RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 FANCIQ9NVI1 1328 aa9.56□□□□□ -0.88
HMGB1-203ENST00000341423 C19orf81C9J6K1 198 aa9.56□□□□□ -0.88
HMGB1-203ENST00000341423 OATP04181 439 aa9.56□□□□□ -0.88
HMGB1-203ENST00000341423 FBLN1P23142 703 aa9.56□□□□□ -0.88
HMGB1-203ENST00000341423 GBP1P32455 592 aa9.56□□□□□ -0.88
HMGB1-203ENST00000341423 AMPD3Q01432 767 aa9.56□□□□□ -0.88
HMGB1-203ENST00000341423 NR1H3Q13133 447 aa9.56□□□□□ -0.88
HMGB1-203ENST00000341423 TRPC3Q13507 836 aa9.56□□□□□ -0.88
HMGB1-203ENST00000341423 PLEKHH3Q7Z736 793 aa9.56□□□□□ -0.88
HMGB1-203ENST00000341423 WDR63Q8IWG1 891 aa9.56□□□□□ -0.88
HMGB1-203ENST00000341423 TDRD3Q9H7E2 651 aaKnown RBP9.56□□□□□ -0.88
HMGB1-203ENST00000341423 MYOZ2Q9NPC6 264 aa9.56□□□□□ -0.88
HMGB1-203ENST00000341423 INPP5FQ9Y2H2 1132 aa9.56□□□□□ -0.88
HMGB1-203ENST00000341423 AMHP03971 560 aa9.55□□□□□ -0.88
HMGB1-203ENST00000341423 RSBN1LQ6PCB5 846 aaPredicted RBP9.55□□□□□ -0.88
HMGB1-203ENST00000341423 ZNF396Q96N95 335 aaPredicted RBP9.55□□□□□ -0.88
HMGB1-203ENST00000341423 PPP1R12CQ9BZL4 782 aa9.55□□□□□ -0.88
HMGB1-203ENST00000341423 CYP46A1Q9Y6A2 500 aa9.55□□□□□ -0.88
HMGB1-203ENST00000341423 SETD1BQ9UPS6 1966 aaKnown RBP9.55□□□□□ -0.88
HMGB1-203ENST00000341423 F6X3S4 739 aa9.55□□□□□ -0.88
HMGB1-203ENST00000341423 C12orf50Q8NA57 414 aaPredicted RBP9.55□□□□□ -0.88
HMGB1-203ENST00000341423 METTL22Q9BUU2 404 aaPredicted RBP9.55□□□□□ -0.88
HMGB1-203ENST00000341423 KIF9Q9HAQ2 790 aa9.55□□□□□ -0.88
HMGB1-203ENST00000341423 THOC2Q8NI27 1593 aaKnown RBP9.55□□□□□ -0.88
HMGB1-203ENST00000341423 SSRP1Q08945 709 aaKnown RBP9.55□□□□□ -0.88
HMGB1-203ENST00000341423 BTBD8Q5XKL5 378 aa9.55□□□□□ -0.88
HMGB1-203ENST00000341423 STAMQ92783 540 aa9.55□□□□□ -0.88
HMGB1-203ENST00000341423 DEFB129Q9H1M3 183 aa9.55□□□□□ -0.88
HMGB1-203ENST00000341423 CREBZFQ9NS37 354 aa9.55□□□□□ -0.88
HMGB1-203ENST00000341423 IPO11Q9UI26 975 aaKnown RBP9.55□□□□□ -0.88
HMGB1-203ENST00000341423 PPIGQ13427 754 aaKnown RBP eCLIP9.55□□□□□ -0.88
HMGB1-203ENST00000341423 PROCA1Q8NCQ7 364 aaPredicted RBP9.55□□□□□ -0.88
HMGB1-203ENST00000341423 AMNQ9BXJ7 453 aa9.55□□□□□ -0.88
HMGB1-203ENST00000341423 GMEB2Q9UKD1 530 aa9.55□□□□□ -0.88
HMGB1-203ENST00000341423 C1orf167Q5SNV9 1468 aa9.55□□□□□ -0.88
HMGB1-203ENST00000341423 EYA2O00167 538 aa9.55□□□□□ -0.88
HMGB1-203ENST00000341423 GJB1P08034 283 aa9.55□□□□□ -0.88
HMGB1-203ENST00000341423 FNBP1Q96RU3 617 aa9.55□□□□□ -0.88
HMGB1-203ENST00000341423 HAUS7Q99871 368 aa9.55□□□□□ -0.88
HMGB1-203ENST00000341423 TBC1D2Q9BYX2 928 aa9.55□□□□□ -0.88
HMGB1-203ENST00000341423 CCDC169A6NNP5 214 aa9.54□□□□□ -0.88
HMGB1-203ENST00000341423 GCOM1H8Y6P7 765 aaPredicted RBP9.54□□□□□ -0.88
HMGB1-203ENST00000341423 POLR2MP0CAP2 368 aa9.54□□□□□ -0.88
HMGB1-203ENST00000341423 CRKP46108 304 aa9.54□□□□□ -0.88
HMGB1-203ENST00000341423 GCKRQ14397 625 aa9.54□□□□□ -0.88
HMGB1-203ENST00000341423 FAM160B2Q86V87 743 aa9.54□□□□□ -0.88
HMGB1-203ENST00000341423 ZBTB38Q8NAP3 1195 aaPredicted RBP9.54□□□□□ -0.88
HMGB1-203ENST00000341423 SLAIN1Q8ND83 568 aa9.54□□□□□ -0.88
HMGB1-203ENST00000341423 PI4K2BG5E9Z4 385 aa9.54□□□□□ -0.88
HMGB1-203ENST00000341423 HOXA2O43364 376 aa9.54□□□□□ -0.88
