RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 UPF3AQ9H1J1 476 aaKnown RBP9.64□□□□□ -0.87
LIG3-202ENST00000378526 SYBUQ9NX95 663 aa9.64□□□□□ -0.87
LIG3-202ENST00000378526 SLC12A2P55011 1212 aa9.64□□□□□ -0.87
LIG3-202ENST00000378526 C1orf115Q9H7X2 142 aa9.64□□□□□ -0.87
LIG3-202ENST00000378526 NPHP3Q7Z494 1330 aa9.64□□□□□ -0.87
LIG3-202ENST00000378526 SPOPO43791 374 aa9.64□□□□□ -0.87
LIG3-202ENST00000378526 KRT6AP02538 564 aa9.64□□□□□ -0.87
LIG3-202ENST00000378526 KRT6BP04259 564 aa9.64□□□□□ -0.87
LIG3-202ENST00000378526 KRT6CP48668 564 aa9.64□□□□□ -0.87
LIG3-202ENST00000378526 COPB1P53618 953 aaKnown RBP9.64□□□□□ -0.87
LIG3-202ENST00000378526 RABGGTAQ92696 567 aa9.64□□□□□ -0.87
LIG3-202ENST00000378526 NAPBQ9H115 298 aa9.64□□□□□ -0.87
LIG3-202ENST00000378526 FAM177BA6PVY3 158 aa9.63□□□□□ -0.87
LIG3-202ENST00000378526 MYL5Q02045 173 aa9.63□□□□□ -0.87
LIG3-202ENST00000378526 CCDC80Q76M96 950 aa9.63□□□□□ -0.87
LIG3-202ENST00000378526 GID8Q9NWU2 228 aa9.63□□□□□ -0.87
LIG3-202ENST00000378526 QKIQ96PU8 341 aaKnown RBP eCLIP9.63□□□□□ -0.87
LIG3-202ENST00000378526 ZNF213O14771 459 aa9.63□□□□□ -0.87
LIG3-202ENST00000378526 SPAG7O75391 227 aa9.63□□□□□ -0.87
LIG3-202ENST00000378526 DCTN3O75935 186 aa9.63□□□□□ -0.87
LIG3-202ENST00000378526 RPL13P26373 211 aaKnown RBP9.63□□□□□ -0.87
LIG3-202ENST00000378526 GUCY1A3Q02108 690 aa9.63□□□□□ -0.87
LIG3-202ENST00000378526 MPP4Q96JB8 637 aa9.63□□□□□ -0.87
LIG3-202ENST00000378526 FAM8A1Q9UBU6 413 aa9.63□□□□□ -0.87
LIG3-202ENST00000378526 ABCC9O60706 1549 aa9.63□□□□□ -0.87
LIG3-202ENST00000378526 ESYT2A0FGR8 921 aa9.63□□□□□ -0.87
LIG3-202ENST00000378526 CCDC78A2IDD5 438 aa9.63□□□□□ -0.87
LIG3-202ENST00000378526 GOLGA8IPA6NC78 632 aa9.63□□□□□ -0.87
LIG3-202ENST00000378526 H0Y626 953 aa9.63□□□□□ -0.87
LIG3-202ENST00000378526 TRIM16O95361 564 aa9.63□□□□□ -0.87
LIG3-202ENST00000378526 IARSP41252 1262 aaKnown RBP9.63□□□□□ -0.87
LIG3-202ENST00000378526 PRPF40BQ6NWY9 871 aaKnown RBP9.63□□□□□ -0.87
LIG3-202ENST00000378526 SND1Q7KZF4 910 aaKnown RBP eCLIP9.63□□□□□ -0.87
LIG3-202ENST00000378526 MGARPQ8TDB4 240 aa9.63□□□□□ -0.87
LIG3-202ENST00000378526 GDPD2Q9HCC8 539 aa9.63□□□□□ -0.87
LIG3-202ENST00000378526 RRAGDQ9NQL2 400 aaPredicted RBP9.63□□□□□ -0.87
LIG3-202ENST00000378526 TUBA8Q9NY65 449 aaPredicted RBP9.63□□□□□ -0.87
LIG3-202ENST00000378526 TRPC5Q9UL62 973 aaPredicted RBP9.63□□□□□ -0.87
LIG3-202ENST00000378526 PYGMP11217 842 aa9.63□□□□□ -0.87
LIG3-202ENST00000378526 CNGA2Q16280 664 aa9.63□□□□□ -0.87
LIG3-202ENST00000378526 KRT12Q99456 494 aa9.63□□□□□ -0.87
LIG3-202ENST00000378526 PPME1Q9Y570 386 aa9.63□□□□□ -0.87
LIG3-202ENST00000378526 FAM13AO94988 1023 aa9.62□□□□□ -0.87
LIG3-202ENST00000378526 DACT1Q9NYF0 836 aa9.62□□□□□ -0.87
LIG3-202ENST00000378526 CAPN11Q9UMQ6 739 aa9.62□□□□□ -0.87
LIG3-202ENST00000378526 PRR23D1E9PI22 279 aaPredicted RBP9.62□□□□□ -0.87
LIG3-202ENST00000378526 PRR23D2P0DMB1 279 aaPredicted RBP9.62□□□□□ -0.87
LIG3-202ENST00000378526 SERPINB1P30740 379 aa9.62□□□□□ -0.87
LIG3-202ENST00000378526 RAD51AP2Q09MP3 1159 aa9.62□□□□□ -0.87
LIG3-202ENST00000378526 TEDDM1Q5T9Z0 273 aa9.62□□□□□ -0.87
LIG3-202ENST00000378526 LIN9Q5TKA1 542 aa9.62□□□□□ -0.87
LIG3-202ENST00000378526 ZKSCAN3Q9BRR0 538 aa9.62□□□□□ -0.87
LIG3-202ENST00000378526 ARID5AQ03989 594 aa9.62□□□□□ -0.87
LIG3-202ENST00000378526 NXNQ6DKJ4 435 aa9.62□□□□□ -0.87
LIG3-202ENST00000378526 ST13P5Q8NFI4 369 aaPredicted RBP9.62□□□□□ -0.87
LIG3-202ENST00000378526 TMCC1O94876 653 aa9.62□□□□□ -0.87
LIG3-202ENST00000378526 AP2B1P63010 937 aa9.62□□□□□ -0.87
LIG3-202ENST00000378526 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.62□□□□□ -0.87
LIG3-202ENST00000378526 CALR3Q96L12 384 aaKnown RBP9.62□□□□□ -0.87
LIG3-202ENST00000378526 RAD21L1Q9H4I0 556 aa9.62□□□□□ -0.87
LIG3-202ENST00000378526 KLHL31Q9H511 634 aa9.62□□□□□ -0.87
LIG3-202ENST00000378526 VPS37BQ9H9H4 285 aa9.62□□□□□ -0.87
LIG3-202ENST00000378526 SNX5Q9Y5X3 404 aa9.62□□□□□ -0.87
LIG3-202ENST00000378526 NBPF26B4DH59 902 aa9.62□□□□□ -0.87
LIG3-202ENST00000378526 CEP78Q5JTW2 689 aa9.62□□□□□ -0.87
LIG3-202ENST00000378526 NBPF14Q5TI25 921 aa9.62□□□□□ -0.87
LIG3-202ENST00000378526 NBPF15Q8N660 670 aa9.62□□□□□ -0.87
LIG3-202ENST00000378526 RNF169Q8NCN4 708 aa9.62□□□□□ -0.87
LIG3-202ENST00000378526 ICA1LQ8NDH6 482 aa9.62□□□□□ -0.87
LIG3-202ENST00000378526 OR9Q1Q8NGQ5 310 aa9.62□□□□□ -0.87
LIG3-202ENST00000378526 CNBD2Q96M20 576 aa9.62□□□□□ -0.87
LIG3-202ENST00000378526 TEX12Q9BXU0 123 aa9.62□□□□□ -0.87
LIG3-202ENST00000378526 LRRIQ3A6PVS8 624 aaPredicted RBP9.62□□□□□ -0.87
LIG3-202ENST00000378526 PRKG1Q13976 671 aa9.62□□□□□ -0.87
LIG3-202ENST00000378526 MAML3Q96JK9 1138 aa9.62□□□□□ -0.87
LIG3-202ENST00000378526 ARHGDIAP52565 204 aa9.62□□□□□ -0.87
LIG3-202ENST00000378526 PPP2R5DQ14738 602 aa9.62□□□□□ -0.87
LIG3-202ENST00000378526 SLFNL1Q499Z3 407 aa9.62□□□□□ -0.87
LIG3-202ENST00000378526 ARHGEF18Q6ZSZ5 1173 aa9.62□□□□□ -0.87
LIG3-202ENST00000378526 IGSF22Q8N9C0 903 aa9.62□□□□□ -0.87
LIG3-202ENST00000378526 CHMP6Q96FZ7 201 aa9.62□□□□□ -0.87
LIG3-202ENST00000378526 INTS9Q9NV88 658 aaKnown RBP9.62□□□□□ -0.87
LIG3-202ENST00000378526 CNPY2Q9Y2B0 182 aa9.62□□□□□ -0.87
LIG3-202ENST00000378526 CFAP73A6NFT4 308 aa9.61□□□□□ -0.87
LIG3-202ENST00000378526 MAPK13O15264 365 aa9.61□□□□□ -0.87
LIG3-202ENST00000378526 ZNF445P59923 1031 aa9.61□□□□□ -0.87
LIG3-202ENST00000378526 DAB2P98082 770 aa9.61□□□□□ -0.87
LIG3-202ENST00000378526 RASA3Q14644 834 aa9.61□□□□□ -0.87
LIG3-202ENST00000378526 UBE3BQ7Z3V4 1068 aa9.61□□□□□ -0.87
LIG3-202ENST00000378526 CCDC51Q96ER9 411 aa9.61□□□□□ -0.87
LIG3-202ENST00000378526 STAT2P52630 851 aa9.61□□□□□ -0.87
LIG3-202ENST00000378526 SLC9C1Q4G0N8 1177 aa9.61□□□□□ -0.87
LIG3-202ENST00000378526 ATG16L1Q676U5 607 aa9.61□□□□□ -0.87
LIG3-202ENST00000378526 HYOU1Q9Y4L1 999 aa9.61□□□□□ -0.87
LIG3-202ENST00000378526 MYO1CO00159 1063 aa9.61□□□□□ -0.87
LIG3-202ENST00000378526 TTI1O43156 1089 aa9.61□□□□□ -0.87
LIG3-202ENST00000378526 HOXA7P31268 230 aaPredicted RBP9.61□□□□□ -0.87
LIG3-202ENST00000378526 KIF23Q02241 960 aaPredicted RBP9.61□□□□□ -0.87
LIG3-202ENST00000378526 PPP6R3Q5H9R7 873 aaPredicted RBP9.61□□□□□ -0.87
LIG3-202ENST00000378526 NCAPG2Q86XI2 1143 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms