RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 TM4SF1P30408 202 aa17.78■□□□□ 0.44
UPF3B-202ENST00000345865 MDM2Q00987 491 aaPredicted RBP17.78■□□□□ 0.44
UPF3B-202ENST00000345865 NGLY1Q96IV0 654 aa17.78■□□□□ 0.44
UPF3B-202ENST00000345865 JAG2Q9Y219 1238 aa17.78■□□□□ 0.44
UPF3B-202ENST00000345865 BTAF1O14981 1849 aa17.78■□□□□ 0.44
UPF3B-202ENST00000345865 RGL2O15211 777 aa17.77■□□□□ 0.44
UPF3B-202ENST00000345865 SKILP12757 684 aa17.77■□□□□ 0.44
UPF3B-202ENST00000345865 ATP1A3P13637 1013 aa17.77■□□□□ 0.44
UPF3B-202ENST00000345865 BMP6P22004 513 aa17.77■□□□□ 0.44
UPF3B-202ENST00000345865 LMOD1P29536 600 aaPredicted RBP17.77■□□□□ 0.44
UPF3B-202ENST00000345865 TROAPQ12815 778 aa17.77■□□□□ 0.44
UPF3B-202ENST00000345865 RILPL1Q5EBL4 403 aa17.77■□□□□ 0.44
UPF3B-202ENST00000345865 EARS2Q5JPH6 523 aaKnown RBP17.77■□□□□ 0.44
UPF3B-202ENST00000345865 RC3H1Q5TC82 1133 aaKnown RBP17.77■□□□□ 0.44
UPF3B-202ENST00000345865 ZNF710Q8N1W2 664 aa17.77■□□□□ 0.44
UPF3B-202ENST00000345865 RNF26Q9BY78 433 aaPredicted RBP17.77■□□□□ 0.44
UPF3B-202ENST00000345865 NYXQ9GZU5 481 aa17.77■□□□□ 0.44
UPF3B-202ENST00000345865 AATFQ9NY61 560 aaKnown RBP eCLIP17.77■□□□□ 0.44
UPF3B-202ENST00000345865 VPS54Q9P1Q0 977 aa17.77■□□□□ 0.44
UPF3B-202ENST00000345865 PCDHA5Q9Y5H7 936 aa17.77■□□□□ 0.44
UPF3B-202ENST00000345865 NMT2O60551 498 aa17.77■□□□□ 0.43
UPF3B-202ENST00000345865 HIBADHP31937 336 aaKnown RBP17.77■□□□□ 0.43
UPF3B-202ENST00000345865 IFIT1BQ5T764 474 aaKnown RBP17.77■□□□□ 0.43
UPF3B-202ENST00000345865 CNNM3Q8NE01 707 aa17.77■□□□□ 0.43
UPF3B-202ENST00000345865 OSBPL5Q9H0X9 879 aaPredicted RBP17.77■□□□□ 0.43
UPF3B-202ENST00000345865 CABP5Q9NP86 173 aa17.77■□□□□ 0.43
UPF3B-202ENST00000345865 BAZ2BQ9UIF8 2168 aaKnown RBP17.76■□□□□ 0.43
UPF3B-202ENST00000345865 SEMA3EO15041 775 aa17.76■□□□□ 0.43
UPF3B-202ENST00000345865 SMC2O95347 1197 aa17.76■□□□□ 0.43
UPF3B-202ENST00000345865 ATP2B1P20020 1258 aa17.76■□□□□ 0.43
UPF3B-202ENST00000345865 CHAF1AQ13111 956 aaPredicted RBP17.76■□□□□ 0.43
UPF3B-202ENST00000345865 USP49Q70CQ1 688 aa17.76■□□□□ 0.43
UPF3B-202ENST00000345865 DCP1AQ9NPI6 582 aaPredicted RBP17.76■□□□□ 0.43
UPF3B-202ENST00000345865 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.76■□□□□ 0.43
UPF3B-202ENST00000345865 DLEC1Q9Y238 1755 aa17.76■□□□□ 0.43
UPF3B-202ENST00000345865 IRS2Q9Y4H2 1338 aa17.76■□□□□ 0.43
UPF3B-202ENST00000345865 IKBKBO14920 756 aa17.76■□□□□ 0.43
UPF3B-202ENST00000345865 NEMFO60524 1076 aa17.76■□□□□ 0.43
UPF3B-202ENST00000345865 ZPR1O75312 459 aa17.75■□□□□ 0.43
UPF3B-202ENST00000345865 CYP2D6P10635 497 aa17.75■□□□□ 0.43
UPF3B-202ENST00000345865 TNNT1P13805 278 aa17.75■□□□□ 0.43
UPF3B-202ENST00000345865 ARHGEF1Q92888 912 aaKnown RBP17.75■□□□□ 0.43
UPF3B-202ENST00000345865 V9GY48 417 aaPredicted RBP17.75■□□□□ 0.43
UPF3B-202ENST00000345865 SMTNL1A8MU46 457 aa17.75■□□□□ 0.43
UPF3B-202ENST00000345865 WNT7AO00755 349 aa17.75■□□□□ 0.43
UPF3B-202ENST00000345865 PDE4BQ07343 736 aa17.75■□□□□ 0.43
UPF3B-202ENST00000345865 TPD52L1Q16890 204 aaPredicted RBP17.75■□□□□ 0.43
UPF3B-202ENST00000345865 PHF20Q9BVI0 1012 aa17.75■□□□□ 0.43
UPF3B-202ENST00000345865 EP400Q96L91 3159 aa17.75■□□□□ 0.43
UPF3B-202ENST00000345865 PDS5AQ29RF7 1337 aaKnown RBP17.74■□□□□ 0.43
UPF3B-202ENST00000345865 POLR2DO15514 142 aaKnown RBP17.74■□□□□ 0.43
UPF3B-202ENST00000345865 PRR29P0C7W0 189 aa17.74■□□□□ 0.43
UPF3B-202ENST00000345865 FANCCQ00597 558 aa17.74■□□□□ 0.43
UPF3B-202ENST00000345865 PPP2R5BQ15173 497 aa17.74■□□□□ 0.43
UPF3B-202ENST00000345865 NOM1Q5C9Z4 860 aaKnown RBP17.74■□□□□ 0.43
UPF3B-202ENST00000345865 FAM47AQ5JRC9 791 aa17.74■□□□□ 0.43
UPF3B-202ENST00000345865 ARMCX5Q6P1M9 558 aa17.74■□□□□ 0.43
UPF3B-202ENST00000345865 TPTE2Q6XPS3 522 aa17.74■□□□□ 0.43
UPF3B-202ENST00000345865 TMC6Q7Z403 805 aa17.74■□□□□ 0.43
UPF3B-202ENST00000345865 CATIPQ7Z7H3 387 aa17.74■□□□□ 0.43
UPF3B-202ENST00000345865 IQCA1Q86XH1 822 aa17.74■□□□□ 0.43
UPF3B-202ENST00000345865 DPF2Q92785 391 aa17.74■□□□□ 0.43
UPF3B-202ENST00000345865 TNRC6CQ9HCJ0 1690 aaKnown RBP17.74■□□□□ 0.43
UPF3B-202ENST00000345865 PRPF3O43395 683 aaKnown RBP17.73■□□□□ 0.43
UPF3B-202ENST00000345865 NPY5RQ15761 445 aa17.73■□□□□ 0.43
UPF3B-202ENST00000345865 IMPACTQ9P2X3 320 aa17.73■□□□□ 0.43
UPF3B-202ENST00000345865 SERTAD1Q9UHV2 236 aa17.73■□□□□ 0.43
UPF3B-202ENST00000345865 CCNL1Q9UK58 526 aaPredicted RBP17.73■□□□□ 0.43
UPF3B-202ENST00000345865 SRPRBQ9Y5M8 271 aaKnown RBP17.73■□□□□ 0.43
UPF3B-202ENST00000345865 TOM1O60784 492 aa17.73■□□□□ 0.43
UPF3B-202ENST00000345865 GRAMD1CQ8IYS0 662 aa17.73■□□□□ 0.43
UPF3B-202ENST00000345865 ANKRD2Q9GZV1 360 aa17.73■□□□□ 0.43
UPF3B-202ENST00000345865 ORC4O43929 436 aa17.72■□□□□ 0.43
UPF3B-202ENST00000345865 AKAP17AQ02040 695 aaKnown RBP17.72■□□□□ 0.43
UPF3B-202ENST00000345865 SLC4A8Q2Y0W8 1093 aa17.72■□□□□ 0.43
UPF3B-202ENST00000345865 CSRNP2Q9H175 543 aa17.72■□□□□ 0.43
UPF3B-202ENST00000345865 RTCBQ9Y3I0 505 aaKnown RBP17.72■□□□□ 0.43
UPF3B-202ENST00000345865 LAMB1P07942 1786 aa17.72■□□□□ 0.43
UPF3B-202ENST00000345865 KIAA1551Q9HCM1 1747 aa17.72■□□□□ 0.43
UPF3B-202ENST00000345865 PCP11498 1178 aaKnown RBP17.72■□□□□ 0.43
UPF3B-202ENST00000345865 GSDMDP57764 484 aa17.72■□□□□ 0.43
UPF3B-202ENST00000345865 MYL5Q02045 173 aa17.72■□□□□ 0.43
UPF3B-202ENST00000345865 ELOA2Q8IYF1 753 aaPredicted RBP17.72■□□□□ 0.43
UPF3B-202ENST00000345865 SRBD1Q8N5C6 995 aaKnown RBP17.72■□□□□ 0.43
UPF3B-202ENST00000345865 PDILTQ8N807 584 aa17.72■□□□□ 0.43
UPF3B-202ENST00000345865 ZNF579Q8NAF0 562 aaKnown RBP17.72■□□□□ 0.43
UPF3B-202ENST00000345865 TRMT1Q9NXH9 659 aaKnown RBP17.72■□□□□ 0.43
UPF3B-202ENST00000345865 CCDC88AQ3V6T2 1871 aa17.72■□□□□ 0.43
UPF3B-202ENST00000345865 VEGFAP15692 232 aaPredicted RBP17.71■□□□□ 0.43
UPF3B-202ENST00000345865 POSTNQ15063 836 aa17.71■□□□□ 0.43
UPF3B-202ENST00000345865 TMTC3Q6ZXV5 915 aa17.71■□□□□ 0.43
UPF3B-202ENST00000345865 CRNKL1Q9BZJ0 848 aaKnown RBP17.71■□□□□ 0.43
UPF3B-202ENST00000345865 MAN1B1Q9UKM7 699 aa17.71■□□□□ 0.43
UPF3B-202ENST00000345865 CNTNAP5Q8WYK1 1306 aa17.71■□□□□ 0.43
UPF3B-202ENST00000345865 TAF1LQ8IZX4 1826 aa17.71■□□□□ 0.43
UPF3B-202ENST00000345865 A0A087X0B3 334 aa17.71■□□□□ 0.43
UPF3B-202ENST00000345865 CTIFO43310 598 aaKnown RBP17.71■□□□□ 0.43
UPF3B-202ENST00000345865 SARSP49591 514 aaKnown RBP17.71■□□□□ 0.43
UPF3B-202ENST00000345865 TPM4P67936 248 aa17.71■□□□□ 0.43
UPF3B-202ENST00000345865 NYAP1Q6ZVC0 841 aa17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms