RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 GDF11O95390 407 aa12.62□□□□□ -0.39
NEDD8-202ENST00000396828 SGPL1O95470 568 aa12.62□□□□□ -0.39
NEDD8-202ENST00000396828 MAP4K4O95819 1239 aaPredicted RBP12.62□□□□□ -0.39
NEDD8-202ENST00000396828 UBXN2AP68543 259 aa12.62□□□□□ -0.39
NEDD8-202ENST00000396828 TRIM32Q13049 653 aa12.62□□□□□ -0.39
NEDD8-202ENST00000396828 OS9Q13438 667 aaPredicted RBP12.62□□□□□ -0.39
NEDD8-202ENST00000396828 SH3D19Q5HYK7 790 aa12.62□□□□□ -0.39
NEDD8-202ENST00000396828 CCDC158Q5M9N0 1113 aa12.62□□□□□ -0.39
NEDD8-202ENST00000396828 CHRDL2Q6WN34 429 aa12.62□□□□□ -0.39
NEDD8-202ENST00000396828 METTL16Q86W50 562 aaKnown RBP12.62□□□□□ -0.39
NEDD8-202ENST00000396828 PROCA1Q8NCQ7 364 aaPredicted RBP12.62□□□□□ -0.39
NEDD8-202ENST00000396828 DEFB118Q96PH6 123 aa12.62□□□□□ -0.39
NEDD8-202ENST00000396828 PI4KBQ9UBF8 816 aa12.62□□□□□ -0.39
NEDD8-202ENST00000396828 SAP30BPQ9UHR5 308 aaKnown RBP12.62□□□□□ -0.39
NEDD8-202ENST00000396828 GJD2Q9UKL4 321 aa12.62□□□□□ -0.39
NEDD8-202ENST00000396828 NOP58Q9Y2X3 529 aaKnown RBP12.62□□□□□ -0.39
NEDD8-202ENST00000396828 LAMA2P24043 3122 aaKnown RBP12.62□□□□□ -0.39
NEDD8-202ENST00000396828 IRF5Q13568 498 aa12.61□□□□□ -0.39
NEDD8-202ENST00000396828 MTMR2Q13614 643 aa12.61□□□□□ -0.39
NEDD8-202ENST00000396828 FAM110CQ1W6H9 321 aa12.61□□□□□ -0.39
NEDD8-202ENST00000396828 POTEEQ6S8J3 1075 aa12.61□□□□□ -0.39
NEDD8-202ENST00000396828 NKX2-3Q8TAU0 364 aa12.61□□□□□ -0.39
NEDD8-202ENST00000396828 PXYLP1Q8TE99 480 aa12.61□□□□□ -0.39
NEDD8-202ENST00000396828 ZNF512BQ96KM6 892 aaPredicted RBP12.61□□□□□ -0.39
NEDD8-202ENST00000396828 P2RX7Q99572 595 aaKnown RBP12.61□□□□□ -0.39
NEDD8-202ENST00000396828 ANTXR1Q9H6X2 564 aa12.61□□□□□ -0.39
NEDD8-202ENST00000396828 RBM27Q9P2N5 1060 aaKnown RBP12.61□□□□□ -0.39
NEDD8-202ENST00000396828 HERC5Q9UII4 1024 aaKnown RBP12.61□□□□□ -0.39
NEDD8-202ENST00000396828 BAG3O95817 575 aa12.6□□□□□ -0.39
NEDD8-202ENST00000396828 MIGA1Q8NAN2 632 aa12.6□□□□□ -0.39
NEDD8-202ENST00000396828 NOL10Q9BSC4 688 aaKnown RBP12.6□□□□□ -0.39
NEDD8-202ENST00000396828 WDR18Q9BV38 432 aa12.6□□□□□ -0.39
NEDD8-202ENST00000396828 DHX36Q9H2U1 1008 aaKnown RBP12.6□□□□□ -0.39
NEDD8-202ENST00000396828 TXNRD2Q9NNW7 524 aa12.6□□□□□ -0.39
NEDD8-202ENST00000396828 PAK6Q9NQU5 681 aaPredicted RBP12.6□□□□□ -0.39
NEDD8-202ENST00000396828 ZBTB40Q9NUA8 1239 aa12.6□□□□□ -0.39
NEDD8-202ENST00000396828 PNMA3Q9UL41 463 aa12.6□□□□□ -0.39
NEDD8-202ENST00000396828 ALPK3Q96L96 1907 aa12.6□□□□□ -0.39
NEDD8-202ENST00000396828 FARP2O94887 1054 aaPredicted RBP12.59□□□□□ -0.39
NEDD8-202ENST00000396828 CYP7A1P22680 504 aa12.59□□□□□ -0.39
NEDD8-202ENST00000396828 BACE1P56817 501 aa12.59□□□□□ -0.39
NEDD8-202ENST00000396828 EVX2Q03828 476 aa12.59□□□□□ -0.39
NEDD8-202ENST00000396828 CEP85Q6P2H3 762 aa12.59□□□□□ -0.39
NEDD8-202ENST00000396828 DIS3LQ8TF46 1054 aaKnown RBP12.59□□□□□ -0.39
NEDD8-202ENST00000396828 COA7Q96BR5 231 aa12.59□□□□□ -0.39
NEDD8-202ENST00000396828 PRO3102Q9H379 93 aa12.59□□□□□ -0.39
NEDD8-202ENST00000396828 EXOC6BQ9Y2D4 811 aa12.59□□□□□ -0.39
NEDD8-202ENST00000396828 MYH1P12882 1939 aa12.58□□□□□ -0.39
NEDD8-202ENST00000396828 IDH1O75874 414 aaKnown RBP12.58□□□□□ -0.4
NEDD8-202ENST00000396828 TFRCP02786 760 aaKnown RBP12.58□□□□□ -0.4
NEDD8-202ENST00000396828 ASNSP08243 561 aa12.58□□□□□ -0.4
NEDD8-202ENST00000396828 GCLCP48506 637 aaPredicted RBP12.58□□□□□ -0.4
NEDD8-202ENST00000396828 Q3C1V9 767 aa12.58□□□□□ -0.4
NEDD8-202ENST00000396828 B4GALNT3Q6L9W6 998 aa12.58□□□□□ -0.4
NEDD8-202ENST00000396828 FOXP4Q8IVH2 680 aaPredicted RBP12.58□□□□□ -0.4
NEDD8-202ENST00000396828 CRACR2BQ8N4Y2 399 aaPredicted RBP12.58□□□□□ -0.4
NEDD8-202ENST00000396828 MAGEB6Q8N7X4 407 aa12.58□□□□□ -0.4
NEDD8-202ENST00000396828 PAWRQ96IZ0 340 aaKnown RBP12.58□□□□□ -0.4
NEDD8-202ENST00000396828 TBC1D2Q9BYX2 928 aa12.58□□□□□ -0.4
NEDD8-202ENST00000396828 CRISPLD2Q9H0B8 497 aa12.58□□□□□ -0.4
NEDD8-202ENST00000396828 AS3MTQ9HBK9 375 aa12.58□□□□□ -0.4
NEDD8-202ENST00000396828 EMILIN3Q9NT22 766 aa12.58□□□□□ -0.4
NEDD8-202ENST00000396828 RBPJLQ9UBG7 517 aa12.58□□□□□ -0.4
NEDD8-202ENST00000396828 MORF4L1Q9UBU8 362 aa12.58□□□□□ -0.4
NEDD8-202ENST00000396828 ZBTB21Q9ULJ3 1066 aa12.58□□□□□ -0.4
NEDD8-202ENST00000396828 A0A0C4DFX4 3053 aa12.58□□□□□ -0.4
NEDD8-202ENST00000396828 PLCG2P16885 1265 aa12.57□□□□□ -0.4
NEDD8-202ENST00000396828 HOXA7P31268 230 aaPredicted RBP12.57□□□□□ -0.4
NEDD8-202ENST00000396828 MNX1P50219 401 aaPredicted RBP12.57□□□□□ -0.4
NEDD8-202ENST00000396828 TRIB2Q92519 343 aa12.57□□□□□ -0.4
NEDD8-202ENST00000396828 USP17L10C9JJH3 530 aa12.56□□□□□ -0.4
NEDD8-202ENST00000396828 GH2P01242 217 aa12.56□□□□□ -0.4
NEDD8-202ENST00000396828 CYP2B6P20813 491 aa12.56□□□□□ -0.4
NEDD8-202ENST00000396828 HERVK_113P62684 666 aa12.56□□□□□ -0.4
NEDD8-202ENST00000396828 PABPC4Q13310 644 aaKnown RBP eCLIP12.56□□□□□ -0.45e-9■■■■□ 19.8
NEDD8-202ENST00000396828 TATDN1Q6P1N9 297 aa12.56□□□□□ -0.4
NEDD8-202ENST00000396828 HTATIP2Q9BUP3 242 aa12.56□□□□□ -0.4
NEDD8-202ENST00000396828 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.56□□□□□ -0.4
NEDD8-202ENST00000396828 PORCNQ9H237 461 aa12.56□□□□□ -0.4
NEDD8-202ENST00000396828 RWDD1Q9H446 243 aaPredicted RBP12.56□□□□□ -0.4
NEDD8-202ENST00000396828 IL1RAPL2Q9NP60 686 aa12.56□□□□□ -0.4
NEDD8-202ENST00000396828 HMGCRP04035 888 aa12.55□□□□□ -0.4
NEDD8-202ENST00000396828 PLCD1P51178 756 aa12.55□□□□□ -0.4
NEDD8-202ENST00000396828 IRX3P78415 501 aaPredicted RBP12.55□□□□□ -0.4
NEDD8-202ENST00000396828 ZYXQ15942 572 aaKnown RBP12.55□□□□□ -0.4
NEDD8-202ENST00000396828 AACSQ86V21 672 aa12.55□□□□□ -0.4
NEDD8-202ENST00000396828 RPAP2Q8IXW5 612 aaPredicted RBP12.55□□□□□ -0.4
NEDD8-202ENST00000396828 ACER1Q8TDN7 264 aa12.55□□□□□ -0.4
NEDD8-202ENST00000396828 RIOK1Q9BRS2 568 aaKnown RBP12.55□□□□□ -0.4
NEDD8-202ENST00000396828 TMOD4Q9NZQ9 345 aa12.55□□□□□ -0.4
NEDD8-202ENST00000396828 DDX60LQ5H9U9 1706 aaKnown RBP12.54□□□□□ -0.4
NEDD8-202ENST00000396828 C19orf81C9J6K1 198 aa12.54□□□□□ -0.4
NEDD8-202ENST00000396828 CNMDO75829 334 aa12.54□□□□□ -0.4
NEDD8-202ENST00000396828 SHMT1P34896 483 aa12.54□□□□□ -0.4
NEDD8-202ENST00000396828 USP5P45974 858 aa12.54□□□□□ -0.4
NEDD8-202ENST00000396828 CCL14Q16627 93 aa12.54□□□□□ -0.4
NEDD8-202ENST00000396828 SLFNL1Q499Z3 407 aa12.54□□□□□ -0.4
NEDD8-202ENST00000396828 MAP3K21Q5TCX8 1036 aa12.54□□□□□ -0.4
NEDD8-202ENST00000396828 SIRT2Q8IXJ6 389 aa12.54□□□□□ -0.4
NEDD8-202ENST00000396828 GPRC5AQ8NFJ5 357 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms