RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 RNF181Q9P0P0 153 aa21.83■■□□□ 1.08
CLN3-206ENST00000360019 ATRNL1Q5VV63 1379 aa21.83■■□□□ 1.08
CLN3-206ENST00000360019 COL2A1P02458 1487 aaPredicted RBP21.83■■□□□ 1.08
CLN3-206ENST00000360019 CCDC69A6NI79 296 aa21.82■■□□□ 1.08
CLN3-206ENST00000360019 CTDNEP1O95476 244 aa21.82■■□□□ 1.08
CLN3-206ENST00000360019 SLURP2P0DP57 97 aa21.82■■□□□ 1.08
CLN3-206ENST00000360019 RXRAP19793 462 aa21.82■■□□□ 1.08
CLN3-206ENST00000360019 GJB2P29033 226 aa21.82■■□□□ 1.08
CLN3-206ENST00000360019 GPC2Q8N158 579 aa21.82■■□□□ 1.08
CLN3-206ENST00000360019 IL17RBQ9NRM6 502 aa21.82■■□□□ 1.08
CLN3-206ENST00000360019 SLC12A7Q9Y666 1083 aa21.82■■□□□ 1.08
CLN3-206ENST00000360019 CNTNAP1P78357 1384 aa21.81■■□□□ 1.08
CLN3-206ENST00000360019 JAK2O60674 1132 aa21.81■■□□□ 1.08
CLN3-206ENST00000360019 TSPY3P0CV98 308 aa21.81■■□□□ 1.08
CLN3-206ENST00000360019 TSPY8P0CW00 308 aa21.81■■□□□ 1.08
CLN3-206ENST00000360019 MICU3Q86XE3 530 aa21.81■■□□□ 1.08
CLN3-206ENST00000360019 ZSCAN29Q8IWY8 852 aaPredicted RBP21.81■■□□□ 1.08
CLN3-206ENST00000360019 TMTC2Q8N394 836 aa21.81■■□□□ 1.08
CLN3-206ENST00000360019 MYL10Q9BUA6 226 aa21.81■■□□□ 1.08
CLN3-206ENST00000360019 DNAJC18Q9H819 358 aa21.81■■□□□ 1.08
CLN3-206ENST00000360019 SOCS7O14512 581 aa21.8■■□□□ 1.08
CLN3-206ENST00000360019 ZBTB43O43298 467 aa21.8■■□□□ 1.08
CLN3-206ENST00000360019 MYO1BO43795 1136 aa21.8■■□□□ 1.08
CLN3-206ENST00000360019 SHMT1P34896 483 aa21.8■■□□□ 1.08
CLN3-206ENST00000360019 IFIT1BQ5T764 474 aaKnown RBP21.8■■□□□ 1.08
CLN3-206ENST00000360019 RBM26Q5T8P6 1007 aaKnown RBP21.8■■□□□ 1.08
CLN3-206ENST00000360019 FKBP1CQ5VVH2 108 aa21.8■■□□□ 1.08
CLN3-206ENST00000360019 RCSD1Q6JBY9 416 aa21.8■■□□□ 1.08
CLN3-206ENST00000360019 SAMD7Q7Z3H4 446 aa21.8■■□□□ 1.08
CLN3-206ENST00000360019 VEZTQ9HBM0 779 aa21.8■■□□□ 1.08
CLN3-206ENST00000360019 PI4KBQ9UBF8 816 aa21.8■■□□□ 1.08
CLN3-206ENST00000360019 SWAP70Q9UH65 585 aa21.8■■□□□ 1.08
CLN3-206ENST00000360019 METAP2P50579 478 aaKnown RBP eCLIP21.8■■□□□ 1.08
CLN3-206ENST00000360019 RAB3GAP1Q15042 981 aa21.8■■□□□ 1.08
CLN3-206ENST00000360019 C9orf131Q5VYM1 1079 aa21.8■■□□□ 1.08
CLN3-206ENST00000360019 NSUN7Q8NE18 718 aaKnown RBP21.8■■□□□ 1.08
CLN3-206ENST00000360019 SMARCC2Q8TAQ2 1214 aa21.8■■□□□ 1.08
CLN3-206ENST00000360019 LLPHQ9BRT6 129 aaKnown RBP21.8■■□□□ 1.08
CLN3-206ENST00000360019 TCP11L1Q9NUJ3 509 aa21.8■■□□□ 1.08
CLN3-206ENST00000360019 TBC1D10BQ4KMP7 808 aaPredicted RBP21.79■■□□□ 1.08
CLN3-206ENST00000360019 NEDD1Q8NHV4 660 aa21.79■■□□□ 1.08
CLN3-206ENST00000360019 FAM151AQ8WW52 585 aa21.79■■□□□ 1.08
CLN3-206ENST00000360019 NID2Q14112 1375 aa21.79■■□□□ 1.08
CLN3-206ENST00000360019 GPR162Q16538 588 aa21.78■■□□□ 1.08
CLN3-206ENST00000360019 METTL16Q86W50 562 aaKnown RBP21.78■■□□□ 1.08
CLN3-206ENST00000360019 CCDC144CPQ8IYA2 1237 aa21.78■■□□□ 1.08
CLN3-206ENST00000360019 ZNF654Q8IZM8 581 aa21.78■■□□□ 1.08
CLN3-206ENST00000360019 GPRC5DQ9NZD1 345 aa21.78■■□□□ 1.08
CLN3-206ENST00000360019 FAM196BA6NMK8 535 aa21.78■■□□□ 1.08
CLN3-206ENST00000360019 CDC27P30260 824 aa21.78■■□□□ 1.08
CLN3-206ENST00000360019 NUCB2P80303 420 aa21.78■■□□□ 1.08
CLN3-206ENST00000360019 GNL3Q9BVP2 549 aaKnown RBP eCLIP21.78■■□□□ 1.08
CLN3-206ENST00000360019 ZDHHC9Q9Y397 364 aa21.78■■□□□ 1.08
CLN3-206ENST00000360019 PLIN4Q96Q06 1357 aa21.77■■□□□ 1.08
CLN3-206ENST00000360019 PTPDC1A2A3K4 754 aa21.77■■□□□ 1.08
CLN3-206ENST00000360019 GOLGA8AA7E2F4 631 aa21.77■■□□□ 1.08
CLN3-206ENST00000360019 AKR1B1P15121 316 aa21.77■■□□□ 1.08
CLN3-206ENST00000360019 ADD1P35611 737 aaKnown RBP21.77■■□□□ 1.08
CLN3-206ENST00000360019 KIF4BQ2VIQ3 1234 aa21.77■■□□□ 1.08
CLN3-206ENST00000360019 SYNE3Q6ZMZ3 975 aa21.77■■□□□ 1.08
CLN3-206ENST00000360019 FAM83AQ86UY5 434 aa21.77■■□□□ 1.08
CLN3-206ENST00000360019 DGKHQ86XP1 1220 aa21.77■■□□□ 1.08
CLN3-206ENST00000360019 CRACR2BQ8N4Y2 399 aaPredicted RBP21.77■■□□□ 1.08
CLN3-206ENST00000360019 CSRNP1Q96S65 589 aa21.77■■□□□ 1.08
CLN3-206ENST00000360019 FAM217BQ9NTX9 383 aaPredicted RBP21.77■■□□□ 1.08
CLN3-206ENST00000360019 MYH8P13535 1937 aa21.77■■□□□ 1.08
CLN3-206ENST00000360019 H7C1D1 291 aa21.76■■□□□ 1.07
CLN3-206ENST00000360019 DDNO94850 711 aaPredicted RBP21.76■■□□□ 1.07
CLN3-206ENST00000360019 RCAN1P53805 252 aa21.76■■□□□ 1.07
CLN3-206ENST00000360019 FOXP4Q8IVH2 680 aaPredicted RBP21.76■■□□□ 1.07
CLN3-206ENST00000360019 ANKS1AQ92625 1134 aa21.76■■□□□ 1.07
CLN3-206ENST00000360019 CHMP4CQ96CF2 233 aa21.76■■□□□ 1.07
CLN3-206ENST00000360019 ASTN2O75129 1339 aaPredicted RBP21.76■■□□□ 1.07
CLN3-206ENST00000360019 DHX16O60231 1041 aaKnown RBP21.76■■□□□ 1.07
CLN3-206ENST00000360019 PPFIA3O75145 1194 aa21.76■■□□□ 1.07
CLN3-206ENST00000360019 SYT1P21579 422 aa21.76■■□□□ 1.07
CLN3-206ENST00000360019 CCDC178Q5BJE1 867 aa21.76■■□□□ 1.07
CLN3-206ENST00000360019 CDAN1Q8IWY9 1227 aa21.76■■□□□ 1.07
CLN3-206ENST00000360019 DDX11Q96FC9 970 aa21.76■■□□□ 1.07
CLN3-206ENST00000360019 TMEM39BQ9GZU3 492 aa21.76■■□□□ 1.07
CLN3-206ENST00000360019 BRD1O95696 1058 aa21.75■■□□□ 1.07
CLN3-206ENST00000360019 TROAPQ12815 778 aa21.75■■□□□ 1.07
CLN3-206ENST00000360019 CATIPQ7Z7H3 387 aa21.75■■□□□ 1.07
CLN3-206ENST00000360019 TRPM4Q8TD43 1214 aa21.75■■□□□ 1.07
CLN3-206ENST00000360019 NUP133Q8WUM0 1156 aa21.75■■□□□ 1.07
CLN3-206ENST00000360019 PGAP2Q9UHJ9 254 aa21.75■■□□□ 1.07
CLN3-206ENST00000360019 TAOK2Q9UL54 1235 aa21.75■■□□□ 1.07
CLN3-206ENST00000360019 EPS15P42566 896 aa21.74■■□□□ 1.07
CLN3-206ENST00000360019 NOVP48745 357 aa21.74■■□□□ 1.07
CLN3-206ENST00000360019 TATDN1Q6P1N9 297 aa21.74■■□□□ 1.07
CLN3-206ENST00000360019 TNPO1Q92973 898 aaKnown RBP21.74■■□□□ 1.07
CLN3-206ENST00000360019 CEP95Q96GE4 821 aa21.74■■□□□ 1.07
CLN3-206ENST00000360019 STX8Q9UNK0 236 aa21.74■■□□□ 1.07
CLN3-206ENST00000360019 SCAF8Q9UPN6 1271 aaKnown RBP21.74■■□□□ 1.07
CLN3-206ENST00000360019 CPLX1O14810 134 aa21.73■■□□□ 1.07
CLN3-206ENST00000360019 DDAH1O94760 285 aa21.73■■□□□ 1.07
CLN3-206ENST00000360019 HMGN5P82970 282 aaKnown RBP21.73■■□□□ 1.07
CLN3-206ENST00000360019 NTRK3Q16288 839 aa21.73■■□□□ 1.07
CLN3-206ENST00000360019 RTN1Q16799 776 aa21.73■■□□□ 1.07
CLN3-206ENST00000360019 FANCBQ8NB91 859 aa21.73■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms