RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 KRIT1O00522 736 aa13.12□□□□□ -0.31
SYNPO-202ENST00000394243 TAF11Q15544 211 aa13.12□□□□□ -0.31
SYNPO-202ENST00000394243 UHMK1Q8TAS1 419 aaKnown RBP13.12□□□□□ -0.31
SYNPO-202ENST00000394243 C6orf229H3BNL8 230 aa13.12□□□□□ -0.31
SYNPO-202ENST00000394243 FBLN1P23142 703 aa13.12□□□□□ -0.31
SYNPO-202ENST00000394243 IL15P40933 162 aaPredicted RBP13.12□□□□□ -0.31
SYNPO-202ENST00000394243 ICE2Q659A1 982 aa13.12□□□□□ -0.31
SYNPO-202ENST00000394243 HVCN1Q96D96 273 aa13.12□□□□□ -0.31
SYNPO-202ENST00000394243 NRBP1Q9UHY1 535 aa13.12□□□□□ -0.31
SYNPO-202ENST00000394243 FLOT1O75955 427 aa13.12□□□□□ -0.31
SYNPO-202ENST00000394243 SUN1O94901 812 aa13.12□□□□□ -0.31
SYNPO-202ENST00000394243 FAM69CQ0P6D2 419 aa13.12□□□□□ -0.31
SYNPO-202ENST00000394243 NAA16Q6N069 864 aaPredicted RBP13.12□□□□□ -0.31
SYNPO-202ENST00000394243 NUCKS1Q9H1E3 243 aaKnown RBP13.12□□□□□ -0.31
SYNPO-202ENST00000394243 EFCAB5A4FU69 1503 aa13.12□□□□□ -0.31
SYNPO-202ENST00000394243 HECW1Q76N89 1606 aa13.11□□□□□ -0.31
SYNPO-202ENST00000394243 ASXL1Q8IXJ9 1541 aa13.11□□□□□ -0.31
SYNPO-202ENST00000394243 FAM170AA1A519 330 aa13.11□□□□□ -0.31
SYNPO-202ENST00000394243 VPS41P49754 854 aa13.11□□□□□ -0.31
SYNPO-202ENST00000394243 PPP2R5CQ13362 524 aa13.11□□□□□ -0.31
SYNPO-202ENST00000394243 LIN9Q5TKA1 542 aa13.11□□□□□ -0.31
SYNPO-202ENST00000394243 DPH5Q9H2P9 285 aa13.11□□□□□ -0.31
SYNPO-202ENST00000394243 MRPL46Q9H2W6 279 aaKnown RBP13.11□□□□□ -0.31
SYNPO-202ENST00000394243 FAM207AQ9NSI2 230 aaPredicted RBP13.11□□□□□ -0.31
SYNPO-202ENST00000394243 SCOCQ9UIL1 159 aa13.11□□□□□ -0.31
SYNPO-202ENST00000394243 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.11□□□□□ -0.31
SYNPO-202ENST00000394243 TTC21BQ7Z4L5 1316 aa13.11□□□□□ -0.31
SYNPO-202ENST00000394243 ZBTB21Q9ULJ3 1066 aa13.11□□□□□ -0.31
SYNPO-202ENST00000394243 MYCNP04198 464 aaPredicted RBP13.11□□□□□ -0.31
SYNPO-202ENST00000394243 GSTO1P78417 241 aa13.11□□□□□ -0.31
SYNPO-202ENST00000394243 ZKSCAN8Q15776 578 aaPredicted RBP13.11□□□□□ -0.31
SYNPO-202ENST00000394243 KLHDC4Q8TBB5 520 aa13.11□□□□□ -0.31
SYNPO-202ENST00000394243 STX10O60499 249 aa13.11□□□□□ -0.31
SYNPO-202ENST00000394243 RAD51AP2Q09MP3 1159 aa13.11□□□□□ -0.31
SYNPO-202ENST00000394243 WDR44Q5JSH3 913 aa13.11□□□□□ -0.31
SYNPO-202ENST00000394243 SRGAP1Q7Z6B7 1085 aa13.11□□□□□ -0.31
SYNPO-202ENST00000394243 LCA5Q86VQ0 697 aa13.11□□□□□ -0.31
SYNPO-202ENST00000394243 MAGEB6Q8N7X4 407 aa13.11□□□□□ -0.31
SYNPO-202ENST00000394243 SOS1Q07889 1333 aaPredicted RBP13.11□□□□□ -0.31
SYNPO-202ENST00000394243 CASC4Q6P4E1 433 aa13.11□□□□□ -0.31
SYNPO-202ENST00000394243 PIK3AP1Q6ZUJ8 805 aa13.11□□□□□ -0.31
SYNPO-202ENST00000394243 TSPYL6Q8N831 410 aa13.11□□□□□ -0.31
SYNPO-202ENST00000394243 KIAA1468Q9P260 1216 aa13.11□□□□□ -0.31
SYNPO-202ENST00000394243 AMFRQ9UKV5 643 aa13.11□□□□□ -0.31
SYNPO-202ENST00000394243 SYNJ2O15056 1496 aa13.11□□□□□ -0.31
SYNPO-202ENST00000394243 GUCY2CP25092 1073 aa13.11□□□□□ -0.31
SYNPO-202ENST00000394243 OR8K1Q8NGG5 319 aa13.11□□□□□ -0.31
SYNPO-202ENST00000394243 P3H4Q92791 437 aa13.11□□□□□ -0.31
SYNPO-202ENST00000394243 CALUO43852 315 aaPredicted RBP13.1□□□□□ -0.31
SYNPO-202ENST00000394243 MAN1A1P33908 653 aa13.1□□□□□ -0.31
SYNPO-202ENST00000394243 EXOC4Q96A65 974 aa13.1□□□□□ -0.31
SYNPO-202ENST00000394243 MYO1AQ9UBC5 1043 aa13.1□□□□□ -0.31
SYNPO-202ENST00000394243 NUTM2BA6NNL0 878 aaPredicted RBP13.1□□□□□ -0.31
SYNPO-202ENST00000394243 NUTM2EB1AL46 878 aaPredicted RBP13.1□□□□□ -0.31
SYNPO-202ENST00000394243 GIPC1O14908 333 aa13.1□□□□□ -0.31
SYNPO-202ENST00000394243 BUB1O43683 1085 aa13.1□□□□□ -0.31
SYNPO-202ENST00000394243 VAMP4O75379 141 aa13.1□□□□□ -0.31
SYNPO-202ENST00000394243 ALDH1L1O75891 902 aa13.1□□□□□ -0.31
SYNPO-202ENST00000394243 XAGE3Q8WTP9 111 aa13.1□□□□□ -0.31
SYNPO-202ENST00000394243 NLRC4Q9NPP4 1024 aa13.1□□□□□ -0.31
SYNPO-202ENST00000394243 PTPN23Q9H3S7 1636 aa13.1□□□□□ -0.31
SYNPO-202ENST00000394243 JAK2O60674 1132 aa13.1□□□□□ -0.31
SYNPO-202ENST00000394243 GNAT2P19087 354 aa13.1□□□□□ -0.31
SYNPO-202ENST00000394243 IFNAR2P48551 515 aa13.1□□□□□ -0.31
SYNPO-202ENST00000394243 TFCP2Q12800 502 aa13.1□□□□□ -0.31
SYNPO-202ENST00000394243 MIGA1Q8NAN2 632 aa13.1□□□□□ -0.31
SYNPO-202ENST00000394243 PPP4R1Q8TF05 950 aa13.1□□□□□ -0.31
SYNPO-202ENST00000394243 STAMQ92783 540 aa13.1□□□□□ -0.31
SYNPO-202ENST00000394243 TSC22D3Q99576 134 aa13.1□□□□□ -0.31
SYNPO-202ENST00000394243 BIRC3Q13489 604 aa13.1□□□□□ -0.31
SYNPO-202ENST00000394243 PTPROQ16827 1216 aa13.1□□□□□ -0.31
SYNPO-202ENST00000394243 SCAF11Q99590 1463 aaKnown RBP13.1□□□□□ -0.31
SYNPO-202ENST00000394243 DEXIO95424 95 aa13.1□□□□□ -0.31
SYNPO-202ENST00000394243 PDZD8Q8NEN9 1154 aa13.1□□□□□ -0.31
SYNPO-202ENST00000394243 BLZF1Q9H2G9 400 aa13.1□□□□□ -0.31
SYNPO-202ENST00000394243 SBNO1A3KN83 1393 aa13.09□□□□□ -0.31
SYNPO-202ENST00000394243 PSDA5PKW4 1024 aaPredicted RBP13.09□□□□□ -0.31
SYNPO-202ENST00000394243 ZBTB7BO15156 539 aaPredicted RBP13.09□□□□□ -0.31
SYNPO-202ENST00000394243 CCNT1O60563 726 aaKnown RBP13.09□□□□□ -0.31
SYNPO-202ENST00000394243 GUCY2DQ02846 1103 aa13.09□□□□□ -0.31
SYNPO-202ENST00000394243 FAM133BQ5BKY9 247 aaKnown RBP13.09□□□□□ -0.31
SYNPO-202ENST00000394243 MAGEA9P43362 315 aa13.09□□□□□ -0.31
SYNPO-202ENST00000394243 CCDC93Q567U6 631 aa13.09□□□□□ -0.31
SYNPO-202ENST00000394243 ATP2A3Q93084 1043 aa13.09□□□□□ -0.31
SYNPO-202ENST00000394243 INTS9Q9NV88 658 aaKnown RBP13.09□□□□□ -0.31
SYNPO-202ENST00000394243 B4E1Z4 1266 aa13.09□□□□□ -0.31
SYNPO-202ENST00000394243 ZMYND10O75800 440 aa13.09□□□□□ -0.31
SYNPO-202ENST00000394243 PHEXP78562 749 aa13.09□□□□□ -0.31
SYNPO-202ENST00000394243 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.09□□□□□ -0.31
SYNPO-202ENST00000394243 COPS6Q7L5N1 327 aa13.09□□□□□ -0.31
SYNPO-202ENST00000394243 CTAGE3PQ8IX95 158 aa13.09□□□□□ -0.31
SYNPO-202ENST00000394243 FBXO41Q8TF61 875 aa13.09□□□□□ -0.31
SYNPO-202ENST00000394243 RPRD2Q5VT52 1461 aaKnown RBP13.09□□□□□ -0.31
SYNPO-202ENST00000394243 MYO1CO00159 1063 aa13.09□□□□□ -0.31
SYNPO-202ENST00000394243 APBA1Q02410 837 aa13.09□□□□□ -0.31
SYNPO-202ENST00000394243 NXNQ6DKJ4 435 aa13.09□□□□□ -0.31
SYNPO-202ENST00000394243 SPDL1Q96EA4 605 aa13.09□□□□□ -0.31
SYNPO-202ENST00000394243 MSH6P52701 1360 aa13.09□□□□□ -0.31
SYNPO-202ENST00000394243 SNRPA1P09661 255 aaKnown RBP13.09□□□□□ -0.31
SYNPO-202ENST00000394243 KSR2Q6VAB6 950 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms