RNA–Protein interactions for RNA: ENST00000324554.9

USHBP1-202, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 2,402 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-202ENST00000324554 SF3B3Q15393 1217 aaKnown RBP18.49■□□□□ 0.55
USHBP1-202ENST00000324554 BTBD18B2RXH4 712 aa18.48■□□□□ 0.55
USHBP1-202ENST00000324554 UTP14CQ5TAP6 766 aaKnown RBP18.48■□□□□ 0.55
USHBP1-202ENST00000324554 ADGRA1Q86SQ6 560 aa18.48■□□□□ 0.55
USHBP1-202ENST00000324554 STK11IPQ8N1F8 1099 aa18.48■□□□□ 0.55
USHBP1-202ENST00000324554 CCDC150Q8NCX0 1101 aa18.48■□□□□ 0.55
USHBP1-202ENST00000324554 KIF18AQ8NI77 898 aa18.48■□□□□ 0.55
USHBP1-202ENST00000324554 NYXQ9GZU5 481 aa18.48■□□□□ 0.55
USHBP1-202ENST00000324554 SCN7AQ01118 1682 aa18.48■□□□□ 0.55
USHBP1-202ENST00000324554 GYG1P46976 350 aa18.48■□□□□ 0.55
USHBP1-202ENST00000324554 FANCCQ00597 558 aa18.48■□□□□ 0.55
USHBP1-202ENST00000324554 TXNRD1Q16881 649 aa18.48■□□□□ 0.55
USHBP1-202ENST00000324554 DIS3L2Q8IYB7 885 aaKnown RBP18.48■□□□□ 0.55
USHBP1-202ENST00000324554 TRIM22Q8IYM9 498 aa18.48■□□□□ 0.55
USHBP1-202ENST00000324554 PPP1R13BQ96KQ4 1090 aa18.48■□□□□ 0.55
USHBP1-202ENST00000324554 MTA3Q9BTC8 594 aa18.48■□□□□ 0.55
USHBP1-202ENST00000324554 ERICH2A1L162 156 aa18.47■□□□□ 0.55
USHBP1-202ENST00000324554 SFPQP23246 707 aaKnown RBP eCLIP18.47■□□□□ 0.55
USHBP1-202ENST00000324554 METTL16Q86W50 562 aaKnown RBP18.47■□□□□ 0.55
USHBP1-202ENST00000324554 KCNJ14Q9UNX9 436 aa18.47■□□□□ 0.55
USHBP1-202ENST00000324554 TOB1P50616 345 aaPredicted RBP18.47■□□□□ 0.55
USHBP1-202ENST00000324554 PPARAQ07869 468 aa18.47■□□□□ 0.55
USHBP1-202ENST00000324554 LONRF3Q496Y0 759 aa18.47■□□□□ 0.55
USHBP1-202ENST00000324554 RNF41Q9H4P4 317 aaPredicted RBP18.47■□□□□ 0.55
USHBP1-202ENST00000324554 OGFRQ9NZT2 677 aa18.47■□□□□ 0.55
USHBP1-202ENST00000324554 KCNH3Q9ULD8 1083 aa18.47■□□□□ 0.55
USHBP1-202ENST00000324554 MINPP1Q9UNW1 487 aa18.47■□□□□ 0.55
USHBP1-202ENST00000324554 CYP7A1P22680 504 aa18.46■□□□□ 0.55
USHBP1-202ENST00000324554 SAFBQ15424 915 aaKnown RBP eCLIP18.46■□□□□ 0.55
USHBP1-202ENST00000324554 SLC10A5Q5PT55 438 aa18.46■□□□□ 0.55
USHBP1-202ENST00000324554 CMTR1Q8N1G2 835 aaKnown RBP18.46■□□□□ 0.55
USHBP1-202ENST00000324554 CRACR2BQ8N4Y2 399 aaPredicted RBP18.46■□□□□ 0.55
USHBP1-202ENST00000324554 KRI1Q8N9T8 703 aaKnown RBP18.46■□□□□ 0.55
USHBP1-202ENST00000324554 SDR42E1Q8WUS8 393 aa18.46■□□□□ 0.55
USHBP1-202ENST00000324554 DPF2Q92785 391 aa18.46■□□□□ 0.55
USHBP1-202ENST00000324554 ZNF804BA4D1E1 1349 aa18.46■□□□□ 0.55
USHBP1-202ENST00000324554 DEXIO95424 95 aa18.45■□□□□ 0.54
USHBP1-202ENST00000324554 APBA3O96018 575 aa18.45■□□□□ 0.54
USHBP1-202ENST00000324554 RCAN1P53805 252 aa18.45■□□□□ 0.54
USHBP1-202ENST00000324554 ZNF772Q68DY9 489 aaPredicted RBP18.45■□□□□ 0.54
USHBP1-202ENST00000324554 KRBA2Q6ZNG9 492 aa18.45■□□□□ 0.54
USHBP1-202ENST00000324554 TMTC2Q8N394 836 aa18.45■□□□□ 0.54
USHBP1-202ENST00000324554 CCDC82Q8N4S0 544 aa18.45■□□□□ 0.54
USHBP1-202ENST00000324554 FOXP1Q9H334 677 aaPredicted RBP18.45■□□□□ 0.54
USHBP1-202ENST00000324554 ZHX1Q9UKY1 873 aaPredicted RBP18.45■□□□□ 0.54
USHBP1-202ENST00000324554 GYS1P13807 737 aa18.45■□□□□ 0.54
USHBP1-202ENST00000324554 KLRK1P26718 216 aa18.45■□□□□ 0.54
USHBP1-202ENST00000324554 KMT5BQ4FZB7 885 aa18.45■□□□□ 0.54
USHBP1-202ENST00000324554 ZNF654Q8IZM8 581 aa18.45■□□□□ 0.54
USHBP1-202ENST00000324554 CNNM3Q8NE01 707 aa18.45■□□□□ 0.54
USHBP1-202ENST00000324554 ABCF2Q9UG63 623 aa18.45■□□□□ 0.54
USHBP1-202ENST00000324554 DDX41Q9UJV9 622 aaKnown RBP18.45■□□□□ 0.54
USHBP1-202ENST00000324554 CCDC196A0A1B0GTZ2 297 aa18.44■□□□□ 0.54
USHBP1-202ENST00000324554 RPS8P62241 208 aaKnown RBP18.44■□□□□ 0.54
USHBP1-202ENST00000324554 ELF2Q15723 593 aa18.44■□□□□ 0.54
USHBP1-202ENST00000324554 FOXP4Q8IVH2 680 aaPredicted RBP18.44■□□□□ 0.54
USHBP1-202ENST00000324554 FANCBQ8NB91 859 aa18.44■□□□□ 0.54
USHBP1-202ENST00000324554 ERO1AQ96HE7 468 aa18.44■□□□□ 0.54
USHBP1-202ENST00000324554 BSDC1Q9NW68 430 aaPredicted RBP18.44■□□□□ 0.54
USHBP1-202ENST00000324554 PSDA5PKW4 1024 aaPredicted RBP18.44■□□□□ 0.54
USHBP1-202ENST00000324554 MYL5Q02045 173 aa18.44■□□□□ 0.54
USHBP1-202ENST00000324554 NUP133Q8WUM0 1156 aa18.44■□□□□ 0.54
USHBP1-202ENST00000324554 UBAC1Q9BSL1 405 aa18.44■□□□□ 0.54
USHBP1-202ENST00000324554 COL1A1P02452 1464 aaPredicted RBP18.44■□□□□ 0.54
USHBP1-202ENST00000324554 CASZ1Q86V15 1759 aa18.43■□□□□ 0.54
USHBP1-202ENST00000324554 MINDY4BA8MYZ0 360 aa18.43■□□□□ 0.54
USHBP1-202ENST00000324554 KIF2AO00139 706 aaPredicted RBP18.43■□□□□ 0.54
USHBP1-202ENST00000324554 SLU7O95391 586 aaKnown RBP18.43■□□□□ 0.54
USHBP1-202ENST00000324554 NR5A1Q13285 461 aa18.43■□□□□ 0.54
USHBP1-202ENST00000324554 RILPL1Q5EBL4 403 aa18.43■□□□□ 0.54
USHBP1-202ENST00000324554 SPECC1Q5M775 1068 aa18.43■□□□□ 0.54
USHBP1-202ENST00000324554 SYT10Q6XYQ8 523 aa18.43■□□□□ 0.54
USHBP1-202ENST00000324554 CNBD1Q8NA66 436 aa18.43■□□□□ 0.54
USHBP1-202ENST00000324554 GTPBP4Q9BZE4 634 aaKnown RBP18.43■□□□□ 0.54
USHBP1-202ENST00000324554 RAI14Q9P0K7 980 aa18.43■□□□□ 0.54
USHBP1-202ENST00000324554 ANAPC4Q9UJX5 808 aa18.43■□□□□ 0.54
USHBP1-202ENST00000324554 MAGEB6P1A0A0J9YX57 407 aa18.43■□□□□ 0.54
USHBP1-202ENST00000324554 SMIM22K7EJ46 135 aa18.43■□□□□ 0.54
USHBP1-202ENST00000324554 TM4SF1P30408 202 aa18.43■□□□□ 0.54
USHBP1-202ENST00000324554 KCNJ6P48051 423 aa18.43■□□□□ 0.54
USHBP1-202ENST00000324554 GRIN1Q05586 938 aa18.43■□□□□ 0.54
USHBP1-202ENST00000324554 SEC23AQ15436 765 aa18.43■□□□□ 0.54
USHBP1-202ENST00000324554 PTPN21Q16825 1174 aa18.43■□□□□ 0.54
USHBP1-202ENST00000324554 TFCP2L1Q9NZI6 479 aa18.43■□□□□ 0.54
USHBP1-202ENST00000324554 FBXO2Q9UK22 296 aaPredicted RBP18.43■□□□□ 0.54
USHBP1-202ENST00000324554 PCDHA5Q9Y5H7 936 aa18.43■□□□□ 0.54
USHBP1-202ENST00000324554 TNKSO95271 1327 aa18.43■□□□□ 0.54
USHBP1-202ENST00000324554 FOXN1O15353 648 aa18.42■□□□□ 0.54
USHBP1-202ENST00000324554 PTPREP23469 700 aa18.42■□□□□ 0.54
USHBP1-202ENST00000324554 MDM2Q00987 491 aaPredicted RBP18.42■□□□□ 0.54
USHBP1-202ENST00000324554 SLC27A3Q5K4L6 730 aa18.42■□□□□ 0.54
USHBP1-202ENST00000324554 ELOA2Q8IYF1 753 aaPredicted RBP18.42■□□□□ 0.54
USHBP1-202ENST00000324554 ZNF397Q8NF99 534 aaPredicted RBP18.42■□□□□ 0.54
USHBP1-202ENST00000324554 RIOK1Q9BRS2 568 aaKnown RBP18.42■□□□□ 0.54
USHBP1-202ENST00000324554 L2HGDHQ9H9P8 463 aa18.42■□□□□ 0.54
USHBP1-202ENST00000324554 RXRBP28702 533 aa18.42■□□□□ 0.54
USHBP1-202ENST00000324554 UBASH3AP57075 661 aa18.42■□□□□ 0.54
USHBP1-202ENST00000324554 ZNF827Q17R98 1081 aa18.42■□□□□ 0.54
USHBP1-202ENST00000324554 FBXO38Q6PIJ6 1188 aa18.42■□□□□ 0.54
USHBP1-202ENST00000324554 LRRN4CLQ8ND94 238 aa18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms