RNA–Protein interactions for RNA: ENST00000375850.3

C9orf47-202, Transcript of chromosome 9 open reading frame 47, humanhuman

APPRIS ALT2 TSL 3 BASIC

Gene C9orf47, Length 859 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf47-202ENST00000375850 XRN2Q9H0D6 950 aaKnown RBP eCLIP28.33■■■□□ 2.13
C9orf47-202ENST00000375850 DNAJC18Q9H819 358 aa28.33■■■□□ 2.13
C9orf47-202ENST00000375850 GJD2Q9UKL4 321 aa28.33■■■□□ 2.13
C9orf47-202ENST00000375850 PALD1Q9ULE6 856 aa28.33■■■□□ 2.13
C9orf47-202ENST00000375850 ZBTB21Q9ULJ3 1066 aa28.33■■■□□ 2.13
C9orf47-202ENST00000375850 CYP7A1P22680 504 aa28.32■■■□□ 2.12
C9orf47-202ENST00000375850 PIH1D3Q9NQM4 214 aaKnown RBP28.32■■■□□ 2.12
C9orf47-202ENST00000375850 ATAD5Q96QE3 1844 aa28.32■■■□□ 2.12
C9orf47-202ENST00000375850 EVI5O60447 810 aa28.31■■■□□ 2.12
C9orf47-202ENST00000375850 GPRC5AQ8NFJ5 357 aa28.31■■■□□ 2.12
C9orf47-202ENST00000375850 SOCS4Q8WXH5 440 aa28.31■■■□□ 2.12
C9orf47-202ENST00000375850 C1orf115Q9H7X2 142 aa28.31■■■□□ 2.12
C9orf47-202ENST00000375850 RPTORQ8N122 1335 aa28.31■■■□□ 2.12
C9orf47-202ENST00000375850 IDH1O75874 414 aaKnown RBP28.3■■■□□ 2.12
C9orf47-202ENST00000375850 HERVK_113P62684 666 aa28.3■■■□□ 2.12
C9orf47-202ENST00000375850 HNRNPUQ00839 825 aaKnown RBP eCLIP28.3■■■□□ 2.12
C9orf47-202ENST00000375850 NECAB2Q7Z6G3 386 aa28.3■■■□□ 2.12
C9orf47-202ENST00000375850 TRMT44Q8IYL2 757 aaKnown RBP28.3■■■□□ 2.12
C9orf47-202ENST00000375850 EAF2Q96CJ1 260 aaPredicted RBP28.3■■■□□ 2.12
C9orf47-202ENST00000375850 HMX1Q9NP08 348 aaPredicted RBP28.3■■■□□ 2.12
C9orf47-202ENST00000375850 RBM27Q9P2N5 1060 aaKnown RBP28.3■■■□□ 2.12
C9orf47-202ENST00000375850 A0A1W2PPC1 479 aa28.29■■■□□ 2.12
C9orf47-202ENST00000375850 XRCC5P13010 732 aaKnown RBP28.29■■■□□ 2.12
C9orf47-202ENST00000375850 MAPK4P31152 587 aa28.29■■■□□ 2.12
C9orf47-202ENST00000375850 MAP3K12Q12852 859 aa28.29■■■□□ 2.12
C9orf47-202ENST00000375850 P2RX7Q99572 595 aaKnown RBP28.29■■■□□ 2.12
C9orf47-202ENST00000375850 CCDC8Q9H0W5 538 aaPredicted RBP28.29■■■□□ 2.12
C9orf47-202ENST00000375850 EHD4Q9H223 541 aa28.29■■■□□ 2.12
C9orf47-202ENST00000375850 HSP90AB4PQ58FF6 505 aa28.28■■■□□ 2.12
C9orf47-202ENST00000375850 USP17L2Q6R6M4 530 aa28.28■■■□□ 2.12
C9orf47-202ENST00000375850 NUDT12Q9BQG2 462 aa28.28■■■□□ 2.12
C9orf47-202ENST00000375850 PRO3102Q9H379 93 aa28.28■■■□□ 2.12
C9orf47-202ENST00000375850 TLR7Q9NYK1 1049 aaKnown RBP28.28■■■□□ 2.12
C9orf47-202ENST00000375850 GDF11O95390 407 aa28.27■■■□□ 2.12
C9orf47-202ENST00000375850 USP5P45974 858 aa28.27■■■□□ 2.12
C9orf47-202ENST00000375850 DYNLL1P63167 89 aaKnown RBP28.27■■■□□ 2.12
C9orf47-202ENST00000375850 PDE3AQ14432 1141 aa28.27■■■□□ 2.12
C9orf47-202ENST00000375850 TTC6Q86TZ1 520 aa28.27■■■□□ 2.12
C9orf47-202ENST00000375850 SAP30BPQ9UHR5 308 aaKnown RBP28.27■■■□□ 2.12
C9orf47-202ENST00000375850 SIPA1L1O43166 1804 aa28.27■■■□□ 2.12
C9orf47-202ENST00000375850 JAG1P78504 1218 aa28.26■■■□□ 2.11
C9orf47-202ENST00000375850 TATDN1Q6P1N9 297 aa28.26■■■□□ 2.11
C9orf47-202ENST00000375850 CEP85Q6P2H3 762 aa28.26■■■□□ 2.11
C9orf47-202ENST00000375850 CCAR1Q8IX12 1150 aaKnown RBP28.26■■■□□ 2.11
C9orf47-202ENST00000375850 PAWRQ96IZ0 340 aaKnown RBP28.26■■■□□ 2.11
C9orf47-202ENST00000375850 SERPINB13Q9UIV8 391 aa28.26■■■□□ 2.11
C9orf47-202ENST00000375850 TRIOBPQ9H2D6 2365 aa28.25■■■□□ 2.11
C9orf47-202ENST00000375850 RLBP1P12271 317 aa28.25■■■□□ 2.11
C9orf47-202ENST00000375850 MAGEB6Q8N7X4 407 aa28.25■■■□□ 2.11
C9orf47-202ENST00000375850 C12orf42Q96LP6 360 aa28.25■■■□□ 2.11
C9orf47-202ENST00000375850 FOCADQ5VW36 1801 aa28.25■■■□□ 2.11
C9orf47-202ENST00000375850 MS4A1P11836 297 aa28.24■■■□□ 2.11
C9orf47-202ENST00000375850 USP14P54578 494 aa28.24■■■□□ 2.11
C9orf47-202ENST00000375850 TTF1Q15361 905 aaPredicted RBP28.24■■■□□ 2.11
C9orf47-202ENST00000375850 RBPJLQ9UBG7 517 aa28.24■■■□□ 2.11
C9orf47-202ENST00000375850 GH2P01242 217 aa28.23■■■□□ 2.11
C9orf47-202ENST00000375850 ERVK-9P63128 1117 aa28.23■■■□□ 2.11
C9orf47-202ENST00000375850 ERVK-24P63145 666 aa28.23■■■□□ 2.11
C9orf47-202ENST00000375850 MAP3K21Q5TCX8 1036 aa28.23■■■□□ 2.11
C9orf47-202ENST00000375850 MIGA1Q8NAN2 632 aa28.23■■■□□ 2.11
C9orf47-202ENST00000375850 NBPF3Q9H094 633 aa28.23■■■□□ 2.11
C9orf47-202ENST00000375850 TXNRD2Q9NNW7 524 aa28.23■■■□□ 2.11
C9orf47-202ENST00000375850 EMILIN3Q9NT22 766 aa28.23■■■□□ 2.11
C9orf47-202ENST00000375850 CYP2B6P20813 491 aa28.22■■■□□ 2.11
C9orf47-202ENST00000375850 AACSQ86V21 672 aa28.22■■■□□ 2.11
C9orf47-202ENST00000375850 TRIB2Q92519 343 aa28.22■■■□□ 2.11
C9orf47-202ENST00000375850 FEZ1Q99689 392 aa28.22■■■□□ 2.11
C9orf47-202ENST00000375850 DOCK3Q8IZD9 2030 aa28.21■■■□□ 2.11
C9orf47-202ENST00000375850 USP17L15C9J2P7 530 aa28.21■■■□□ 2.11
C9orf47-202ENST00000375850 USP17L13C9JLJ4 530 aa28.21■■■□□ 2.11
C9orf47-202ENST00000375850 USP17L11C9JVI0 530 aa28.21■■■□□ 2.11
C9orf47-202ENST00000375850 USP17L18D6R9N7 530 aa28.21■■■□□ 2.11
C9orf47-202ENST00000375850 USP17L22D6RA61 530 aa28.21■■■□□ 2.11
C9orf47-202ENST00000375850 USP17L17D6RBQ6 530 aa28.21■■■□□ 2.11
C9orf47-202ENST00000375850 USP17L19D6RCP7 530 aa28.21■■■□□ 2.11
C9orf47-202ENST00000375850 USP17L20D6RJB6 530 aa28.21■■■□□ 2.11
C9orf47-202ENST00000375850 CCNA1P78396 465 aa28.21■■■□□ 2.11
C9orf47-202ENST00000375850 USP17L24Q0WX57 530 aa28.21■■■□□ 2.11
C9orf47-202ENST00000375850 CABP5Q9NP86 173 aa28.21■■■□□ 2.11
C9orf47-202ENST00000375850 OGDHLQ9ULD0 1010 aa28.21■■■□□ 2.11
C9orf47-202ENST00000375850 RABGAP1Q9Y3P9 1069 aa28.21■■■□□ 2.11
C9orf47-202ENST00000375850 GLRX3O76003 335 aaKnown RBP28.2■■■□□ 2.1
C9orf47-202ENST00000375850 ZKSCAN1P17029 563 aaPredicted RBP28.2■■■□□ 2.1
C9orf47-202ENST00000375850 RGS2P41220 211 aa28.2■■■□□ 2.1
C9orf47-202ENST00000375850 SHROOM1Q2M3G4 852 aaPredicted RBP28.2■■■□□ 2.1
C9orf47-202ENST00000375850 KIAA1683Q9H0B3 1180 aa28.2■■■□□ 2.1
C9orf47-202ENST00000375850 CDK5RAP2Q96SN8 1893 aa28.19■■■□□ 2.1
C9orf47-202ENST00000375850 PRKAR2AP13861 404 aaKnown RBP28.19■■■□□ 2.1
C9orf47-202ENST00000375850 CERKLQ49MI3 558 aaPredicted RBP28.19■■■□□ 2.1
C9orf47-202ENST00000375850 GPR142Q7Z601 462 aa28.19■■■□□ 2.1
C9orf47-202ENST00000375850 PLEKHH3Q7Z736 793 aa28.19■■■□□ 2.1
C9orf47-202ENST00000375850 USP6NLQ92738 828 aa28.19■■■□□ 2.1
C9orf47-202ENST00000375850 EXOC6BQ9Y2D4 811 aa28.19■■■□□ 2.1
C9orf47-202ENST00000375850 ABCB5Q2M3G0 1257 aa28.18■■■□□ 2.1
C9orf47-202ENST00000375850 PPIL4Q8WUA2 492 aaKnown RBP eCLIP28.18■■■□□ 2.1
C9orf47-202ENST00000375850 RIOK1Q9BRS2 568 aaKnown RBP28.18■■■□□ 2.1
C9orf47-202ENST00000375850 PAGR1Q9BTK6 254 aa28.18■■■□□ 2.1
C9orf47-202ENST00000375850 ANTXR1Q9H6X2 564 aa28.18■■■□□ 2.1
C9orf47-202ENST00000375850 CWC22Q9HCG8 908 aaKnown RBP28.18■■■□□ 2.1
C9orf47-202ENST00000375850 TRIM32Q13049 653 aa28.17■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms