RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 TAOK3Q9H2K8 898 aa4.86□□□□□ -1.63
MCF2-201ENST00000338585 FAM217BQ9NTX9 383 aaPredicted RBP4.86□□□□□ -1.63
MCF2-201ENST00000338585 METRNQ9UJH8 293 aa4.86□□□□□ -1.63
MCF2-201ENST00000338585 WDR33Q9C0J8 1336 aaKnown RBP4.86□□□□□ -1.63
MCF2-201ENST00000338585 ROBO3Q96MS0 1386 aa4.85□□□□□ -1.63
MCF2-201ENST00000338585 FOCADQ5VW36 1801 aa4.85□□□□□ -1.63
MCF2-201ENST00000338585 FER1L6Q2WGJ9 1857 aa4.85□□□□□ -1.63
MCF2-201ENST00000338585 CCDC69A6NI79 296 aa4.85□□□□□ -1.63
MCF2-201ENST00000338585 UBE2Q2LH0YL09 131 aa4.85□□□□□ -1.63
MCF2-201ENST00000338585 ZBTB43O43298 467 aa4.85□□□□□ -1.63
MCF2-201ENST00000338585 ZSCAN22P10073 491 aaPredicted RBP4.85□□□□□ -1.63
MCF2-201ENST00000338585 FDPSP14324 419 aaKnown RBP4.85□□□□□ -1.63
MCF2-201ENST00000338585 LIFRP42702 1097 aa4.85□□□□□ -1.63
MCF2-201ENST00000338585 METAP2P50579 478 aaKnown RBP eCLIP4.85□□□□□ -1.63
MCF2-201ENST00000338585 SOGA3Q5TF21 947 aa4.85□□□□□ -1.63
MCF2-201ENST00000338585 MCTP1Q6DN14 999 aa4.85□□□□□ -1.63
MCF2-201ENST00000338585 CLEC17AQ6ZS10 378 aa4.85□□□□□ -1.63
MCF2-201ENST00000338585 FERMT3Q86UX7 667 aa4.85□□□□□ -1.63
MCF2-201ENST00000338585 CERS3Q8IU89 383 aa4.85□□□□□ -1.63
MCF2-201ENST00000338585 NIM1KQ8IY84 436 aa4.85□□□□□ -1.63
MCF2-201ENST00000338585 GBP4Q96PP9 640 aa4.85□□□□□ -1.63
MCF2-201ENST00000338585 LLPHQ9BRT6 129 aaKnown RBP4.85□□□□□ -1.63
MCF2-201ENST00000338585 SLC12A7Q9Y666 1083 aa4.85□□□□□ -1.63
MCF2-201ENST00000338585 MYH1P12882 1939 aa4.85□□□□□ -1.63
MCF2-201ENST00000338585 SHTN1A0MZ66 631 aa4.85□□□□□ -1.63
MCF2-201ENST00000338585 ERICH2A1L162 156 aa4.85□□□□□ -1.63
MCF2-201ENST00000338585 TSPY2A6NKD2 308 aa4.85□□□□□ -1.63
MCF2-201ENST00000338585 GOLGA8AA7E2F4 631 aa4.85□□□□□ -1.63
MCF2-201ENST00000338585 F13A1P00488 732 aa4.85□□□□□ -1.63
MCF2-201ENST00000338585 SLC3A2P08195 630 aaKnown RBP4.85□□□□□ -1.63
MCF2-201ENST00000338585 VIL1P09327 827 aaKnown RBP4.85□□□□□ -1.63
MCF2-201ENST00000338585 PCP11498 1178 aaKnown RBP4.85□□□□□ -1.63
MCF2-201ENST00000338585 RASA1P20936 1047 aa4.85□□□□□ -1.63
MCF2-201ENST00000338585 TFAP4Q01664 338 aa4.85□□□□□ -1.63
MCF2-201ENST00000338585 CXCL9Q07325 125 aa4.85□□□□□ -1.63
MCF2-201ENST00000338585 PDE4BQ07343 736 aa4.85□□□□□ -1.63
MCF2-201ENST00000338585 TCP10Q12799 353 aa4.85□□□□□ -1.63
MCF2-201ENST00000338585 SART3Q15020 963 aaKnown RBP4.85□□□□□ -1.63
MCF2-201ENST00000338585 CFAP100Q494V2 611 aa4.85□□□□□ -1.63
MCF2-201ENST00000338585 FAM173BQ6P4H8 233 aa4.85□□□□□ -1.63
MCF2-201ENST00000338585 RSBN1LQ6PCB5 846 aaPredicted RBP4.85□□□□□ -1.63
MCF2-201ENST00000338585 CMTR1Q8N1G2 835 aaKnown RBP4.85□□□□□ -1.63
MCF2-201ENST00000338585 PRMT6Q96LA8 375 aaPredicted RBP4.85□□□□□ -1.63
MCF2-201ENST00000338585 AIFM3Q96NN9 605 aa4.85□□□□□ -1.63
MCF2-201ENST00000338585 GMLQ99445 158 aa4.85□□□□□ -1.63
MCF2-201ENST00000338585 TDRD3Q9H7E2 651 aaKnown RBP4.85□□□□□ -1.63
MCF2-201ENST00000338585 MKNK2Q9HBH9 465 aa4.85□□□□□ -1.63
MCF2-201ENST00000338585 IL17RBQ9NRM6 502 aa4.85□□□□□ -1.63
MCF2-201ENST00000338585 GJB4Q9NTQ9 266 aa4.85□□□□□ -1.63
MCF2-201ENST00000338585 SERPINA10Q9UK55 444 aa4.85□□□□□ -1.63
MCF2-201ENST00000338585 ZNRF3Q9ULT6 936 aa4.85□□□□□ -1.63
MCF2-201ENST00000338585 PSME4Q14997 1843 aa4.85□□□□□ -1.63
MCF2-201ENST00000338585 CPLX1O14810 134 aa4.84□□□□□ -1.63
MCF2-201ENST00000338585 CDK8P49336 464 aa4.84□□□□□ -1.63
MCF2-201ENST00000338585 GUCY1B3Q02153 619 aa4.84□□□□□ -1.63
MCF2-201ENST00000338585 OTUD7BQ6GQQ9 843 aa4.84□□□□□ -1.63
MCF2-201ENST00000338585 RCSD1Q6JBY9 416 aa4.84□□□□□ -1.63
MCF2-201ENST00000338585 C16orf86Q6ZW13 317 aa4.84□□□□□ -1.63
MCF2-201ENST00000338585 IQCA1Q86XH1 822 aa4.84□□□□□ -1.63
MCF2-201ENST00000338585 AMOTL1Q8IY63 956 aa4.84□□□□□ -1.63
MCF2-201ENST00000338585 ZNF654Q8IZM8 581 aa4.84□□□□□ -1.63
MCF2-201ENST00000338585 FAM184AQ8NB25 1140 aa4.84□□□□□ -1.63
MCF2-201ENST00000338585 NUP133Q8WUM0 1156 aa4.84□□□□□ -1.63
MCF2-201ENST00000338585 PHKBQ93100 1093 aa4.84□□□□□ -1.63
MCF2-201ENST00000338585 CHMP4CQ96CF2 233 aa4.84□□□□□ -1.63
MCF2-201ENST00000338585 OSBPL5Q9H0X9 879 aaPredicted RBP4.84□□□□□ -1.63
MCF2-201ENST00000338585 SPON1Q9HCB6 807 aa4.84□□□□□ -1.63
MCF2-201ENST00000338585 GDPD2Q9HCC8 539 aa4.84□□□□□ -1.63
MCF2-201ENST00000338585 FAM198AQ9UFP1 575 aa4.84□□□□□ -1.63
MCF2-201ENST00000338585 ECM29Q5VYK3 1845 aa4.84□□□□□ -1.63
MCF2-201ENST00000338585 DDTLA6NHG4 134 aaPredicted RBP4.84□□□□□ -1.63
MCF2-201ENST00000338585 FAM196BA6NMK8 535 aa4.84□□□□□ -1.63
MCF2-201ENST00000338585 GALR2O43603 387 aaPredicted RBP4.84□□□□□ -1.63
MCF2-201ENST00000338585 PDCP20941 246 aa4.84□□□□□ -1.63
MCF2-201ENST00000338585 HDLBPQ00341 1268 aaKnown RBP4.84□□□□□ -1.63
MCF2-201ENST00000338585 NTRK3Q16288 839 aa4.84□□□□□ -1.63
MCF2-201ENST00000338585 IFIT1BQ5T764 474 aaKnown RBP4.84□□□□□ -1.63
MCF2-201ENST00000338585 SH3BP5LQ7L8J4 393 aa4.84□□□□□ -1.63
MCF2-201ENST00000338585 CCDC82Q8N4S0 544 aa4.84□□□□□ -1.63
MCF2-201ENST00000338585 MTA3Q9BTC8 594 aa4.84□□□□□ -1.63
MCF2-201ENST00000338585 MRIQ9BWK5 157 aa4.84□□□□□ -1.63
MCF2-201ENST00000338585 FHDC1Q9C0D6 1143 aaPredicted RBP4.84□□□□□ -1.63
MCF2-201ENST00000338585 ORC3Q9UBD5 711 aaPredicted RBP4.84□□□□□ -1.63
MCF2-201ENST00000338585 CLRN2A0PK11 232 aa4.83□□□□□ -1.64
MCF2-201ENST00000338585 DDX11L8A8MPP1 907 aa4.83□□□□□ -1.64
MCF2-201ENST00000338585 DHX16O60231 1041 aaKnown RBP4.83□□□□□ -1.64
MCF2-201ENST00000338585 TSPY3P0CV98 308 aa4.83□□□□□ -1.64
MCF2-201ENST00000338585 TSPY8P0CW00 308 aa4.83□□□□□ -1.64
MCF2-201ENST00000338585 HMGN5P82970 282 aaKnown RBP4.83□□□□□ -1.64
MCF2-201ENST00000338585 GABPAQ06546 454 aa4.83□□□□□ -1.64
MCF2-201ENST00000338585 RTN1Q16799 776 aa4.83□□□□□ -1.64
MCF2-201ENST00000338585 SYNE3Q6ZMZ3 975 aa4.83□□□□□ -1.64
MCF2-201ENST00000338585 RASGRP2Q7LDG7 609 aa4.83□□□□□ -1.64
MCF2-201ENST00000338585 CLEC10AQ8IUN9 316 aa4.83□□□□□ -1.64
MCF2-201ENST00000338585 ZNF444Q8N0Y2 327 aaPredicted RBP4.83□□□□□ -1.64
MCF2-201ENST00000338585 FANCBQ8NB91 859 aa4.83□□□□□ -1.64
MCF2-201ENST00000338585 JDP2Q8WYK2 163 aa4.83□□□□□ -1.64
MCF2-201ENST00000338585 VPS33BQ9H267 617 aa4.83□□□□□ -1.64
MCF2-201ENST00000338585 CNPY2Q9Y2B0 182 aa4.83□□□□□ -1.64
MCF2-201ENST00000338585 NID2Q14112 1375 aa4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 82.3 ms