RNA–Protein interactions for RNA: ENST00000355480.9

COL18A1-202, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL18A1, Length 5,924 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-202ENST00000355480 FAM47AQ5JRC9 791 aa20.08■□□□□ 0.81
COL18A1-202ENST00000355480 BICRAQ9NZM4 1560 aa20.08■□□□□ 0.81
COL18A1-202ENST00000355480 GCNT3O95395 438 aa20.08■□□□□ 0.81
COL18A1-202ENST00000355480 UBL4BQ8N7F7 174 aa20.08■□□□□ 0.81
COL18A1-202ENST00000355480 USP40Q9NVE5 1235 aa20.08■□□□□ 0.81
COL18A1-202ENST00000355480 TPD52P55327 224 aaPredicted RBP20.08■□□□□ 0.8
COL18A1-202ENST00000355480 IRX5P78411 483 aaPredicted RBP20.08■□□□□ 0.8
COL18A1-202ENST00000355480 PNMA6EA0A0J9YXQ4 647 aa20.08■□□□□ 0.8
COL18A1-202ENST00000355480 STK10O94804 968 aaKnown RBP20.08■□□□□ 0.8
COL18A1-202ENST00000355480 GTF2IP78347 998 aa20.08■□□□□ 0.8
COL18A1-202ENST00000355480 hCG_1642624A0A1W2PR95 340 aa20.08■□□□□ 0.8
COL18A1-202ENST00000355480 SEC24BO95487 1268 aa20.08■□□□□ 0.8
COL18A1-202ENST00000355480 CLUL1Q15846 466 aa20.08■□□□□ 0.8
COL18A1-202ENST00000355480 UTP14CQ5TAP6 766 aaKnown RBP20.08■□□□□ 0.8
COL18A1-202ENST00000355480 KCNJ14Q9UNX9 436 aa20.08■□□□□ 0.8
COL18A1-202ENST00000355480 H7C1D1 291 aa20.07■□□□□ 0.8
COL18A1-202ENST00000355480 TUBBP07437 444 aa20.07■□□□□ 0.8
COL18A1-202ENST00000355480 KRT40Q6A162 431 aa20.07■□□□□ 0.8
COL18A1-202ENST00000355480 FAM173BQ6P4H8 233 aa20.07■□□□□ 0.8
COL18A1-202ENST00000355480 NELFCDQ8IXH7 590 aa20.07■□□□□ 0.8
COL18A1-202ENST00000355480 MRRFQ96E11 262 aaKnown RBP20.07■□□□□ 0.8
COL18A1-202ENST00000355480 TIGD1Q96MW7 591 aa20.07■□□□□ 0.8
COL18A1-202ENST00000355480 MRPL44Q9H9J2 332 aaKnown RBP20.07■□□□□ 0.8
COL18A1-202ENST00000355480 ERCC3P19447 782 aa20.07■□□□□ 0.8
COL18A1-202ENST00000355480 CABP7Q86V35 215 aa20.07■□□□□ 0.8
COL18A1-202ENST00000355480 CCDC160A6NGH7 325 aa20.06■□□□□ 0.8
COL18A1-202ENST00000355480 CD19P15391 556 aa20.06■□□□□ 0.8
COL18A1-202ENST00000355480 RPS8P62241 208 aaKnown RBP20.06■□□□□ 0.8
COL18A1-202ENST00000355480 DCUN1D2Q6PH85 259 aa20.06■□□□□ 0.8
COL18A1-202ENST00000355480 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.06■□□□□ 0.89e-8■■■□□ 15.6
COL18A1-202ENST00000355480 CTTNBP2NLQ9P2B4 639 aa20.06■□□□□ 0.8
COL18A1-202ENST00000355480 TTF2Q9UNY4 1162 aaKnown RBP20.06■□□□□ 0.8
COL18A1-202ENST00000355480 BAG6P46379 1132 aa20.06■□□□□ 0.8
COL18A1-202ENST00000355480 BIVM-ERCC5R4GMW8 1640 aa20.06■□□□□ 0.8
COL18A1-202ENST00000355480 MLKLQ8NB16 471 aa20.06■□□□□ 0.8
COL18A1-202ENST00000355480 NAPGQ99747 312 aaPredicted RBP20.06■□□□□ 0.8
COL18A1-202ENST00000355480 SLAIN2Q9P270 581 aa20.06■□□□□ 0.8
COL18A1-202ENST00000355480 ACTN4O43707 911 aaKnown RBP20.06■□□□□ 0.8
COL18A1-202ENST00000355480 GMNNO75496 209 aa20.06■□□□□ 0.8
COL18A1-202ENST00000355480 MFSD14BQ5SR56 506 aa20.06■□□□□ 0.8
COL18A1-202ENST00000355480 BEND3Q5T5X7 828 aa20.06■□□□□ 0.8
COL18A1-202ENST00000355480 USTQ9Y2C2 406 aa20.06■□□□□ 0.8
COL18A1-202ENST00000355480 EBAG9O00559 213 aa20.06■□□□□ 0.8
COL18A1-202ENST00000355480 ATP5DP30049 168 aa20.06■□□□□ 0.8
COL18A1-202ENST00000355480 SLC9C1Q4G0N8 1177 aa20.06■□□□□ 0.8
COL18A1-202ENST00000355480 CEP128Q6ZU80 1094 aa20.06■□□□□ 0.8
COL18A1-202ENST00000355480 NBPF11Q86T75 865 aa20.06■□□□□ 0.8
COL18A1-202ENST00000355480 REXO1Q8N1G1 1221 aaKnown RBP20.06■□□□□ 0.8
COL18A1-202ENST00000355480 NUP58Q9BVL2 599 aa20.06■□□□□ 0.8
COL18A1-202ENST00000355480 CLSTN2Q9H4D0 955 aa20.06■□□□□ 0.8
COL18A1-202ENST00000355480 ZHX1Q9UKY1 873 aaPredicted RBP20.06■□□□□ 0.8
COL18A1-202ENST00000355480 GPATCH11Q8N954 259 aa20.05■□□□□ 0.8
COL18A1-202ENST00000355480 FANCCQ00597 558 aa20.05■□□□□ 0.8
COL18A1-202ENST00000355480 PPP2R3AQ06190 1150 aa20.05■□□□□ 0.8
COL18A1-202ENST00000355480 TEKT1Q969V4 418 aa20.05■□□□□ 0.8
COL18A1-202ENST00000355480 CLCN1P35523 988 aa20.05■□□□□ 0.8
COL18A1-202ENST00000355480 C8orf74Q6P047 294 aa20.05■□□□□ 0.8
COL18A1-202ENST00000355480 ARPP21Q9UBL0 812 aaPredicted RBP20.05■□□□□ 0.8
COL18A1-202ENST00000355480 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP20.05■□□□□ 0.8
COL18A1-202ENST00000355480 CSADQ9Y600 493 aa20.05■□□□□ 0.8
COL18A1-202ENST00000355480 ZNF202O95125 648 aa20.04■□□□□ 0.8
COL18A1-202ENST00000355480 FAM76AQ8TAV0 307 aa20.04■□□□□ 0.8
COL18A1-202ENST00000355480 GLG1Q92896 1179 aa20.04■□□□□ 0.8
COL18A1-202ENST00000355480 PFDN4Q9NQP4 134 aa20.04■□□□□ 0.8
COL18A1-202ENST00000355480 GABPAQ06546 454 aa20.04■□□□□ 0.8
COL18A1-202ENST00000355480 NLRX1Q86UT6 975 aa20.04■□□□□ 0.8
COL18A1-202ENST00000355480 VPS54Q9P1Q0 977 aa20.04■□□□□ 0.8
COL18A1-202ENST00000355480 COL17A1Q9UMD9 1497 aaPredicted RBP20.04■□□□□ 0.8
COL18A1-202ENST00000355480 CTSWP56202 376 aa20.04■□□□□ 0.8
COL18A1-202ENST00000355480 PPARAQ07869 468 aa20.04■□□□□ 0.8
COL18A1-202ENST00000355480 PPP2R5DQ14738 602 aa20.04■□□□□ 0.8
COL18A1-202ENST00000355480 ZMYND15Q9H091 742 aa20.04■□□□□ 0.8
COL18A1-202ENST00000355480 TAB2Q9NYJ8 693 aa20.04■□□□□ 0.8
COL18A1-202ENST00000355480 BCS1LQ9Y276 419 aa20.04■□□□□ 0.8
COL18A1-202ENST00000355480 UTP11Q9Y3A2 253 aaKnown RBP20.04■□□□□ 0.8
COL18A1-202ENST00000355480 PRPF6O94906 941 aaKnown RBP20.04■□□□□ 0.8
COL18A1-202ENST00000355480 TPH2Q8IWU9 490 aa20.04■□□□□ 0.8
COL18A1-202ENST00000355480 EIF4A1P60842 406 aaKnown RBP20.04■□□□□ 0.8
COL18A1-202ENST00000355480 SPOUT1Q5T280 376 aaKnown RBP20.04■□□□□ 0.8
COL18A1-202ENST00000355480 HDXQ7Z353 690 aa20.04■□□□□ 0.8
COL18A1-202ENST00000355480 CCDC125Q86Z20 511 aa20.03■□□□□ 0.8
COL18A1-202ENST00000355480 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP20.03■□□□□ 0.8
COL18A1-202ENST00000355480 ERVV-2B6SEH9 535 aa20.03■□□□□ 0.8
COL18A1-202ENST00000355480 EVCP57679 992 aa20.03■□□□□ 0.8
COL18A1-202ENST00000355480 GPIHBP1Q8IV16 184 aa20.03■□□□□ 0.8
COL18A1-202ENST00000355480 CHURC1Q8WUH1 139 aa20.03■□□□□ 0.8
COL18A1-202ENST00000355480 PAGR1Q9BTK6 254 aa20.03■□□□□ 0.8
COL18A1-202ENST00000355480 PPANQ9NQ55 473 aaKnown RBP20.03■□□□□ 0.8
COL18A1-202ENST00000355480 BCRP11274 1271 aa20.03■□□□□ 0.8
COL18A1-202ENST00000355480 TNFAIP1Q13829 316 aa20.03■□□□□ 0.8
COL18A1-202ENST00000355480 GABPB2Q8TAK5 448 aaPredicted RBP20.03■□□□□ 0.8
COL18A1-202ENST00000355480 SECISBP2LQ93073 1101 aaKnown RBP20.03■□□□□ 0.8
COL18A1-202ENST00000355480 CFAP57Q96MR6 1250 aa20.03■□□□□ 0.8
COL18A1-202ENST00000355480 POSTNQ15063 836 aa20.03■□□□□ 0.8
COL18A1-202ENST00000355480 TBC1D31Q96DN5 1066 aa20.03■□□□□ 0.8
COL18A1-202ENST00000355480 TRIM35Q9UPQ4 493 aa20.03■□□□□ 0.8
COL18A1-202ENST00000355480 MAPKBP1O60336 1514 aa20.02■□□□□ 0.8
COL18A1-202ENST00000355480 ITIH3Q06033 890 aa20.02■□□□□ 0.8
COL18A1-202ENST00000355480 ARHGAP30Q7Z6I6 1101 aaPredicted RBP20.02■□□□□ 0.8
COL18A1-202ENST00000355480 AS3MTQ9HBK9 375 aa20.02■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms