RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 LMNB1P20700 586 aa4.09□□□□□ -1.76
VPS13A-206ENST00000376646 CDKAL1Q5VV42 579 aa4.09□□□□□ -1.76
VPS13A-206ENST00000376646 LRRN4CLQ8ND94 238 aa4.09□□□□□ -1.76
VPS13A-206ENST00000376646 MISP3Q96FF7 219 aa4.09□□□□□ -1.76
VPS13A-206ENST00000376646 FOXQ1Q9C009 403 aa4.09□□□□□ -1.76
VPS13A-206ENST00000376646 TNKS2Q9H2K2 1166 aa4.09□□□□□ -1.76
VPS13A-206ENST00000376646 PRDM5Q9NQX1 630 aaPredicted RBP4.09□□□□□ -1.76
VPS13A-206ENST00000376646 GTF2IRD1Q9UHL9 959 aa4.09□□□□□ -1.76
VPS13A-206ENST00000376646 CORINQ9Y5Q5 1042 aa4.09□□□□□ -1.76
VPS13A-206ENST00000376646 PRRG2O14669 202 aa4.08□□□□□ -1.76
VPS13A-206ENST00000376646 FGD1P98174 961 aa4.08□□□□□ -1.76
VPS13A-206ENST00000376646 XPCQ01831 940 aaPredicted RBP4.08□□□□□ -1.76
VPS13A-206ENST00000376646 IKZF1Q13422 519 aa4.08□□□□□ -1.76
VPS13A-206ENST00000376646 BNC2Q6ZN30 1099 aaPredicted RBP4.08□□□□□ -1.76
VPS13A-206ENST00000376646 PI4K2BQ8TCG2 481 aa4.08□□□□□ -1.76
VPS13A-206ENST00000376646 MIR1-1HGQ9H1L0 117 aa4.08□□□□□ -1.76
VPS13A-206ENST00000376646 MKNK2Q9HBH9 465 aa4.08□□□□□ -1.76
VPS13A-206ENST00000376646 NCANO14594 1321 aa4.08□□□□□ -1.76
VPS13A-206ENST00000376646 CBX7O95931 251 aa4.07□□□□□ -1.76
VPS13A-206ENST00000376646 RPS26P62854 115 aaKnown RBP4.07□□□□□ -1.76
VPS13A-206ENST00000376646 TAF1CQ15572 869 aaPredicted RBP4.07□□□□□ -1.76
VPS13A-206ENST00000376646 OGFOD2Q6N063 350 aa4.07□□□□□ -1.76
VPS13A-206ENST00000376646 LETMD1Q6P1Q0 360 aa4.07□□□□□ -1.76
VPS13A-206ENST00000376646 TMC4Q7Z404 712 aa4.07□□□□□ -1.76
VPS13A-206ENST00000376646 CDH24Q86UP0 819 aa4.07□□□□□ -1.76
VPS13A-206ENST00000376646 KCT2Q8NC54 265 aa4.07□□□□□ -1.76
VPS13A-206ENST00000376646 HSPA12BQ96MM6 686 aa4.07□□□□□ -1.76
VPS13A-206ENST00000376646 ATP13A1Q9HD20 1204 aa4.07□□□□□ -1.76
VPS13A-206ENST00000376646 TJP2Q9UDY2 1190 aa4.07□□□□□ -1.76
VPS13A-206ENST00000376646 SNCAIPQ9Y6H5 919 aa4.07□□□□□ -1.76
VPS13A-206ENST00000376646 CARMIL2Q6F5E8 1435 aa4.07□□□□□ -1.76
VPS13A-206ENST00000376646 GNAT3A8MTJ3 354 aa4.07□□□□□ -1.76
VPS13A-206ENST00000376646 PGRP06401 933 aa4.07□□□□□ -1.76
VPS13A-206ENST00000376646 SCARA3Q6AZY7 606 aa4.07□□□□□ -1.76
VPS13A-206ENST00000376646 HID1Q8IV36 788 aa4.07□□□□□ -1.76
VPS13A-206ENST00000376646 PHC3Q8NDX5 983 aa4.07□□□□□ -1.76
VPS13A-206ENST00000376646 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.07□□□□□ -1.76
VPS13A-206ENST00000376646 PITPNM2Q9BZ72 1349 aa4.07□□□□□ -1.76
VPS13A-206ENST00000376646 WASH4PA8MWX3 477 aa4.06□□□□□ -1.76
VPS13A-206ENST00000376646 H3BS24 57 aa4.06□□□□□ -1.76
VPS13A-206ENST00000376646 IGF2BP3O00425 579 aaKnown RBP eCLIP4.06□□□□□ -1.76
VPS13A-206ENST00000376646 ZP2Q05996 745 aa4.06□□□□□ -1.76
VPS13A-206ENST00000376646 ANGEL2Q5VTE6 544 aaKnown RBP4.06□□□□□ -1.76
VPS13A-206ENST00000376646 VTI1BQ9UEU0 232 aa4.06□□□□□ -1.76
VPS13A-206ENST00000376646 UPK3BL1B0FP48 263 aa4.06□□□□□ -1.76
VPS13A-206ENST00000376646 FAM155AB1AL88 458 aaPredicted RBP4.06□□□□□ -1.76
VPS13A-206ENST00000376646 UPK3BL2E5RIL1 263 aa4.06□□□□□ -1.76
VPS13A-206ENST00000376646 CST3P01034 146 aaPredicted RBP4.06□□□□□ -1.76
VPS13A-206ENST00000376646 FAM160A1Q05DH4 1040 aa4.06□□□□□ -1.76
VPS13A-206ENST00000376646 CCDC27Q2M243 656 aa4.06□□□□□ -1.76
VPS13A-206ENST00000376646 SFRP5Q5T4F7 317 aa4.06□□□□□ -1.76
VPS13A-206ENST00000376646 ACSF2Q96CM8 615 aaPredicted RBP4.06□□□□□ -1.76
VPS13A-206ENST00000376646 MAPK8IP1Q9UQF2 711 aa4.06□□□□□ -1.76
VPS13A-206ENST00000376646 USP31Q70CQ4 1352 aa4.05□□□□□ -1.76
VPS13A-206ENST00000376646 F13A1P00488 732 aa4.05□□□□□ -1.76
VPS13A-206ENST00000376646 PF4P02776 101 aa4.05□□□□□ -1.76
VPS13A-206ENST00000376646 TSNAXIP1Q2TAA8 658 aa4.05□□□□□ -1.76
VPS13A-206ENST00000376646 MFSD4AQ8N468 514 aa4.05□□□□□ -1.76
VPS13A-206ENST00000376646 ASIC4Q96FT7 647 aa4.05□□□□□ -1.76
VPS13A-206ENST00000376646 TMEM87BQ96K49 555 aa4.05□□□□□ -1.76
VPS13A-206ENST00000376646 CARS2Q9HA77 564 aaKnown RBP4.05□□□□□ -1.76
VPS13A-206ENST00000376646 SEMA3GQ9NS98 782 aa4.05□□□□□ -1.76
VPS13A-206ENST00000376646 MINDY4BA8MYZ0 360 aa4.05□□□□□ -1.76
VPS13A-206ENST00000376646 GRIN3BO60391 1043 aa4.05□□□□□ -1.76
VPS13A-206ENST00000376646 SORBS3O60504 671 aa4.05□□□□□ -1.76
VPS13A-206ENST00000376646 JUNBP17275 347 aaPredicted RBP4.05□□□□□ -1.76
VPS13A-206ENST00000376646 RPL6Q02878 288 aaKnown RBP4.05□□□□□ -1.76
VPS13A-206ENST00000376646 CAMK2GQ13555 558 aaPredicted RBP4.05□□□□□ -1.76
VPS13A-206ENST00000376646 MFSD2AQ8NA29 543 aa4.05□□□□□ -1.76
VPS13A-206ENST00000376646 FBXO27Q8NI29 283 aa4.05□□□□□ -1.76
VPS13A-206ENST00000376646 ASB11Q8WXH4 323 aa4.05□□□□□ -1.76
VPS13A-206ENST00000376646 CRELD1Q96HD1 420 aa4.05□□□□□ -1.76
VPS13A-206ENST00000376646 COPRSQ9NQ92 184 aa4.05□□□□□ -1.76
VPS13A-206ENST00000376646 SNX11Q9Y5W9 270 aa4.05□□□□□ -1.76
VPS13A-206ENST00000376646 ST14Q9Y5Y6 855 aa4.05□□□□□ -1.76
VPS13A-206ENST00000376646 CAPN6Q9Y6Q1 641 aa4.05□□□□□ -1.76
VPS13A-206ENST00000376646 GBP2P32456 591 aaPredicted RBP4.04□□□□□ -1.76
VPS13A-206ENST00000376646 CAP2P40123 477 aa4.04□□□□□ -1.76
VPS13A-206ENST00000376646 ST13P50502 369 aaKnown RBP4.04□□□□□ -1.76
VPS13A-206ENST00000376646 TNK2Q07912 1038 aa4.04□□□□□ -1.76
VPS13A-206ENST00000376646 ZNF648Q5T619 568 aaPredicted RBP4.04□□□□□ -1.76
VPS13A-206ENST00000376646 FYB2Q5VWT5 728 aa4.04□□□□□ -1.76
VPS13A-206ENST00000376646 SLC23A3Q6PIS1 610 aa4.04□□□□□ -1.76
VPS13A-206ENST00000376646 FAM168AQ92567 244 aa4.04□□□□□ -1.76
VPS13A-206ENST00000376646 NOC4LQ9BVI4 516 aaKnown RBP4.04□□□□□ -1.76
VPS13A-206ENST00000376646 MRS2Q9HD23 443 aa4.04□□□□□ -1.76
VPS13A-206ENST00000376646 FAM221AA4D161 298 aa4.04□□□□□ -1.76
VPS13A-206ENST00000376646 ZNF865P0CJ78 1059 aaPredicted RBP4.04□□□□□ -1.76
VPS13A-206ENST00000376646 PLCG1P19174 1290 aa4.04□□□□□ -1.76
VPS13A-206ENST00000376646 CLCN7P51798 805 aa4.04□□□□□ -1.76
VPS13A-206ENST00000376646 ATG4DQ86TL0 474 aaPredicted RBP4.04□□□□□ -1.76
VPS13A-206ENST00000376646 MRPL41Q8IXM3 137 aaKnown RBP4.04□□□□□ -1.76
VPS13A-206ENST00000376646 UBE2FQ969M7 185 aa4.04□□□□□ -1.76
VPS13A-206ENST00000376646 ZSWIM5Q9P217 1185 aa4.04□□□□□ -1.76
VPS13A-206ENST00000376646 DNAJA2O60884 412 aa4.03□□□□□ -1.76
VPS13A-206ENST00000376646 CILPO75339 1184 aa4.03□□□□□ -1.76
VPS13A-206ENST00000376646 MCATQ8IVS2 390 aaKnown RBP4.03□□□□□ -1.76
VPS13A-206ENST00000376646 DNAJB8Q8NHS0 232 aa4.03□□□□□ -1.76
VPS13A-206ENST00000376646 RHOVQ96L33 236 aa4.03□□□□□ -1.76
VPS13A-206ENST00000376646 Q96M66 194 aa4.03□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 144.3 ms