HMGB1-203ENST00000341423 ANXA13P27216 316 aa9.54□□□□□ -0.88
HMGB1-203ENST00000341423 TNFAIP2Q03169 654 aa9.54□□□□□ -0.88
HMGB1-203ENST00000341423 FILIP1LQ4L180 1135 aa9.54□□□□□ -0.88
HMGB1-203ENST00000341423 GPATCH4Q5T3I0 446 aaKnown RBP9.54□□□□□ -0.88
HMGB1-203ENST00000341423 PI4K2BQ8TCG2 481 aa9.54□□□□□ -0.88
HMGB1-203ENST00000341423 KANSL2Q9H9L4 492 aa9.54□□□□□ -0.88
HMGB1-203ENST00000341423 FPGT-TNNI3KV9GXZ4 949 aa9.54□□□□□ -0.88
HMGB1-203ENST00000341423 FAM13AO94988 1023 aa9.54□□□□□ -0.88
HMGB1-203ENST00000341423 MAP4K4O95819 1239 aaPredicted RBP9.54□□□□□ -0.88
HMGB1-203ENST00000341423 DPYDQ12882 1025 aa9.54□□□□□ -0.88
HMGB1-203ENST00000341423 CEP57L1Q8IYX8 460 aa9.54□□□□□ -0.88
HMGB1-203ENST00000341423 DEPTORQ8TB45 409 aa9.54□□□□□ -0.88
HMGB1-203ENST00000341423 BABAM1Q9NWV8 329 aa9.54□□□□□ -0.88
HMGB1-203ENST00000341423 ERVK-7P63135 1459 aa9.54□□□□□ -0.88
HMGB1-203ENST00000341423 RIMS1Q86UR5 1692 aaKnown RBP9.54□□□□□ -0.88
HMGB1-203ENST00000341423 CARNS1A5YM72 827 aa9.54□□□□□ -0.88
HMGB1-203ENST00000341423 FDX1P10109 184 aa9.54□□□□□ -0.88
HMGB1-203ENST00000341423 SLFN13Q68D06 897 aa9.54□□□□□ -0.88
HMGB1-203ENST00000341423 SESTD1Q86VW0 696 aa9.54□□□□□ -0.88
HMGB1-203ENST00000341423 MKNK1Q9BUB5 465 aa9.54□□□□□ -0.88
HMGB1-203ENST00000341423 LNPKQ9C0E8 428 aa9.54□□□□□ -0.88
HMGB1-203ENST00000341423 FARP1Q9Y4F1 1045 aaPredicted RBP9.54□□□□□ -0.88
HMGB1-203ENST00000341423 MROH7Q68CQ1 1323 aa9.53□□□□□ -0.88
HMGB1-203ENST00000341423 DYNC1LI2O43237 492 aaPredicted RBP9.53□□□□□ -0.88
HMGB1-203ENST00000341423 HMGB1P09429 215 aaKnown RBP9.53□□□□□ -0.88
HMGB1-203ENST00000341423 RBM25P49756 843 aaKnown RBP9.53□□□□□ -0.88
HMGB1-203ENST00000341423 CHRNDQ07001 517 aa9.53□□□□□ -0.88
HMGB1-203ENST00000341423 ZBTB12Q9Y330 459 aaPredicted RBP9.53□□□□□ -0.88
HMGB1-203ENST00000341423 TMEM232C9JQI7 657 aa9.53□□□□□ -0.88
HMGB1-203ENST00000341423 P4HA1P13674 534 aa9.53□□□□□ -0.88
HMGB1-203ENST00000341423 USP8P40818 1118 aa9.53□□□□□ -0.88
HMGB1-203ENST00000341423 UBA7P41226 1012 aa9.53□□□□□ -0.88
HMGB1-203ENST00000341423 RECQLP46063 649 aaPredicted RBP9.53□□□□□ -0.88
HMGB1-203ENST00000341423 MRPS17Q9Y2R5 130 aaKnown RBP9.53□□□□□ -0.88
HMGB1-203ENST00000341423 EDC4Q6P2E9 1401 aaKnown RBP9.53□□□□□ -0.88
HMGB1-203ENST00000341423 SPATA31D1Q6ZQQ2 1576 aa9.53□□□□□ -0.88
HMGB1-203ENST00000341423 PSMD14O00487 310 aa9.53□□□□□ -0.88
HMGB1-203ENST00000341423 HOXB7P09629 217 aa9.53□□□□□ -0.88
HMGB1-203ENST00000341423 GPSM2P81274 684 aa9.53□□□□□ -0.88
HMGB1-203ENST00000341423 TTC22Q5TAA0 569 aa9.53□□□□□ -0.88
HMGB1-203ENST00000341423 TCERG1LQ5VWI1 586 aa9.53□□□□□ -0.88
HMGB1-203ENST00000341423 NCOA7Q8NI08 942 aa9.53□□□□□ -0.88
HMGB1-203ENST00000341423 ATP6V0A2Q9Y487 856 aa9.53□□□□□ -0.88
HMGB1-203ENST00000341423 METP08581 1390 aa9.53□□□□□ -0.88
HMGB1-203ENST00000341423 RGL2O15211 777 aa9.53□□□□□ -0.88
HMGB1-203ENST00000341423 FGFR1OPO95684 399 aaKnown RBP9.53□□□□□ -0.88
HMGB1-203ENST00000341423 MCTP2Q6DN12 878 aa9.53□□□□□ -0.88
HMGB1-203ENST00000341423 SHCBP1Q8NEM2 672 aa9.53□□□□□ -0.88
HMGB1-203ENST00000341423 ECHDC1Q9NTX5 307 aa9.53□□□□□ -0.88
HMGB1-203ENST00000341423 SLC25A27O95847 323 aa9.52□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms