RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 ARPP21Q9UBL0 812 aaPredicted RBP4.78□□□□□ -1.64
LIG4-201ENST00000356922 RANBP6O60518 1105 aaKnown RBP4.78□□□□□ -1.64
LIG4-201ENST00000356922 PPFIA3O75145 1194 aa4.78□□□□□ -1.64
LIG4-201ENST00000356922 REC8O95072 547 aa4.78□□□□□ -1.64
LIG4-201ENST00000356922 EXOSC10Q01780 885 aaKnown RBP4.78□□□□□ -1.64
LIG4-201ENST00000356922 MKRN3Q13064 507 aaKnown RBP4.78□□□□□ -1.64
LIG4-201ENST00000356922 SEPT2Q15019 361 aa4.78□□□□□ -1.64
LIG4-201ENST00000356922 TSGA10IPQ3SY00 556 aa4.78□□□□□ -1.64
LIG4-201ENST00000356922 CASC1Q6TDU7 716 aa4.78□□□□□ -1.64
LIG4-201ENST00000356922 RAB11FIP4Q86YS3 637 aa4.78□□□□□ -1.64
LIG4-201ENST00000356922 MB21D2Q8IYB1 491 aaPredicted RBP4.78□□□□□ -1.64
LIG4-201ENST00000356922 STAG1Q8WVM7 1258 aa4.78□□□□□ -1.64
LIG4-201ENST00000356922 WRNIP1Q96S55 665 aa4.78□□□□□ -1.64
LIG4-201ENST00000356922 NACAP1Q9BZK3 213 aa4.78□□□□□ -1.64
LIG4-201ENST00000356922 DHX36Q9H2U1 1008 aaKnown RBP4.78□□□□□ -1.64
LIG4-201ENST00000356922 ZNF112Q9UJU3 913 aa4.78□□□□□ -1.64
LIG4-201ENST00000356922 ANGEL1Q9UNK9 670 aaKnown RBP4.78□□□□□ -1.64
LIG4-201ENST00000356922 U3KPZ7 1027 aaPredicted RBP4.78□□□□□ -1.64
LIG4-201ENST00000356922 CAP2P40123 477 aa4.78□□□□□ -1.64
LIG4-201ENST00000356922 RBM25P49756 843 aaKnown RBP4.78□□□□□ -1.64
LIG4-201ENST00000356922 VGLL4Q14135 290 aa4.78□□□□□ -1.64
LIG4-201ENST00000356922 IMMTQ16891 758 aaKnown RBP4.78□□□□□ -1.64
LIG4-201ENST00000356922 TTC6Q86TZ1 520 aa4.78□□□□□ -1.64
LIG4-201ENST00000356922 FOXP4Q8IVH2 680 aaPredicted RBP4.78□□□□□ -1.64
LIG4-201ENST00000356922 IGDCC4Q8TDY8 1250 aa4.78□□□□□ -1.64
LIG4-201ENST00000356922 JAKMIP1Q96N16 626 aaKnown RBP4.78□□□□□ -1.64
LIG4-201ENST00000356922 SNCAIPQ9Y6H5 919 aa4.78□□□□□ -1.64
LIG4-201ENST00000356922 LAMA4Q16363 1823 aa4.78□□□□□ -1.64
LIG4-201ENST00000356922 ROBO3Q96MS0 1386 aa4.78□□□□□ -1.64
LIG4-201ENST00000356922 ZMYM6O95789 1325 aa4.78□□□□□ -1.65
LIG4-201ENST00000356922 TBC1D12O60347 775 aa4.77□□□□□ -1.65
LIG4-201ENST00000356922 PEX10O60683 326 aa4.77□□□□□ -1.65
LIG4-201ENST00000356922 TNFAIP1Q13829 316 aa4.77□□□□□ -1.65
LIG4-201ENST00000356922 CERKLQ49MI3 558 aaPredicted RBP4.77□□□□□ -1.65
LIG4-201ENST00000356922 LDLRAD1Q5T700 205 aa4.77□□□□□ -1.65
LIG4-201ENST00000356922 POTEEQ6S8J3 1075 aa4.77□□□□□ -1.65
LIG4-201ENST00000356922 MFSD6Q6ZSS7 791 aa4.77□□□□□ -1.65
LIG4-201ENST00000356922 SAPCD2Q86UD0 394 aa4.77□□□□□ -1.65
LIG4-201ENST00000356922 CEP95Q96GE4 821 aa4.77□□□□□ -1.65
LIG4-201ENST00000356922 EHD4Q9H223 541 aa4.77□□□□□ -1.65
LIG4-201ENST00000356922 TOMM22Q9NS69 142 aa4.77□□□□□ -1.65
LIG4-201ENST00000356922 IGKV6D-41A0A0C4DH26 115 aa4.77□□□□□ -1.65
LIG4-201ENST00000356922 CASTP20810 708 aaKnown RBP4.77□□□□□ -1.65
LIG4-201ENST00000356922 RAB3GAP1Q15042 981 aa4.77□□□□□ -1.65
LIG4-201ENST00000356922 CRACR2BQ8N4Y2 399 aaPredicted RBP4.77□□□□□ -1.65
LIG4-201ENST00000356922 MYL10Q9BUA6 226 aa4.77□□□□□ -1.65
LIG4-201ENST00000356922 MKNK2Q9HBH9 465 aa4.77□□□□□ -1.65
LIG4-201ENST00000356922 BRPF3Q9ULD4 1205 aa4.77□□□□□ -1.65
LIG4-201ENST00000356922 BAZ2BQ9UIF8 2168 aaKnown RBP4.77□□□□□ -1.65
LIG4-201ENST00000356922 LARGE1O95461 756 aa4.77□□□□□ -1.65
LIG4-201ENST00000356922 RXRAP19793 462 aa4.77□□□□□ -1.65
LIG4-201ENST00000356922 TNNI2P48788 182 aa4.77□□□□□ -1.65
LIG4-201ENST00000356922 TOB2Q14106 344 aaPredicted RBP4.77□□□□□ -1.65
LIG4-201ENST00000356922 SEC23AQ15436 765 aa4.77□□□□□ -1.65
LIG4-201ENST00000356922 SLC35G1Q2M3R5 365 aa4.77□□□□□ -1.65
LIG4-201ENST00000356922 ENAHQ8N8S7 591 aaPredicted RBP4.77□□□□□ -1.65
LIG4-201ENST00000356922 NEK1Q96PY6 1258 aa4.77□□□□□ -1.65
LIG4-201ENST00000356922 CPVLQ9H3G5 476 aa4.77□□□□□ -1.65
LIG4-201ENST00000356922 ELP3Q9H9T3 547 aa4.77□□□□□ -1.65
LIG4-201ENST00000356922 ZSWIM6Q9HCJ5 1215 aa4.77□□□□□ -1.65
LIG4-201ENST00000356922 TSHZ2Q9NRE2 1034 aa4.77□□□□□ -1.65
LIG4-201ENST00000356922 MPHOSPH10O00566 681 aaKnown RBP4.77□□□□□ -1.65
LIG4-201ENST00000356922 IRF6O14896 467 aa4.77□□□□□ -1.65
LIG4-201ENST00000356922 ORC4O43929 436 aa4.77□□□□□ -1.65
LIG4-201ENST00000356922 PTPRAP18433 802 aa4.77□□□□□ -1.65
LIG4-201ENST00000356922 NOL8Q76FK4 1167 aaKnown RBP4.77□□□□□ -1.65
LIG4-201ENST00000356922 CERS3Q8IU89 383 aa4.77□□□□□ -1.65
LIG4-201ENST00000356922 IL17RAQ96F46 866 aa4.77□□□□□ -1.65
LIG4-201ENST00000356922 TTC14Q96N46 770 aa4.77□□□□□ -1.65
LIG4-201ENST00000356922 CTNNA3Q9UI47 895 aa4.77□□□□□ -1.65
LIG4-201ENST00000356922 HERC5Q9UII4 1024 aaKnown RBP4.77□□□□□ -1.65
LIG4-201ENST00000356922 OTOFQ9HC10 1997 aa4.76□□□□□ -1.65
LIG4-201ENST00000356922 PAPPA2Q9BXP8 1791 aa4.76□□□□□ -1.65
LIG4-201ENST00000356922 COL2A1P02458 1487 aaPredicted RBP4.76□□□□□ -1.65
LIG4-201ENST00000356922 LAMB1P07942 1786 aa4.76□□□□□ -1.65
LIG4-201ENST00000356922 RANBP2P49792 3224 aaKnown RBP4.76□□□□□ -1.65
LIG4-201ENST00000356922 HLA-DOAP06340 250 aa4.76□□□□□ -1.65
LIG4-201ENST00000356922 EEF2P13639 858 aaKnown RBP4.76□□□□□ -1.65
LIG4-201ENST00000356922 ST3GAL1Q11201 340 aa4.76□□□□□ -1.65
LIG4-201ENST00000356922 MOGSQ13724 837 aa4.76□□□□□ -1.65
LIG4-201ENST00000356922 TTLL12Q14166 644 aaPredicted RBP4.76□□□□□ -1.65
LIG4-201ENST00000356922 ZYXQ15942 572 aaKnown RBP4.76□□□□□ -1.65
LIG4-201ENST00000356922 MAP3K11Q16584 847 aa4.76□□□□□ -1.65
LIG4-201ENST00000356922 ABCB5Q2M3G0 1257 aa4.76□□□□□ -1.65
LIG4-201ENST00000356922 SUPT20HL1Q3ZLR7 823 aa4.76□□□□□ -1.65
LIG4-201ENST00000356922 NBPF11Q86T75 865 aa4.76□□□□□ -1.65
LIG4-201ENST00000356922 SPICE1Q8N0Z3 855 aa4.76□□□□□ -1.65
LIG4-201ENST00000356922 CMTR1Q8N1G2 835 aaKnown RBP4.76□□□□□ -1.65
LIG4-201ENST00000356922 NEDD1Q8NHV4 660 aa4.76□□□□□ -1.65
LIG4-201ENST00000356922 RBM46Q8TBY0 533 aaKnown RBP4.76□□□□□ -1.65
LIG4-201ENST00000356922 NUP88Q99567 741 aaPredicted RBP4.76□□□□□ -1.65
LIG4-201ENST00000356922 GBA2Q9HCG7 927 aaPredicted RBP4.76□□□□□ -1.65
LIG4-201ENST00000356922 MTMR4Q9NYA4 1195 aa4.76□□□□□ -1.65
LIG4-201ENST00000356922 ZBTB21Q9ULJ3 1066 aa4.76□□□□□ -1.65
LIG4-201ENST00000356922 MTMR7Q9Y216 660 aa4.76□□□□□ -1.65
LIG4-201ENST00000356922 ZHX2Q9Y6X8 837 aa4.76□□□□□ -1.65
LIG4-201ENST00000356922 TSPY2A6NKD2 308 aa4.76□□□□□ -1.65
LIG4-201ENST00000356922 PRC1O43663 620 aa4.76□□□□□ -1.65
LIG4-201ENST00000356922 NOVP48745 357 aa4.76□□□□□ -1.65
LIG4-201ENST00000356922 NEK4P51957 841 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms