RNA–Protein interactions for RNA: ENST00000399275.6

SMAD9-203, Transcript of SMAD family member 9, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMAD9, Length 5,389 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD9-203ENST00000399275 C16orf87Q6PH81 154 aa10.65□□□□□ -0.7
SMAD9-203ENST00000399275 FCHSD1Q86WN1 690 aa10.65□□□□□ -0.7
SMAD9-203ENST00000399275 NME8Q8N427 588 aa10.65□□□□□ -0.7
SMAD9-203ENST00000399275 TRIM58Q8NG06 486 aa10.65□□□□□ -0.7
SMAD9-203ENST00000399275 LRRC2Q9BYS8 371 aa10.65□□□□□ -0.7
SMAD9-203ENST00000399275 WDR7Q9Y4E6 1490 aa10.65□□□□□ -0.7
SMAD9-203ENST00000399275 A0A1B0GVL5 298 aa10.65□□□□□ -0.7
SMAD9-203ENST00000399275 INPP1P49441 399 aa10.65□□□□□ -0.7
SMAD9-203ENST00000399275 TNIP1Q15025 636 aa10.65□□□□□ -0.7
SMAD9-203ENST00000399275 TMEM67Q5HYA8 995 aa10.65□□□□□ -0.7
SMAD9-203ENST00000399275 ANKRD20A3Q5VUR7 823 aa10.65□□□□□ -0.7
SMAD9-203ENST00000399275 CCDC80Q76M96 950 aa10.65□□□□□ -0.7
SMAD9-203ENST00000399275 GFM2Q969S9 779 aaKnown RBP10.65□□□□□ -0.7
SMAD9-203ENST00000399275 HVCN1Q96D96 273 aa10.65□□□□□ -0.7
SMAD9-203ENST00000399275 MCF2LO15068 1137 aa10.65□□□□□ -0.71
SMAD9-203ENST00000399275 PDE6BP35913 854 aa10.65□□□□□ -0.71
SMAD9-203ENST00000399275 LMNB2Q03252 620 aa10.65□□□□□ -0.71
SMAD9-203ENST00000399275 RASSF10A6NK89 507 aa10.64□□□□□ -0.71
SMAD9-203ENST00000399275 EVA1CP58658 441 aa10.64□□□□□ -0.71
SMAD9-203ENST00000399275 FAM69CQ0P6D2 419 aa10.64□□□□□ -0.71
SMAD9-203ENST00000399275 SLFNL1Q499Z3 407 aa10.64□□□□□ -0.71
SMAD9-203ENST00000399275 SLC26A6Q9BXS9 759 aa10.64□□□□□ -0.71
SMAD9-203ENST00000399275 G3V3G9 751 aa10.64□□□□□ -0.71
SMAD9-203ENST00000399275 KRT13P13646 458 aa10.64□□□□□ -0.71
SMAD9-203ENST00000399275 ERCC5P28715 1186 aaPredicted RBP10.64□□□□□ -0.71
SMAD9-203ENST00000399275 TPP2P29144 1249 aaPredicted RBP10.64□□□□□ -0.71
SMAD9-203ENST00000399275 DCAF8Q5TAQ9 597 aa10.64□□□□□ -0.71
SMAD9-203ENST00000399275 SND1Q7KZF4 910 aaKnown RBP eCLIP10.64□□□□□ -0.71
SMAD9-203ENST00000399275 CACTINQ8WUQ7 758 aaKnown RBP10.64□□□□□ -0.71
SMAD9-203ENST00000399275 FGD4Q96M96 766 aa10.64□□□□□ -0.71
SMAD9-203ENST00000399275 BCORL1Q5H9F3 1711 aa10.64□□□□□ -0.71
SMAD9-203ENST00000399275 CAND2O75155 1236 aa10.64□□□□□ -0.71
SMAD9-203ENST00000399275 WBP4O75554 376 aaKnown RBP10.64□□□□□ -0.71
SMAD9-203ENST00000399275 CCDC15Q0P6D6 951 aa10.64□□□□□ -0.71
SMAD9-203ENST00000399275 IDI1Q13907 227 aa10.64□□□□□ -0.71
SMAD9-203ENST00000399275 EIF4A2Q14240 407 aaKnown RBP10.64□□□□□ -0.71
SMAD9-203ENST00000399275 C8orf74Q6P047 294 aa10.64□□□□□ -0.71
SMAD9-203ENST00000399275 FAM204AQ9H8W3 233 aa10.64□□□□□ -0.71
SMAD9-203ENST00000399275 HELLSQ9NRZ9 838 aa10.64□□□□□ -0.71
SMAD9-203ENST00000399275 GIMAP4Q9NUV9 329 aa10.64□□□□□ -0.71
SMAD9-203ENST00000399275 BABAM1Q9NWV8 329 aa10.64□□□□□ -0.71
SMAD9-203ENST00000399275 ARHGEF5Q12774 1597 aa10.64□□□□□ -0.71
SMAD9-203ENST00000399275 ABCC1P33527 1531 aa10.64□□□□□ -0.71
SMAD9-203ENST00000399275 HSPA1LP34931 641 aa10.64□□□□□ -0.71
SMAD9-203ENST00000399275 APOBRQ0VD83 1088 aa10.64□□□□□ -0.71
SMAD9-203ENST00000399275 IFT20Q8IY31 132 aa10.64□□□□□ -0.71
SMAD9-203ENST00000399275 KRI1Q8N9T8 703 aaKnown RBP10.64□□□□□ -0.71
SMAD9-203ENST00000399275 BATF3Q9NR55 127 aa10.64□□□□□ -0.71
SMAD9-203ENST00000399275 A0A087WZG4 1122 aa10.63□□□□□ -0.71
SMAD9-203ENST00000399275 CHL1O00533 1208 aa10.63□□□□□ -0.71
SMAD9-203ENST00000399275 ZBTB43O43298 467 aa10.63□□□□□ -0.71
SMAD9-203ENST00000399275 CFAP61Q8NHU2 1237 aa10.63□□□□□ -0.71
SMAD9-203ENST00000399275 CTTNBP2NLQ9P2B4 639 aa10.63□□□□□ -0.71
SMAD9-203ENST00000399275 FANCAO15360 1455 aa10.63□□□□□ -0.71
SMAD9-203ENST00000399275 PHLPP2Q6ZVD8 1323 aa10.63□□□□□ -0.71
SMAD9-203ENST00000399275 MRPS15P82914 257 aaKnown RBP10.63□□□□□ -0.71
SMAD9-203ENST00000399275 KSR2Q6VAB6 950 aa10.63□□□□□ -0.71
SMAD9-203ENST00000399275 TRIM47Q96LD4 638 aa10.63□□□□□ -0.71
SMAD9-203ENST00000399275 MPHOSPH6Q99547 160 aaKnown RBP10.63□□□□□ -0.71
SMAD9-203ENST00000399275 XPO4Q9C0E2 1151 aaKnown RBP10.63□□□□□ -0.71
SMAD9-203ENST00000399275 PDE11AQ9HCR9 933 aa10.63□□□□□ -0.71
SMAD9-203ENST00000399275 TTC21AQ8NDW8 1320 aa10.63□□□□□ -0.71
SMAD9-203ENST00000399275 GRM8O00222 908 aa10.63□□□□□ -0.71
SMAD9-203ENST00000399275 EEF1DP29692 281 aaKnown RBP10.63□□□□□ -0.71
SMAD9-203ENST00000399275 ATP2B3Q16720 1220 aa10.63□□□□□ -0.71
SMAD9-203ENST00000399275 METTL24Q5JXM2 366 aa10.63□□□□□ -0.71
SMAD9-203ENST00000399275 CYP26C1Q6V0L0 522 aa10.63□□□□□ -0.71
SMAD9-203ENST00000399275 MICU3Q86XE3 530 aa10.63□□□□□ -0.71
SMAD9-203ENST00000399275 ENAHQ8N8S7 591 aaPredicted RBP10.63□□□□□ -0.71
SMAD9-203ENST00000399275 COQ7Q99807 217 aa10.63□□□□□ -0.71
SMAD9-203ENST00000399275 AATFQ9NY61 560 aaKnown RBP eCLIP10.63□□□□□ -0.71
SMAD9-203ENST00000399275 KRT7P08729 469 aa10.63□□□□□ -0.71
SMAD9-203ENST00000399275 RAP1GDS1P52306 607 aa10.63□□□□□ -0.71
SMAD9-203ENST00000399275 NCBP1Q09161 790 aaKnown RBP10.63□□□□□ -0.71
SMAD9-203ENST00000399275 MAP3K12Q12852 859 aa10.63□□□□□ -0.71
SMAD9-203ENST00000399275 HSP90AA4PQ58FG1 418 aa10.63□□□□□ -0.71
SMAD9-203ENST00000399275 CCDC25Q86WR0 208 aa10.63□□□□□ -0.71
SMAD9-203ENST00000399275 MLKLQ8NB16 471 aa10.63□□□□□ -0.71
SMAD9-203ENST00000399275 HELBQ8NG08 1087 aaPredicted RBP10.63□□□□□ -0.71
SMAD9-203ENST00000399275 ATP6V0A1Q93050 837 aa10.63□□□□□ -0.71
SMAD9-203ENST00000399275 TMTC2Q8N394 836 aa10.62□□□□□ -0.71
SMAD9-203ENST00000399275 RABGGTAQ92696 567 aa10.62□□□□□ -0.71
SMAD9-203ENST00000399275 TRIM11Q96F44 468 aa10.62□□□□□ -0.71
SMAD9-203ENST00000399275 CHPF2Q9P2E5 772 aa10.62□□□□□ -0.71
SMAD9-203ENST00000399275 PALD1Q9ULE6 856 aa10.62□□□□□ -0.71
SMAD9-203ENST00000399275 TTC37Q6PGP7 1564 aa10.62□□□□□ -0.71
SMAD9-203ENST00000399275 FLOT1O75955 427 aa10.62□□□□□ -0.71
SMAD9-203ENST00000399275 GCFC2P16383 781 aaKnown RBP10.62□□□□□ -0.71
SMAD9-203ENST00000399275 IL13P35225 146 aa10.62□□□□□ -0.71
SMAD9-203ENST00000399275 ATP1A2P50993 1020 aa10.62□□□□□ -0.71
SMAD9-203ENST00000399275 ANO1Q5XXA6 986 aa10.62□□□□□ -0.71
SMAD9-203ENST00000399275 HIBCHQ6NVY1 386 aaPredicted RBP10.62□□□□□ -0.71
SMAD9-203ENST00000399275 FAM173BQ6P4H8 233 aa10.62□□□□□ -0.71
SMAD9-203ENST00000399275 IGSF22Q8N9C0 903 aa10.62□□□□□ -0.71
SMAD9-203ENST00000399275 ZSWIM6Q9HCJ5 1215 aa10.62□□□□□ -0.71
SMAD9-203ENST00000399275 PMS1P54277 932 aaKnown RBP10.62□□□□□ -0.71
SMAD9-203ENST00000399275 ME3Q16798 604 aa10.62□□□□□ -0.71
SMAD9-203ENST00000399275 CATIPQ7Z7H3 387 aa10.62□□□□□ -0.71
SMAD9-203ENST00000399275 TMTC1Q8IUR5 882 aa10.62□□□□□ -0.71
SMAD9-203ENST00000399275 RAB34Q9BZG1 259 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms