RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 MAML3Q96JK9 1138 aa3.69□□□□□ -1.82
CSMD3-202ENST00000339701 VPS37BQ9H9H4 285 aa3.69□□□□□ -1.82
CSMD3-202ENST00000339701 CWC25Q9NXE8 425 aaPredicted RBP3.69□□□□□ -1.82
CSMD3-202ENST00000339701 H7C0S8 307 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 RIOK3O14730 519 aaKnown RBP3.68□□□□□ -1.82
CSMD3-202ENST00000339701 PPP2R1AP30153 589 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 KIF11P52732 1056 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 SLC9C1Q4G0N8 1177 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 VWA3BQ502W6 1294 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 KIAA1551Q9HCM1 1747 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 CARNS1A5YM72 827 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 SPECC1L-ADORA2AF8WAN1 911 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 APAF1O14727 1248 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 CALM1P0DP23 149 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 CALM2P0DP24 149 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 CALM3P0DP25 149 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 PDE4AP27815 886 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 PTPN14Q15678 1187 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 TMEM266Q2M3C6 531 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 LARP1Q6PKG0 1096 aaKnown RBP3.68□□□□□ -1.82
CSMD3-202ENST00000339701 NEK11Q8NG66 645 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 IQCGQ9H095 443 aaKnown RBP3.68□□□□□ -1.82
CSMD3-202ENST00000339701 FAM96AQ9H5X1 160 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 NPHP4O75161 1426 aaPredicted RBP3.68□□□□□ -1.82
CSMD3-202ENST00000339701 CRYBG1Q9Y4K1 1723 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 GOLGA8CPA6NN73 597 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 GOLGA8MH3BSY2 632 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 RRP1P56182 461 aaKnown RBP3.68□□□□□ -1.82
CSMD3-202ENST00000339701 KRT222Q8N1A0 295 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 FNBP4Q8N3X1 1017 aaPredicted RBP3.68□□□□□ -1.82
CSMD3-202ENST00000339701 PARP2Q9UGN5 583 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 FBXO3Q9UK99 471 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 PARD3Q8TEW0 1356 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 ZBBXA8MT70 800 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 DKC1O60832 514 aaKnown RBP eCLIP3.68□□□□□ -1.82
CSMD3-202ENST00000339701 SLIT3O75094 1523 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 PSMD7P51665 324 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 ALDH1L2Q3SY69 923 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 CFAP100Q494V2 611 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 HDGFL1Q5TGJ6 251 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 CCAR2Q8N163 923 aaKnown RBP3.68□□□□□ -1.82
CSMD3-202ENST00000339701 POP5Q969H6 163 aaKnown RBP3.68□□□□□ -1.82
CSMD3-202ENST00000339701 GOPCQ9HD26 462 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 HACD3Q9P035 362 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 GGA1Q9UJY5 639 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 CYP46A1Q9Y6A2 500 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 SSH2Q76I76 1423 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 TMC4Q7Z404 712 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 APOBEC3FQ8IUX4 373 aaKnown RBP3.68□□□□□ -1.82
CSMD3-202ENST00000339701 PIDD1Q9HB75 910 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 HCN4Q9Y3Q4 1203 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 RP1L1Q8IWN7 2480 aaPredicted RBP3.68□□□□□ -1.82
CSMD3-202ENST00000339701 DZIP3Q86Y13 1208 aaKnown RBP3.68□□□□□ -1.82
CSMD3-202ENST00000339701 LMNTD2Q8IXW0 634 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 PPP1R9BQ96SB3 815 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 TUBB6Q9BUF5 446 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 MTUS1Q9ULD2 1270 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 ABCC12Q96J65 1359 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 CCDC160A6NGH7 325 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 KRT86O43790 486 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 NUCB1Q02818 461 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 IFFO1Q0D2I5 559 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 SETDB1Q15047 1291 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 E2F5Q15329 346 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 SYMPKQ92797 1274 aaKnown RBP3.68□□□□□ -1.82
CSMD3-202ENST00000339701 TRIM7Q9C029 511 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 MYH2Q9UKX2 1941 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 DDX5P17844 614 aaKnown RBP3.68□□□□□ -1.82
CSMD3-202ENST00000339701 SLC8A1P32418 973 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 PTGDRQ13258 359 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 MUM1L1Q5H9M0 696 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 CD2APQ9Y5K6 639 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 RFX7Q2KHR2 1363 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 EIF3CLB5ME19 914 aaKnown RBP3.68□□□□□ -1.82
CSMD3-202ENST00000339701 RIMBP2O15034 1052 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 ACTN4O43707 911 aaKnown RBP3.68□□□□□ -1.82
CSMD3-202ENST00000339701 KIAA1841Q6NSI8 718 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 ARHGAP30Q7Z6I6 1101 aaPredicted RBP3.68□□□□□ -1.82
CSMD3-202ENST00000339701 ATP2A3Q93084 1043 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 TEKT1Q969V4 418 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 EIF3CQ99613 913 aaKnown RBP3.68□□□□□ -1.82
CSMD3-202ENST00000339701 SEPT10Q9P0V9 454 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 MSRAQ9UJ68 235 aa3.68□□□□□ -1.82
CSMD3-202ENST00000339701 LAMB1P07942 1786 aa3.67□□□□□ -1.82
CSMD3-202ENST00000339701 DLG5Q8TDM6 1919 aa3.67□□□□□ -1.82
CSMD3-202ENST00000339701 PFDN6O15212 129 aa3.67□□□□□ -1.82
CSMD3-202ENST00000339701 LMNB1P20700 586 aa3.67□□□□□ -1.82
CSMD3-202ENST00000339701 CYLC1P35663 651 aaPredicted RBP3.67□□□□□ -1.82
CSMD3-202ENST00000339701 VAV2P52735 878 aa3.67□□□□□ -1.82
CSMD3-202ENST00000339701 ATXN3P54252 364 aaPredicted RBP3.67□□□□□ -1.82
CSMD3-202ENST00000339701 RASSF7Q02833 373 aa3.67□□□□□ -1.82
CSMD3-202ENST00000339701 TEX11Q8IYF3 940 aa3.67□□□□□ -1.82
CSMD3-202ENST00000339701 ERO1AQ96HE7 468 aa3.67□□□□□ -1.82
CSMD3-202ENST00000339701 MYCBPQ99417 103 aaPredicted RBP3.67□□□□□ -1.82
CSMD3-202ENST00000339701 CCDC68Q9H2F9 335 aa3.67□□□□□ -1.82
CSMD3-202ENST00000339701 MTRF1LQ9UGC7 380 aaKnown RBP3.67□□□□□ -1.82
CSMD3-202ENST00000339701 TMEM2Q9UHN6 1383 aa3.67□□□□□ -1.82
CSMD3-202ENST00000339701 GOLGA8IPA6NC78 632 aa3.67□□□□□ -1.82
CSMD3-202ENST00000339701 GAS8O95995 478 aa3.67□□□□□ -1.82
CSMD3-202ENST00000339701 PSMA3P25788 255 aa3.67□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms