RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 HELLSQ9NRZ9 838 aa16.79■□□□□ 0.28
LIMS1-201ENST00000332345 SWAP70Q9UH65 585 aa16.79■□□□□ 0.28
LIMS1-201ENST00000332345 NAV1Q8NEY1 1877 aa16.79■□□□□ 0.28
LIMS1-201ENST00000332345 SIPA1L1O43166 1804 aa16.79■□□□□ 0.28
LIMS1-201ENST00000332345 CASP8AP2Q9UKL3 1982 aa16.78■□□□□ 0.28
LIMS1-201ENST00000332345 GABPAQ06546 454 aa16.78■□□□□ 0.28
LIMS1-201ENST00000332345 COL13A1Q5TAT6 717 aaPredicted RBP16.78■□□□□ 0.28
LIMS1-201ENST00000332345 CTR9Q6PD62 1173 aa16.78■□□□□ 0.28
LIMS1-201ENST00000332345 CENPQQ7L2Z9 268 aaPredicted RBP16.78■□□□□ 0.28
LIMS1-201ENST00000332345 ZNF280CQ8ND82 737 aa16.78■□□□□ 0.28
LIMS1-201ENST00000332345 SEC62Q99442 399 aaKnown RBP16.78■□□□□ 0.28
LIMS1-201ENST00000332345 CABP5Q9NP86 173 aa16.78■□□□□ 0.28
LIMS1-201ENST00000332345 ARPP21Q9UBL0 812 aaPredicted RBP16.78■□□□□ 0.28
LIMS1-201ENST00000332345 TRIM75PA6NK02 468 aa16.77■□□□□ 0.28
LIMS1-201ENST00000332345 BTBD19C9JJ37 291 aa16.77■□□□□ 0.28
LIMS1-201ENST00000332345 GDF11O95390 407 aa16.77■□□□□ 0.28
LIMS1-201ENST00000332345 CYP2D6P10635 497 aa16.77■□□□□ 0.28
LIMS1-201ENST00000332345 PDE4AP27815 886 aa16.77■□□□□ 0.28
LIMS1-201ENST00000332345 SPP2Q13103 211 aa16.77■□□□□ 0.28
LIMS1-201ENST00000332345 ABCB5Q2M3G0 1257 aa16.77■□□□□ 0.28
LIMS1-201ENST00000332345 MCMDC2Q4G0Z9 681 aa16.77■□□□□ 0.28
LIMS1-201ENST00000332345 SBK1Q52WX2 424 aa16.77■□□□□ 0.28
LIMS1-201ENST00000332345 NOM1Q5C9Z4 860 aaKnown RBP16.77■□□□□ 0.28
LIMS1-201ENST00000332345 WDR18Q9BV38 432 aa16.77■□□□□ 0.28
LIMS1-201ENST00000332345 ZFYVE28Q9HCC9 887 aa16.77■□□□□ 0.28
LIMS1-201ENST00000332345 ATAD5Q96QE3 1844 aa16.77■□□□□ 0.27
LIMS1-201ENST00000332345 A0A0G2JLL6 359 aaPredicted RBP16.76■□□□□ 0.27
LIMS1-201ENST00000332345 GPR25O00155 361 aa16.76■□□□□ 0.27
LIMS1-201ENST00000332345 HIP1O00291 1037 aa16.76■□□□□ 0.27
LIMS1-201ENST00000332345 GH2P01242 217 aa16.76■□□□□ 0.27
LIMS1-201ENST00000332345 SDSP20132 328 aa16.76■□□□□ 0.27
LIMS1-201ENST00000332345 SHMT1P34896 483 aa16.76■□□□□ 0.27
LIMS1-201ENST00000332345 TDO2P48775 406 aa16.76■□□□□ 0.27
LIMS1-201ENST00000332345 TAF1CQ15572 869 aaPredicted RBP16.76■□□□□ 0.27
LIMS1-201ENST00000332345 PRRT2Q7Z6L0 340 aaPredicted RBP16.76■□□□□ 0.27
LIMS1-201ENST00000332345 ANKRD23Q86SG2 305 aa16.76■□□□□ 0.27
LIMS1-201ENST00000332345 IFNL3Q8IZI9 196 aa16.76■□□□□ 0.27
LIMS1-201ENST00000332345 FAM43AQ8N2R8 423 aa16.76■□□□□ 0.27
LIMS1-201ENST00000332345 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.76■□□□□ 0.27
LIMS1-201ENST00000332345 ZBTB21Q9ULJ3 1066 aa16.76■□□□□ 0.27
LIMS1-201ENST00000332345 PHIPQ8WWQ0 1821 aa16.75■□□□□ 0.27
LIMS1-201ENST00000332345 MINDY4BA8MYZ0 360 aa16.75■□□□□ 0.27
LIMS1-201ENST00000332345 JAG1P78504 1218 aa16.75■□□□□ 0.27
LIMS1-201ENST00000332345 CRHR2Q13324 411 aa16.75■□□□□ 0.27
LIMS1-201ENST00000332345 GADL1Q6ZQY3 521 aa16.75■□□□□ 0.27
LIMS1-201ENST00000332345 CCDC84Q86UT8 332 aaPredicted RBP16.75■□□□□ 0.27
LIMS1-201ENST00000332345 CCDC136Q96JN2 1154 aa16.75■□□□□ 0.27
LIMS1-201ENST00000332345 DDX60LQ5H9U9 1706 aaKnown RBP16.74■□□□□ 0.27
LIMS1-201ENST00000332345 CYP2D7A0A087X1C5 515 aa16.74■□□□□ 0.27
LIMS1-201ENST00000332345 C19orf81C9J6K1 198 aa16.74■□□□□ 0.27
LIMS1-201ENST00000332345 PDHXO00330 501 aa16.74■□□□□ 0.27
LIMS1-201ENST00000332345 CDK8P49336 464 aa16.74■□□□□ 0.27
LIMS1-201ENST00000332345 MFAP1P55081 439 aaKnown RBP16.74■□□□□ 0.27
LIMS1-201ENST00000332345 MOGSQ13724 837 aa16.74■□□□□ 0.27
LIMS1-201ENST00000332345 RAB3GAP1Q15042 981 aa16.74■□□□□ 0.27
LIMS1-201ENST00000332345 TTC22Q5TAA0 569 aa16.74■□□□□ 0.27
LIMS1-201ENST00000332345 C16orf86Q6ZW13 317 aa16.74■□□□□ 0.27
LIMS1-201ENST00000332345 DYNLL2Q96FJ2 89 aa16.74■□□□□ 0.27
LIMS1-201ENST00000332345 CCDC17Q96LX7 622 aa16.74■□□□□ 0.27
LIMS1-201ENST00000332345 FAM227BQ96M60 508 aa16.74■□□□□ 0.27
LIMS1-201ENST00000332345 NAPBQ9H115 298 aa16.74■□□□□ 0.27
LIMS1-201ENST00000332345 R3HDMLQ9H3Y0 253 aa16.74■□□□□ 0.27
LIMS1-201ENST00000332345 ZNF287Q9HBT7 754 aa16.74■□□□□ 0.27
LIMS1-201ENST00000332345 USP17L10C9JJH3 530 aa16.73■□□□□ 0.27
LIMS1-201ENST00000332345 MPHOSPH10O00566 681 aaKnown RBP16.73■□□□□ 0.27
LIMS1-201ENST00000332345 FKTNO75072 461 aa16.73■□□□□ 0.27
LIMS1-201ENST00000332345 BACE1P56817 501 aa16.73■□□□□ 0.27
LIMS1-201ENST00000332345 EVX2Q03828 476 aa16.73■□□□□ 0.27
LIMS1-201ENST00000332345 NMIQ13287 307 aaPredicted RBP16.73■□□□□ 0.27
LIMS1-201ENST00000332345 CCDC129Q6ZRS4 1044 aa16.73■□□□□ 0.27
LIMS1-201ENST00000332345 PROCA1Q8NCQ7 364 aaPredicted RBP16.73■□□□□ 0.27
LIMS1-201ENST00000332345 ZNF296Q8WUU4 475 aaPredicted RBP16.73■□□□□ 0.27
LIMS1-201ENST00000332345 MKNK2Q9HBH9 465 aa16.73■□□□□ 0.27
LIMS1-201ENST00000332345 DIAPH3Q9NSV4 1193 aa16.73■□□□□ 0.27
LIMS1-201ENST00000332345 TMOD4Q9NZQ9 345 aa16.73■□□□□ 0.27
LIMS1-201ENST00000332345 SLC45A1Q9Y2W3 748 aa16.73■□□□□ 0.27
LIMS1-201ENST00000332345 MYH8P13535 1937 aa16.72■□□□□ 0.27
LIMS1-201ENST00000332345 A0A0D9SFI3 127 aa16.72■□□□□ 0.27
LIMS1-201ENST00000332345 TLR2O60603 784 aa16.72■□□□□ 0.27
LIMS1-201ENST00000332345 SLC3A2P08195 630 aaKnown RBP16.72■□□□□ 0.27
LIMS1-201ENST00000332345 HMGCS2P54868 508 aa16.72■□□□□ 0.27
LIMS1-201ENST00000332345 PABPC4Q13310 644 aaKnown RBP eCLIP16.72■□□□□ 0.27
LIMS1-201ENST00000332345 SH3D19Q5HYK7 790 aa16.72■□□□□ 0.27
LIMS1-201ENST00000332345 GPAT2Q6NUI2 795 aa16.72■□□□□ 0.27
LIMS1-201ENST00000332345 TMEM179Q6ZVK1 233 aa16.72■□□□□ 0.27
LIMS1-201ENST00000332345 SLC44A5Q8NCS7 719 aa16.72■□□□□ 0.27
LIMS1-201ENST00000332345 EPB41L4AQ9HCS5 686 aaPredicted RBP16.72■□□□□ 0.27
LIMS1-201ENST00000332345 PTPRFP10586 1907 aa16.72■□□□□ 0.27
LIMS1-201ENST00000332345 ALX1Q15699 326 aa16.71■□□□□ 0.27
LIMS1-201ENST00000332345 SHROOM1Q2M3G4 852 aaPredicted RBP16.71■□□□□ 0.27
LIMS1-201ENST00000332345 ERICH6BQ5W0A0 696 aa16.71■□□□□ 0.27
LIMS1-201ENST00000332345 CWC27Q6UX04 472 aaKnown RBP16.71■□□□□ 0.27
LIMS1-201ENST00000332345 TNS4Q8IZW8 715 aa16.71■□□□□ 0.27
LIMS1-201ENST00000332345 AGTPBP1Q9UPW5 1226 aa16.71■□□□□ 0.27
LIMS1-201ENST00000332345 SMIM22K7EJ46 135 aa16.7■□□□□ 0.26
LIMS1-201ENST00000332345 USP14P54578 494 aa16.7■□□□□ 0.26
LIMS1-201ENST00000332345 SP3Q02447 781 aa16.7■□□□□ 0.26
LIMS1-201ENST00000332345 MTMR2Q13614 643 aa16.7■□□□□ 0.26
LIMS1-201ENST00000332345 SEPT2Q15019 361 aa16.7■□□□□ 0.26
LIMS1-201ENST00000332345 USP17L2Q6R6M4 530 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms