RNA–Protein interactions for RNA: ENST00000357250.10

COL9A1-202, Transcript of collagen type IX alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A1, Length 4,761 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-202ENST00000357250 RAPGEF1Q13905 1077 aa13.11□□□□□ -0.31
COL9A1-202ENST00000357250 SETDB1Q15047 1291 aa13.11□□□□□ -0.31
COL9A1-202ENST00000357250 SPATA5Q8NB90 893 aa13.11□□□□□ -0.31
COL9A1-202ENST00000357250 RHOXF2Q9BQY4 288 aa13.11□□□□□ -0.31
COL9A1-202ENST00000357250 TNFAIP3P21580 790 aa13.11□□□□□ -0.31
COL9A1-202ENST00000357250 AKNAD1Q5T1N1 836 aa13.11□□□□□ -0.31
COL9A1-202ENST00000357250 PALD1Q9ULE6 856 aa13.11□□□□□ -0.31
COL9A1-202ENST00000357250 NFE2L3Q9Y4A8 694 aa13.11□□□□□ -0.31
COL9A1-202ENST00000357250 ZNF853P0CG23 659 aa13.11□□□□□ -0.31
COL9A1-202ENST00000357250 C8orf74Q6P047 294 aa13.11□□□□□ -0.31
COL9A1-202ENST00000357250 IFT20Q8IY31 132 aa13.11□□□□□ -0.31
COL9A1-202ENST00000357250 PPP1R9BQ96SB3 815 aa13.11□□□□□ -0.31
COL9A1-202ENST00000357250 SEC62Q99442 399 aaKnown RBP13.11□□□□□ -0.31
COL9A1-202ENST00000357250 ARPP21Q9UBL0 812 aaPredicted RBP13.11□□□□□ -0.31
COL9A1-202ENST00000357250 LRWD1Q9UFC0 647 aa13.11□□□□□ -0.31
COL9A1-202ENST00000357250 ATP7BP35670 1465 aa13.11□□□□□ -0.31
COL9A1-202ENST00000357250 GNA14O95837 355 aa13.11□□□□□ -0.31
COL9A1-202ENST00000357250 ADCY7P51828 1080 aa13.11□□□□□ -0.31
COL9A1-202ENST00000357250 TCIRG1Q13488 830 aa13.11□□□□□ -0.31
COL9A1-202ENST00000357250 UBL4BQ8N7F7 174 aa13.11□□□□□ -0.31
COL9A1-202ENST00000357250 NT5C3AQ9H0P0 336 aa13.11□□□□□ -0.31
COL9A1-202ENST00000357250 VEZTQ9HBM0 779 aa13.11□□□□□ -0.31
COL9A1-202ENST00000357250 TXNDC16Q9P2K2 825 aa13.11□□□□□ -0.31
COL9A1-202ENST00000357250 SHROOM2Q13796 1616 aa13.1□□□□□ -0.31
COL9A1-202ENST00000357250 E7EWF7 191 aa13.1□□□□□ -0.31
COL9A1-202ENST00000357250 GABPB1Q06547 395 aaPredicted RBP13.1□□□□□ -0.31
COL9A1-202ENST00000357250 ASIC2Q16515 512 aa13.1□□□□□ -0.31
COL9A1-202ENST00000357250 DCAF17Q5H9S7 520 aaPredicted RBP13.1□□□□□ -0.31
COL9A1-202ENST00000357250 RUFY4Q6ZNE9 571 aa13.1□□□□□ -0.31
COL9A1-202ENST00000357250 IFT81Q8WYA0 676 aa13.1□□□□□ -0.31
COL9A1-202ENST00000357250 SECISBP2LQ93073 1101 aaKnown RBP13.1□□□□□ -0.31
COL9A1-202ENST00000357250 FNBP1Q96RU3 617 aa13.1□□□□□ -0.31
COL9A1-202ENST00000357250 NCOA5Q9HCD5 579 aaKnown RBP13.1□□□□□ -0.31
COL9A1-202ENST00000357250 NKIRAS1Q9NYS0 192 aa13.1□□□□□ -0.31
COL9A1-202ENST00000357250 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.1□□□□□ -0.31
COL9A1-202ENST00000357250 SWAP70Q9UH65 585 aa13.1□□□□□ -0.31
COL9A1-202ENST00000357250 NPHP4O75161 1426 aaPredicted RBP13.1□□□□□ -0.31
COL9A1-202ENST00000357250 STX10O60499 249 aa13.1□□□□□ -0.31
COL9A1-202ENST00000357250 UFL1O94874 794 aa13.1□□□□□ -0.31
COL9A1-202ENST00000357250 MYSM1Q5VVJ2 828 aa13.1□□□□□ -0.31
COL9A1-202ENST00000357250 SYCE1Q8N0S2 351 aa13.1□□□□□ -0.31
COL9A1-202ENST00000357250 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.1□□□□□ -0.31
COL9A1-202ENST00000357250 VPS16Q9H269 839 aa13.1□□□□□ -0.31
COL9A1-202ENST00000357250 CLASP1Q7Z460 1538 aa13.1□□□□□ -0.31
COL9A1-202ENST00000357250 RIMBP2O15034 1052 aa13.1□□□□□ -0.31
COL9A1-202ENST00000357250 LIN9Q5TKA1 542 aa13.1□□□□□ -0.31
COL9A1-202ENST00000357250 GALNT17Q6IS24 598 aa13.1□□□□□ -0.31
COL9A1-202ENST00000357250 SELENOSQ9BQE4 189 aa13.1□□□□□ -0.31
COL9A1-202ENST00000357250 TFCP2L1Q9NZI6 479 aa13.1□□□□□ -0.31
COL9A1-202ENST00000357250 BACH1O14867 736 aa13.09□□□□□ -0.31
COL9A1-202ENST00000357250 TICAM2Q86XR7 235 aa13.09□□□□□ -0.31
COL9A1-202ENST00000357250 DHX37Q8IY37 1157 aaKnown RBP13.09□□□□□ -0.31
COL9A1-202ENST00000357250 SMAP1Q8IYB5 467 aaPredicted RBP13.09□□□□□ -0.31
COL9A1-202ENST00000357250 RGS22Q8NE09 1264 aa13.09□□□□□ -0.31
COL9A1-202ENST00000357250 TRERF1Q96PN7 1200 aa13.09□□□□□ -0.31
COL9A1-202ENST00000357250 ZSWIM6Q9HCJ5 1215 aa13.09□□□□□ -0.31
COL9A1-202ENST00000357250 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.09□□□□□ -0.31
COL9A1-202ENST00000357250 STAP2Q9UGK3 403 aa13.09□□□□□ -0.31
COL9A1-202ENST00000357250 ERBB3P21860 1342 aa13.09□□□□□ -0.31
COL9A1-202ENST00000357250 ARID4AP29374 1257 aaPredicted RBP13.09□□□□□ -0.31
COL9A1-202ENST00000357250 KRT9P35527 623 aa13.09□□□□□ -0.31
COL9A1-202ENST00000357250 MXRA7P84157 204 aa13.09□□□□□ -0.31
COL9A1-202ENST00000357250 UNC13BO14795 1591 aa13.09□□□□□ -0.31
COL9A1-202ENST00000357250 PFKFB2O60825 505 aa13.09□□□□□ -0.31
COL9A1-202ENST00000357250 FLOT1O75955 427 aa13.09□□□□□ -0.31
COL9A1-202ENST00000357250 IFT74Q96LB3 600 aa13.09□□□□□ -0.31
COL9A1-202ENST00000357250 PAIP2Q9BPZ3 127 aaKnown RBP13.09□□□□□ -0.31
COL9A1-202ENST00000357250 GPR108Q9NPR9 543 aa13.09□□□□□ -0.31
COL9A1-202ENST00000357250 ZHX1Q9UKY1 873 aaPredicted RBP13.09□□□□□ -0.31
COL9A1-202ENST00000357250 LRRC24Q50LG9 513 aa13.09□□□□□ -0.31
COL9A1-202ENST00000357250 SUPT20HQ8NEM7 779 aa13.09□□□□□ -0.31
COL9A1-202ENST00000357250 CCDC110Q8TBZ0 833 aa13.09□□□□□ -0.31
COL9A1-202ENST00000357250 OSBPL3Q9H4L5 887 aa13.09□□□□□ -0.31
COL9A1-202ENST00000357250 CCNL1Q9UK58 526 aaPredicted RBP13.09□□□□□ -0.31
COL9A1-202ENST00000357250 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.09□□□□□ -0.31
COL9A1-202ENST00000357250 ZNF532Q9HCE3 1301 aa13.09□□□□□ -0.31
COL9A1-202ENST00000357250 RGS12O14924 1447 aa13.09□□□□□ -0.31
COL9A1-202ENST00000357250 ARHGAP31Q2M1Z3 1444 aa13.09□□□□□ -0.31
COL9A1-202ENST00000357250 CCNT1O60563 726 aaKnown RBP13.08□□□□□ -0.31
COL9A1-202ENST00000357250 PRDM1O75626 825 aa13.08□□□□□ -0.31
COL9A1-202ENST00000357250 POLD1P28340 1107 aa13.08□□□□□ -0.31
COL9A1-202ENST00000357250 AFAP1L1Q8TED9 768 aa13.08□□□□□ -0.31
COL9A1-202ENST00000357250 DNM3Q9UQ16 869 aa13.08□□□□□ -0.31
COL9A1-202ENST00000357250 E9PCH4 1651 aa13.08□□□□□ -0.32
COL9A1-202ENST00000357250 ARHGEF35A5YM69 484 aa13.08□□□□□ -0.32
COL9A1-202ENST00000357250 SPOPO43791 374 aa13.08□□□□□ -0.32
COL9A1-202ENST00000357250 MAP3K9P80192 1104 aa13.08□□□□□ -0.32
COL9A1-202ENST00000357250 PPP2R5EQ16537 467 aa13.08□□□□□ -0.32
COL9A1-202ENST00000357250 INF2Q27J81 1249 aa13.08□□□□□ -0.32
COL9A1-202ENST00000357250 CDC37L1Q7L3B6 337 aa13.08□□□□□ -0.32
COL9A1-202ENST00000357250 MAIP1Q8WWC4 291 aa13.08□□□□□ -0.32
COL9A1-202ENST00000357250 IWS1Q96ST2 819 aa13.08□□□□□ -0.32
COL9A1-202ENST00000357250 TLR7Q9NYK1 1049 aaKnown RBP13.08□□□□□ -0.32
COL9A1-202ENST00000357250 KDM3AQ9Y4C1 1321 aa13.08□□□□□ -0.32
COL9A1-202ENST00000357250 TMEM110-MUSTN1A8MSY1 372 aa13.08□□□□□ -0.32
COL9A1-202ENST00000357250 MAGEA1P43355 309 aa13.08□□□□□ -0.32
COL9A1-202ENST00000357250 OTUD7BQ6GQQ9 843 aa13.08□□□□□ -0.32
COL9A1-202ENST00000357250 SNX29Q8TEQ0 813 aa13.08□□□□□ -0.32
COL9A1-202ENST00000357250 STIM2Q9P246 746 aa13.08□□□□□ -0.32
COL9A1-202ENST00000357250 ERCC5P28715 1186 aaPredicted RBP13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms