RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 TESMINQ9Y4I5 508 aa1.29□□□□□ -2.2
RNU6-540P-201ENST00000384622 NFKBIEO00221 500 aa1.28□□□□□ -2.2
RNU6-540P-201ENST00000384622 TULP1O00294 542 aaPredicted RBP1.28□□□□□ -2.2
RNU6-540P-201ENST00000384622 C21orf2O43822 256 aa1.28□□□□□ -2.2
RNU6-540P-201ENST00000384622 EIF4G2P78344 907 aaKnown RBP eCLIP1.28□□□□□ -2.2
RNU6-540P-201ENST00000384622 R3HDM1Q15032 1099 aaKnown RBP1.28□□□□□ -2.2
RNU6-540P-201ENST00000384622 POU4F3Q15319 338 aa1.28□□□□□ -2.2
RNU6-540P-201ENST00000384622 COLEC12Q5KU26 742 aa1.28□□□□□ -2.2
RNU6-540P-201ENST00000384622 THAP5Q7Z6K1 395 aa1.28□□□□□ -2.2
RNU6-540P-201ENST00000384622 SPPL2CQ8IUH8 684 aa1.28□□□□□ -2.2
RNU6-540P-201ENST00000384622 ZNF366Q8N895 744 aa1.28□□□□□ -2.2
RNU6-540P-201ENST00000384622 ZNF526Q8TF50 670 aaPredicted RBP1.28□□□□□ -2.2
RNU6-540P-201ENST00000384622 PRDM14Q9GZV8 571 aa1.28□□□□□ -2.2
RNU6-540P-201ENST00000384622 ZSWIM5Q9P217 1185 aa1.28□□□□□ -2.2
RNU6-540P-201ENST00000384622 NOD1Q9Y239 953 aa1.28□□□□□ -2.2
RNU6-540P-201ENST00000384622 TACC3Q9Y6A5 838 aa1.28□□□□□ -2.2
RNU6-540P-201ENST00000384622 ATAD2Q6PL18 1390 aa1.28□□□□□ -2.2
RNU6-540P-201ENST00000384622 ANKRD33BA6NCL7 494 aa1.27□□□□□ -2.21
RNU6-540P-201ENST00000384622 RAMP2O60895 175 aa1.27□□□□□ -2.21
RNU6-540P-201ENST00000384622 ESRRAP11474 423 aaPredicted RBP1.27□□□□□ -2.21
RNU6-540P-201ENST00000384622 HCLS1P14317 486 aaPredicted RBP1.27□□□□□ -2.21
RNU6-540P-201ENST00000384622 LIMS1P48059 325 aa1.27□□□□□ -2.21
RNU6-540P-201ENST00000384622 NCKAP1LP55160 1127 aa1.27□□□□□ -2.21
RNU6-540P-201ENST00000384622 TTLL4Q14679 1199 aa1.27□□□□□ -2.21
RNU6-540P-201ENST00000384622 SKIV2LQ15477 1246 aaKnown RBP1.27□□□□□ -2.21
RNU6-540P-201ENST00000384622 BBC3Q96PG8 261 aaPredicted RBP1.27□□□□□ -2.21
RNU6-540P-201ENST00000384622 FANCD2OSQ96PS1 177 aa1.27□□□□□ -2.21
RNU6-540P-201ENST00000384622 CORO1BQ9BR76 489 aa1.27□□□□□ -2.21
RNU6-540P-201ENST00000384622 GGNBP2Q9H3C7 697 aa1.27□□□□□ -2.21
RNU6-540P-201ENST00000384622 PRDM5Q9NQX1 630 aaPredicted RBP1.27□□□□□ -2.21
RNU6-540P-201ENST00000384622 SH3D21A4FU49 640 aa1.26□□□□□ -2.21
RNU6-540P-201ENST00000384622 UBAP1LF5GYI3 381 aa1.26□□□□□ -2.21
RNU6-540P-201ENST00000384622 ABLIM1O14639 778 aa1.26□□□□□ -2.21
RNU6-540P-201ENST00000384622 TMPRSS2O15393 492 aa1.26□□□□□ -2.21
RNU6-540P-201ENST00000384622 TRPA1O75762 1119 aa1.26□□□□□ -2.21
RNU6-540P-201ENST00000384622 ESR1P03372 595 aa1.26□□□□□ -2.21
RNU6-540P-201ENST00000384622 CYP2E1P05181 493 aaPredicted RBP1.26□□□□□ -2.21
RNU6-540P-201ENST00000384622 ZGLP1P0C6A0 271 aa1.26□□□□□ -2.21
RNU6-540P-201ENST00000384622 SELENOPP49908 381 aa1.26□□□□□ -2.21
RNU6-540P-201ENST00000384622 SCRN1Q12765 414 aa1.26□□□□□ -2.21
RNU6-540P-201ENST00000384622 C11orf91Q3C1V1 193 aa1.26□□□□□ -2.21
RNU6-540P-201ENST00000384622 LSM12Q3MHD2 195 aaKnown RBP1.26□□□□□ -2.21
RNU6-540P-201ENST00000384622 PCSK4Q6UW60 755 aa1.26□□□□□ -2.21
RNU6-540P-201ENST00000384622 PHF6Q8IWS0 365 aaKnown RBP eCLIP1.26□□□□□ -2.21
RNU6-540P-201ENST00000384622 CARFQ8N187 725 aa1.26□□□□□ -2.21
RNU6-540P-201ENST00000384622 MFSD4AQ8N468 514 aa1.26□□□□□ -2.21
RNU6-540P-201ENST00000384622 WDR18Q9BV38 432 aa1.26□□□□□ -2.21
RNU6-540P-201ENST00000384622 PRDM10Q9NQV6 1147 aa1.26□□□□□ -2.21
RNU6-540P-201ENST00000384622 DZANK1Q9NVP4 752 aa1.26□□□□□ -2.21
RNU6-540P-201ENST00000384622 MAPK8IP1Q9UQF2 711 aa1.26□□□□□ -2.21
RNU6-540P-201ENST00000384622 INVSQ9Y283 1065 aa1.26□□□□□ -2.21
RNU6-540P-201ENST00000384622 PCDHA5Q9Y5H7 936 aa1.26□□□□□ -2.21
RNU6-540P-201ENST00000384622 ST14Q9Y5Y6 855 aa1.26□□□□□ -2.21
RNU6-540P-201ENST00000384622 SYNGAP1Q96PV0 1343 aa1.25□□□□□ -2.21
RNU6-540P-201ENST00000384622 PRR33A8MZF0 331 aa1.25□□□□□ -2.21
RNU6-540P-201ENST00000384622 ACPPP15309 386 aa1.25□□□□□ -2.21
RNU6-540P-201ENST00000384622 YBX1P67809 324 aaKnown RBP1.25□□□□□ -2.21
RNU6-540P-201ENST00000384622 PDE3AQ14432 1141 aa1.25□□□□□ -2.21
RNU6-540P-201ENST00000384622 NRN1LQ496H8 165 aa1.25□□□□□ -2.21
RNU6-540P-201ENST00000384622 PEAR1Q5VY43 1037 aaPredicted RBP1.25□□□□□ -2.21
RNU6-540P-201ENST00000384622 GAREM2Q75VX8 874 aa1.25□□□□□ -2.21
RNU6-540P-201ENST00000384622 SAPCD2Q86UD0 394 aa1.25□□□□□ -2.21
RNU6-540P-201ENST00000384622 GAS2L2Q8NHY3 880 aa1.25□□□□□ -2.21
RNU6-540P-201ENST00000384622 FNIP1Q8TF40 1166 aa1.25□□□□□ -2.21
RNU6-540P-201ENST00000384622 SCG3Q8WXD2 468 aaKnown RBP1.25□□□□□ -2.21
RNU6-540P-201ENST00000384622 DHX38Q92620 1227 aaKnown RBP1.25□□□□□ -2.21
RNU6-540P-201ENST00000384622 SYTL4Q96C24 671 aaPredicted RBP1.25□□□□□ -2.21
RNU6-540P-201ENST00000384622 ECEL1O95672 775 aa1.24□□□□□ -2.21
RNU6-540P-201ENST00000384622 NUDT3O95989 172 aa1.24□□□□□ -2.21
RNU6-540P-201ENST00000384622 ADH4P08319 380 aa1.24□□□□□ -2.21
RNU6-540P-201ENST00000384622 SLFN14P0C7P3 912 aa1.24□□□□□ -2.21
RNU6-540P-201ENST00000384622 CD38P28907 300 aa1.24□□□□□ -2.21
RNU6-540P-201ENST00000384622 RFC5P40937 340 aa1.24□□□□□ -2.21
RNU6-540P-201ENST00000384622 ID3Q02535 119 aa1.24□□□□□ -2.21
RNU6-540P-201ENST00000384622 PTH1RQ03431 593 aa1.24□□□□□ -2.21
RNU6-540P-201ENST00000384622 CHRNEQ04844 493 aa1.24□□□□□ -2.21
RNU6-540P-201ENST00000384622 TRIP4Q15650 581 aaPredicted RBP1.24□□□□□ -2.21
RNU6-540P-201ENST00000384622 CRELD2Q6UXH1 353 aaPredicted RBP1.24□□□□□ -2.21
RNU6-540P-201ENST00000384622 RNF207Q6ZRF8 634 aa1.24□□□□□ -2.21
RNU6-540P-201ENST00000384622 TMC6Q7Z403 805 aa1.24□□□□□ -2.21
RNU6-540P-201ENST00000384622 CREG2Q8IUH2 290 aa1.24□□□□□ -2.21
RNU6-540P-201ENST00000384622 LGI4Q8N135 537 aa1.24□□□□□ -2.21
RNU6-540P-201ENST00000384622 TMEM102Q8N9M5 508 aaPredicted RBP1.24□□□□□ -2.21
RNU6-540P-201ENST00000384622 TPCN2Q8NHX9 752 aa1.24□□□□□ -2.21
RNU6-540P-201ENST00000384622 SCARB1Q8WTV0 552 aa1.24□□□□□ -2.21
RNU6-540P-201ENST00000384622 ADGRE3Q9BY15 652 aa1.24□□□□□ -2.21
RNU6-540P-201ENST00000384622 UTP3Q9NQZ2 479 aaKnown RBP eCLIP1.24□□□□□ -2.21
RNU6-540P-201ENST00000384622 DISC1Q9NRI5 854 aa1.24□□□□□ -2.21
RNU6-540P-201ENST00000384622 ABI2Q9NYB9 513 aaPredicted RBP1.24□□□□□ -2.21
RNU6-540P-201ENST00000384622 NPEPPSL1A6NEC2 478 aa1.23□□□□□ -2.21
RNU6-540P-201ENST00000384622 EOMESO95936 686 aa1.23□□□□□ -2.21
RNU6-540P-201ENST00000384622 MSL3P1P0C860 447 aa1.23□□□□□ -2.21
RNU6-540P-201ENST00000384622 PFKLP17858 780 aa1.23□□□□□ -2.21
RNU6-540P-201ENST00000384622 SDHBP21912 280 aa1.23□□□□□ -2.21
RNU6-540P-201ENST00000384622 ADRA1BP35368 520 aa1.23□□□□□ -2.21
RNU6-540P-201ENST00000384622 COL10A1Q03692 680 aa1.23□□□□□ -2.21
RNU6-540P-201ENST00000384622 KIAA2012Q0VF49 1180 aa1.23□□□□□ -2.21
RNU6-540P-201ENST00000384622 LCE3AQ5TA76 89 aa1.23□□□□□ -2.21
RNU6-540P-201ENST00000384622 ZNF761Q86XN6 746 aaPredicted RBP1.23□□□□□ -2.21
RNU6-540P-201ENST00000384622 TSEN2Q8NCE0 465 aaKnown RBP1.23□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms