENST00000409810 CWC27Q6UX04 472 aaKnown RBP13□□□□□ -0.33
CHMP3-205ENST00000409810 GADL1Q6ZQY3 521 aa13□□□□□ -0.33
CHMP3-205ENST00000409810 TMEM179Q6ZVK1 233 aa13□□□□□ -0.33
CHMP3-205ENST00000409810 CCDC84Q86UT8 332 aaPredicted RBP13□□□□□ -0.33
CHMP3-205ENST00000409810 PROCA1Q8NCQ7 364 aaPredicted RBP13□□□□□ -0.33
CHMP3-205ENST00000409810 SLC44A5Q8NCS7 719 aa13□□□□□ -0.33
CHMP3-205ENST00000409810 RUFY2Q8WXA3 655 aa13□□□□□ -0.33
CHMP3-205ENST00000409810 PARK7Q99497 189 aaKnown RBP13□□□□□ -0.33
CHMP3-205ENST00000409810 PPP4R2Q9NY27 417 aa13□□□□□ -0.33
CHMP3-205ENST00000409810 TMOD4Q9NZQ9 345 aa13□□□□□ -0.33
CHMP3-205ENST00000409810 SLC45A1Q9Y2W3 748 aa13□□□□□ -0.33
CHMP3-205ENST00000409810 LAMA4Q16363 1823 aa12.99□□□□□ -0.33
CHMP3-205ENST00000409810 USP17L10C9JJH3 530 aa12.99□□□□□ -0.33
CHMP3-205ENST00000409810 USP14P54578 494 aa12.99□□□□□ -0.33
CHMP3-205ENST00000409810 BACE1P56817 501 aa12.99□□□□□ -0.33
CHMP3-205ENST00000409810 EVX2Q03828 476 aa12.99□□□□□ -0.33
CHMP3-205ENST00000409810 PPARAQ07869 468 aa12.99□□□□□ -0.33
CHMP3-205ENST00000409810 PABPC4Q13310 644 aaKnown RBP eCLIP12.99□□□□□ -0.33
CHMP3-205ENST00000409810 CRHR2Q13324 411 aa12.99□□□□□ -0.33
CHMP3-205ENST00000409810 MTMR2Q13614 643 aa12.99□□□□□ -0.33
CHMP3-205ENST00000409810 ALX1Q15699 326 aa12.99□□□□□ -0.33
CHMP3-205ENST00000409810 ZNF589Q86UQ0 364 aaPredicted RBP12.99□□□□□ -0.33
CHMP3-205ENST00000409810 FAM43AQ8N2R8 423 aa12.99□□□□□ -0.33
CHMP3-205ENST00000409810 FEZ1Q99689 392 aa12.99□□□□□ -0.33
CHMP3-205ENST00000409810 MKNK2Q9HBH9 465 aa12.99□□□□□ -0.33
CHMP3-205ENST00000409810 PNMA3Q9UL41 463 aa12.99□□□□□ -0.33
CHMP3-205ENST00000409810 AGTPBP1Q9UPW5 1226 aa12.99□□□□□ -0.33
CHMP3-205ENST00000409810 GREB1LQ9C091 1923 aaPredicted RBP12.99□□□□□ -0.33
CHMP3-205ENST00000409810 MYH4Q9Y623 1939 aa12.99□□□□□ -0.33
CHMP3-205ENST00000409810 GPR25O00155 361 aa12.98□□□□□ -0.33
CHMP3-205ENST00000409810 PDHXO00330 501 aa12.98□□□□□ -0.33
CHMP3-205ENST00000409810 HSPD1P10809 573 aaKnown RBP12.98□□□□□ -0.33
CHMP3-205ENST00000409810 HMGCS2P54868 508 aa12.98□□□□□ -0.33
CHMP3-205ENST00000409810 SH3D19Q5HYK7 790 aa12.98□□□□□ -0.33
CHMP3-205ENST00000409810 VPS53Q5VIR6 699 aa12.98□□□□□ -0.33
CHMP3-205ENST00000409810 USP17L2Q6R6M4 530 aa12.98□□□□□ -0.33
CHMP3-205ENST00000409810 SH2D4AQ9H788 454 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms