RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 CASP7P55210 303 aa7.7□□□□□ -1.18
VPS39-202ENST00000348544 STX17P56962 302 aa7.7□□□□□ -1.18
VPS39-202ENST00000348544 CUL4BQ13620 913 aa7.7□□□□□ -1.18
VPS39-202ENST00000348544 IMMTQ16891 758 aaKnown RBP7.7□□□□□ -1.18
VPS39-202ENST00000348544 CDKAL1Q5VV42 579 aa7.7□□□□□ -1.18
VPS39-202ENST00000348544 USP49Q70CQ1 688 aa7.7□□□□□ -1.18
VPS39-202ENST00000348544 LRP10Q7Z4F1 713 aa7.7□□□□□ -1.18
VPS39-202ENST00000348544 SPATA20Q8TB22 786 aa7.7□□□□□ -1.18
VPS39-202ENST00000348544 COG1Q8WTW3 980 aa7.7□□□□□ -1.18
VPS39-202ENST00000348544 SMARCC1Q92922 1105 aaPredicted RBP7.7□□□□□ -1.18
VPS39-202ENST00000348544 MMS19Q96T76 1030 aa7.7□□□□□ -1.18
VPS39-202ENST00000348544 RABEP2Q9H5N1 569 aa7.7□□□□□ -1.18
VPS39-202ENST00000348544 FBXO2Q9UK22 296 aaPredicted RBP7.7□□□□□ -1.18
VPS39-202ENST00000348544 AMOTL2Q9Y2J4 779 aa7.7□□□□□ -1.18
VPS39-202ENST00000348544 OVOS2A0A0G2JMS6 1433 aa7.7□□□□□ -1.18
VPS39-202ENST00000348544 GRIN2DO15399 1336 aa7.7□□□□□ -1.18
VPS39-202ENST00000348544 MYH8P13535 1937 aa7.7□□□□□ -1.18
VPS39-202ENST00000348544 PLEKHG1Q9ULL1 1385 aa7.7□□□□□ -1.18
VPS39-202ENST00000348544 ERCC5P28715 1186 aaPredicted RBP7.7□□□□□ -1.18
VPS39-202ENST00000348544 SLC39A6Q13433 755 aa7.7□□□□□ -1.18
VPS39-202ENST00000348544 STIM1Q13586 685 aa7.7□□□□□ -1.18
VPS39-202ENST00000348544 LMBR1LQ6UX01 489 aa7.7□□□□□ -1.18
VPS39-202ENST00000348544 TRAPPC11Q7Z392 1133 aa7.7□□□□□ -1.18
VPS39-202ENST00000348544 DACH1Q9UI36 760 aa7.7□□□□□ -1.18
VPS39-202ENST00000348544 REXO2Q9Y3B8 237 aaKnown RBP7.7□□□□□ -1.18
VPS39-202ENST00000348544 AFDNP55196 1824 aaKnown RBP7.7□□□□□ -1.18
VPS39-202ENST00000348544 ATP5J2-PTCD1G3V325 749 aa7.69□□□□□ -1.18
VPS39-202ENST00000348544 ENC1O14682 589 aa7.69□□□□□ -1.18
VPS39-202ENST00000348544 PTCD1O75127 700 aaKnown RBP7.69□□□□□ -1.18
VPS39-202ENST00000348544 IFIT1P09914 478 aaKnown RBP7.69□□□□□ -1.18
VPS39-202ENST00000348544 NTRK3Q16288 839 aa7.69□□□□□ -1.18
VPS39-202ENST00000348544 C1orf141Q5JVX7 400 aa7.69□□□□□ -1.18
VPS39-202ENST00000348544 KLHL10Q6JEL2 608 aa7.69□□□□□ -1.18
VPS39-202ENST00000348544 CYB5R4Q7L1T6 521 aa7.69□□□□□ -1.18
VPS39-202ENST00000348544 C14orf37Q86TY3 774 aa7.69□□□□□ -1.18
VPS39-202ENST00000348544 TRIML1Q8N9V2 468 aa7.69□□□□□ -1.18
VPS39-202ENST00000348544 CCDC148Q8NFR7 591 aa7.69□□□□□ -1.18
VPS39-202ENST00000348544 NCOA7Q8NI08 942 aa7.69□□□□□ -1.18
VPS39-202ENST00000348544 SLF1Q9BQI6 1058 aa7.69□□□□□ -1.18
VPS39-202ENST00000348544 WWC3Q9ULE0 1092 aa7.69□□□□□ -1.18
VPS39-202ENST00000348544 UBN2Q6ZU65 1347 aa7.69□□□□□ -1.18
VPS39-202ENST00000348544 KDM6AO15550 1401 aaPredicted RBP7.69□□□□□ -1.18
VPS39-202ENST00000348544 SRGAP2O75044 1071 aa7.69□□□□□ -1.18
VPS39-202ENST00000348544 PTPREP23469 700 aa7.69□□□□□ -1.18
VPS39-202ENST00000348544 CASP1P29466 404 aa7.69□□□□□ -1.18
VPS39-202ENST00000348544 METAP2P50579 478 aaKnown RBP eCLIP7.69□□□□□ -1.18
VPS39-202ENST00000348544 DPYDQ12882 1025 aa7.69□□□□□ -1.18
VPS39-202ENST00000348544 SPATA1Q5VX52 437 aa7.69□□□□□ -1.18
VPS39-202ENST00000348544 CNGA4Q8IV77 575 aa7.69□□□□□ -1.18
VPS39-202ENST00000348544 FAM217BQ9NTX9 383 aaPredicted RBP7.69□□□□□ -1.18
VPS39-202ENST00000348544 ABHD10Q9NUJ1 306 aa7.69□□□□□ -1.18
VPS39-202ENST00000348544 MYO1AQ9UBC5 1043 aa7.69□□□□□ -1.18
VPS39-202ENST00000348544 MYO5AQ9Y4I1 1855 aaKnown RBP7.69□□□□□ -1.18
VPS39-202ENST00000348544 SYNRGQ9UMZ2 1314 aa7.69□□□□□ -1.18
VPS39-202ENST00000348544 TNRQ92752 1358 aa7.69□□□□□ -1.18
VPS39-202ENST00000348544 MST1RQ04912 1400 aa7.68□□□□□ -1.18
VPS39-202ENST00000348544 A0A087WZG4 1122 aa7.68□□□□□ -1.18
VPS39-202ENST00000348544 A0A087X0B3 334 aa7.68□□□□□ -1.18
VPS39-202ENST00000348544 ABCB7O75027 752 aa7.68□□□□□ -1.18
VPS39-202ENST00000348544 COBLO75128 1261 aa7.68□□□□□ -1.18
VPS39-202ENST00000348544 ATP1A1P05023 1023 aaKnown RBP7.68□□□□□ -1.18
VPS39-202ENST00000348544 FOXO4P98177 505 aa7.68□□□□□ -1.18
VPS39-202ENST00000348544 TRDNQ13061 729 aa7.68□□□□□ -1.18
VPS39-202ENST00000348544 LRRC24Q50LG9 513 aa7.68□□□□□ -1.18
VPS39-202ENST00000348544 APOA5Q6Q788 366 aa7.68□□□□□ -1.18
VPS39-202ENST00000348544 ANKRD13DQ6ZTN6 518 aa7.68□□□□□ -1.18
VPS39-202ENST00000348544 EP400NLQ6ZTU2 488 aa7.68□□□□□ -1.18
VPS39-202ENST00000348544 RALYLQ86SE5 291 aaKnown RBP7.68□□□□□ -1.18
VPS39-202ENST00000348544 TICAM2Q86XR7 235 aa7.68□□□□□ -1.18
VPS39-202ENST00000348544 TMTC1Q8IUR5 882 aa7.68□□□□□ -1.18
VPS39-202ENST00000348544 TBC1D10CQ8IV04 446 aa7.68□□□□□ -1.18
VPS39-202ENST00000348544 SMYD4Q8IYR2 804 aaPredicted RBP7.68□□□□□ -1.18
VPS39-202ENST00000348544 FAM76AQ8TAV0 307 aa7.68□□□□□ -1.18
VPS39-202ENST00000348544 CCDC51Q96ER9 411 aa7.68□□□□□ -1.18
VPS39-202ENST00000348544 SELENOOQ9BVL4 669 aa7.68□□□□□ -1.18
VPS39-202ENST00000348544 FAM107BQ9H098 131 aa7.68□□□□□ -1.18
VPS39-202ENST00000348544 PUS7LQ9H0K6 701 aaKnown RBP7.68□□□□□ -1.18
VPS39-202ENST00000348544 ANGEL1Q9UNK9 670 aaKnown RBP7.68□□□□□ -1.18
VPS39-202ENST00000348544 TFR2Q9UP52 801 aa7.68□□□□□ -1.18
VPS39-202ENST00000348544 SPEF2Q9C093 1822 aa7.68□□□□□ -1.18
VPS39-202ENST00000348544 BTBD18B2RXH4 712 aa7.68□□□□□ -1.18
VPS39-202ENST00000348544 EBAG9O00559 213 aa7.68□□□□□ -1.18
VPS39-202ENST00000348544 SH2B2O14492 632 aaPredicted RBP7.68□□□□□ -1.18
VPS39-202ENST00000348544 CCDC172P0C7W6 258 aa7.68□□□□□ -1.18
VPS39-202ENST00000348544 MAP2K2P36507 400 aa7.68□□□□□ -1.18
VPS39-202ENST00000348544 CCT6AP40227 531 aaKnown RBP7.68□□□□□ -1.18
VPS39-202ENST00000348544 MNAT1P51948 309 aa7.68□□□□□ -1.18
VPS39-202ENST00000348544 WASHC4Q2M389 1173 aa7.68□□□□□ -1.18
VPS39-202ENST00000348544 AMOTQ4VCS5 1084 aa7.68□□□□□ -1.18
VPS39-202ENST00000348544 MICU3Q86XE3 530 aa7.68□□□□□ -1.18
VPS39-202ENST00000348544 NOSTRINQ8IVI9 506 aa7.68□□□□□ -1.18
VPS39-202ENST00000348544 CNPY4Q8N129 248 aa7.68□□□□□ -1.18
VPS39-202ENST00000348544 CHP1Q99653 195 aa7.68□□□□□ -1.18
VPS39-202ENST00000348544 MYL10Q9BUA6 226 aa7.68□□□□□ -1.18
VPS39-202ENST00000348544 GUCA1BQ9UMX6 200 aa7.68□□□□□ -1.18
VPS39-202ENST00000348544 PCDHB6Q9Y5E3 794 aa7.68□□□□□ -1.18
VPS39-202ENST00000348544 ITIH6Q6UXX5 1313 aa7.68□□□□□ -1.18
VPS39-202ENST00000348544 WDR19Q8NEZ3 1342 aa7.68□□□□□ -1.18
VPS39-202ENST00000348544 BCL9LQ86UU0 1499 aa7.68□□□□□ -1.18
VPS39-202ENST00000348544 TARSL2A2RTX5 802 aaKnown RBP7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms