RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 RABL2BQ9UNT1 228 aa9.61□□□□□ -0.87
SYNE1-206ENST00000367253 IQSEC3Q9UPP2 1182 aaPredicted RBP9.61□□□□□ -0.87
SYNE1-206ENST00000367253 MYO3BQ8WXR4 1341 aa9.61□□□□□ -0.87
SYNE1-206ENST00000367253 ZBTB22O15209 634 aa9.61□□□□□ -0.87
SYNE1-206ENST00000367253 CAND2O75155 1236 aa9.61□□□□□ -0.87
SYNE1-206ENST00000367253 ABCD1P33897 745 aa9.61□□□□□ -0.87
SYNE1-206ENST00000367253 TBC1D10BQ4KMP7 808 aaPredicted RBP9.61□□□□□ -0.87
SYNE1-206ENST00000367253 MYSM1Q5VVJ2 828 aa9.61□□□□□ -0.87
SYNE1-206ENST00000367253 IPO5O00410 1097 aaKnown RBP9.61□□□□□ -0.87
SYNE1-206ENST00000367253 TNPO2O14787 897 aaKnown RBP9.61□□□□□ -0.87
SYNE1-206ENST00000367253 P4HA1P13674 534 aa9.61□□□□□ -0.87
SYNE1-206ENST00000367253 VEGFAP15692 232 aaPredicted RBP9.61□□□□□ -0.87
SYNE1-206ENST00000367253 CKAP4Q07065 602 aaKnown RBP9.61□□□□□ -0.87
SYNE1-206ENST00000367253 MCTP2Q6DN12 878 aa9.61□□□□□ -0.87
SYNE1-206ENST00000367253 LMNTD2Q8IXW0 634 aa9.61□□□□□ -0.87
SYNE1-206ENST00000367253 INO80Q9ULG1 1556 aaPredicted RBP9.61□□□□□ -0.87
SYNE1-206ENST00000367253 ABCC3O15438 1527 aa9.61□□□□□ -0.87
SYNE1-206ENST00000367253 MAGEB6P1A0A0J9YX57 407 aa9.61□□□□□ -0.87
SYNE1-206ENST00000367253 TACC1O75410 805 aa9.61□□□□□ -0.87
SYNE1-206ENST00000367253 BBOX1O75936 387 aa9.61□□□□□ -0.87
SYNE1-206ENST00000367253 BMP15O95972 392 aa9.61□□□□□ -0.87
SYNE1-206ENST00000367253 OATP04181 439 aa9.61□□□□□ -0.87
SYNE1-206ENST00000367253 IL15P40933 162 aaPredicted RBP9.61□□□□□ -0.87
SYNE1-206ENST00000367253 CACNA2D4Q7Z3S7 1137 aa9.61□□□□□ -0.87
SYNE1-206ENST00000367253 ZNF280CQ8ND82 737 aa9.61□□□□□ -0.87
SYNE1-206ENST00000367253 EPSTI1Q96J88 318 aa9.61□□□□□ -0.87
SYNE1-206ENST00000367253 SCAND2PQ9GZW5 306 aaPredicted RBP9.61□□□□□ -0.87
SYNE1-206ENST00000367253 CTAGE5O15320 804 aa9.6□□□□□ -0.87
SYNE1-206ENST00000367253 DMPKQ09013 629 aa9.6□□□□□ -0.87
SYNE1-206ENST00000367253 TTC14Q96N46 770 aa9.6□□□□□ -0.87
SYNE1-206ENST00000367253 SLITRK6Q9H5Y7 841 aa9.6□□□□□ -0.87
SYNE1-206ENST00000367253 PALMDQ9NP74 551 aa9.6□□□□□ -0.87
SYNE1-206ENST00000367253 GNA11P29992 359 aa9.6□□□□□ -0.87
SYNE1-206ENST00000367253 PCK1P35558 622 aa9.6□□□□□ -0.87
SYNE1-206ENST00000367253 GFM2Q969S9 779 aaKnown RBP9.6□□□□□ -0.87
SYNE1-206ENST00000367253 MCM9Q9NXL9 1143 aa9.6□□□□□ -0.87
SYNE1-206ENST00000367253 NSD2O96028 1365 aa9.6□□□□□ -0.87
SYNE1-206ENST00000367253 SP4Q02446 784 aa9.6□□□□□ -0.87
SYNE1-206ENST00000367253 SSRP1Q08945 709 aaKnown RBP9.6□□□□□ -0.87
SYNE1-206ENST00000367253 CAMK4Q16566 473 aa9.6□□□□□ -0.87
SYNE1-206ENST00000367253 UVSSAQ2YD98 709 aa9.6□□□□□ -0.87
SYNE1-206ENST00000367253 HS2ST1Q7LGA3 356 aa9.6□□□□□ -0.87
SYNE1-206ENST00000367253 UBE3BQ7Z3V4 1068 aa9.6□□□□□ -0.87
SYNE1-206ENST00000367253 RPAP2Q8IXW5 612 aaPredicted RBP9.6□□□□□ -0.87
SYNE1-206ENST00000367253 GTF3C2Q8WUA4 911 aaPredicted RBP9.6□□□□□ -0.87
SYNE1-206ENST00000367253 ZNF215Q9UL58 517 aaPredicted RBP9.6□□□□□ -0.87
SYNE1-206ENST00000367253 EXOC7Q9UPT5 735 aa9.6□□□□□ -0.87
SYNE1-206ENST00000367253 CFAP65Q6ZU64 1925 aaKnown RBP9.6□□□□□ -0.87
SYNE1-206ENST00000367253 SBNO2Q9Y2G9 1366 aa9.6□□□□□ -0.87
SYNE1-206ENST00000367253 PRDM15P57071 1507 aaPredicted RBP9.6□□□□□ -0.87
SYNE1-206ENST00000367253 TMPOP42166 694 aaKnown RBP9.6□□□□□ -0.87
SYNE1-206ENST00000367253 GNG11P61952 73 aa9.6□□□□□ -0.87
SYNE1-206ENST00000367253 LACTBP83111 547 aaPredicted RBP9.6□□□□□ -0.87
SYNE1-206ENST00000367253 MUM1L1Q5H9M0 696 aa9.6□□□□□ -0.87
SYNE1-206ENST00000367253 TTC19Q6DKK2 380 aaPredicted RBP9.6□□□□□ -0.87
SYNE1-206ENST00000367253 UBE2Q1Q7Z7E8 422 aa9.6□□□□□ -0.87
SYNE1-206ENST00000367253 CTAGE6Q86UF2 777 aa9.6□□□□□ -0.87
SYNE1-206ENST00000367253 METTL23Q86XA0 190 aa9.6□□□□□ -0.87
SYNE1-206ENST00000367253 PPP1R14CQ8TAE6 165 aa9.6□□□□□ -0.87
SYNE1-206ENST00000367253 DPP7Q9UHL4 492 aa9.6□□□□□ -0.87
SYNE1-206ENST00000367253 TMEM94Q12767 1356 aa9.6□□□□□ -0.87
SYNE1-206ENST00000367253 LMTK2Q8IWU2 1503 aa9.59□□□□□ -0.87
SYNE1-206ENST00000367253 NPR1P16066 1061 aa9.59□□□□□ -0.87
SYNE1-206ENST00000367253 PPP2R5DQ14738 602 aa9.59□□□□□ -0.87
SYNE1-206ENST00000367253 TAF1CQ15572 869 aaPredicted RBP9.59□□□□□ -0.87
SYNE1-206ENST00000367253 ARFGAP2Q8N6H7 521 aa9.59□□□□□ -0.87
SYNE1-206ENST00000367253 EHBP1Q8NDI1 1231 aa9.59□□□□□ -0.87
SYNE1-206ENST00000367253 MYOM2P54296 1465 aa9.59□□□□□ -0.87
SYNE1-206ENST00000367253 MACROD2A1Z1Q3 448 aa9.59□□□□□ -0.87
SYNE1-206ENST00000367253 GOLGA6CA6NDK9 693 aa9.59□□□□□ -0.87
SYNE1-206ENST00000367253 SMIM24O75264 130 aa9.59□□□□□ -0.87
SYNE1-206ENST00000367253 PPFIA2O75334 1257 aa9.59□□□□□ -0.87
SYNE1-206ENST00000367253 GOLGA6DP0CG33 693 aa9.59□□□□□ -0.87
SYNE1-206ENST00000367253 POLR2BP30876 1174 aaKnown RBP9.59□□□□□ -0.87
SYNE1-206ENST00000367253 DNA2P51530 1060 aa9.59□□□□□ -0.87
SYNE1-206ENST00000367253 FAM160B1Q5W0V3 765 aa9.59□□□□□ -0.87
SYNE1-206ENST00000367253 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP9.59□□□□□ -0.871e-6■■■■■ 56.2
SYNE1-206ENST00000367253 ADCY5O95622 1261 aa9.59□□□□□ -0.87
SYNE1-206ENST00000367253 MAP4K4O95819 1239 aaPredicted RBP9.59□□□□□ -0.87
SYNE1-206ENST00000367253 UBA7P41226 1012 aa9.59□□□□□ -0.87
SYNE1-206ENST00000367253 NME9Q86XW9 330 aa9.59□□□□□ -0.87
SYNE1-206ENST00000367253 PFDN4Q9NQP4 134 aa9.59□□□□□ -0.87
SYNE1-206ENST00000367253 ANGEL1Q9UNK9 670 aaKnown RBP9.59□□□□□ -0.87
SYNE1-206ENST00000367253 TRPC6Q9Y210 931 aa9.59□□□□□ -0.87
SYNE1-206ENST00000367253 KDM5CP41229 1560 aa9.59□□□□□ -0.87
SYNE1-206ENST00000367253 ESYT2A0FGR8 921 aa9.59□□□□□ -0.87
SYNE1-206ENST00000367253 GOLGA8AA7E2F4 631 aa9.59□□□□□ -0.87
SYNE1-206ENST00000367253 GOLGA8BA8MQT2 603 aa9.59□□□□□ -0.87
SYNE1-206ENST00000367253 HSPA1LP34931 641 aa9.59□□□□□ -0.87
SYNE1-206ENST00000367253 ZBTB8OSQ8IWT0 167 aa9.59□□□□□ -0.87
SYNE1-206ENST00000367253 TNS4Q8IZW8 715 aa9.59□□□□□ -0.87
SYNE1-206ENST00000367253 RRAGDQ9NQL2 400 aaPredicted RBP9.59□□□□□ -0.87
SYNE1-206ENST00000367253 AAASQ9NRG9 546 aa9.59□□□□□ -0.87
SYNE1-206ENST00000367253 NUB1Q9Y5A7 615 aa9.59□□□□□ -0.87
SYNE1-206ENST00000367253 IDEP14735 1019 aa9.58□□□□□ -0.88
SYNE1-206ENST00000367253 GPATCH4Q5T3I0 446 aaKnown RBP9.58□□□□□ -0.88
SYNE1-206ENST00000367253 KRT26Q7Z3Y9 468 aa9.58□□□□□ -0.88
SYNE1-206ENST00000367253 GEMIN8Q9NWZ8 242 aaKnown RBP9.58□□□□□ -0.88
SYNE1-206ENST00000367253 A0A1W2PRG0 241 aa9.58□□□□□ -0.88
SYNE1-206ENST00000367253 CREB3O43889 395 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms