RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 SLURP2P0DP57 97 aa21.48■■□□□ 1.03
USP39-201ENST00000323701 CACNB3P54284 484 aa21.48■■□□□ 1.03
USP39-201ENST00000323701 TROAPQ12815 778 aa21.48■■□□□ 1.03
USP39-201ENST00000323701 FBXO18Q8NFZ0 1043 aa21.48■■□□□ 1.03
USP39-201ENST00000323701 SGIP1Q9BQI5 828 aa21.48■■□□□ 1.03
USP39-201ENST00000323701 NBPF11Q86T75 865 aa21.48■■□□□ 1.03
USP39-201ENST00000323701 TTC6Q86TZ1 520 aa21.48■■□□□ 1.03
USP39-201ENST00000323701 RTKN2Q8IZC4 609 aa21.48■■□□□ 1.03
USP39-201ENST00000323701 SUPT20HQ8NEM7 779 aa21.48■■□□□ 1.03
USP39-201ENST00000323701 C8orf76Q96K31 380 aa21.48■■□□□ 1.03
USP39-201ENST00000323701 PSMD1Q99460 953 aa21.48■■□□□ 1.03
USP39-201ENST00000323701 FTOQ9C0B1 505 aaKnown RBP eCLIP21.48■■□□□ 1.03
USP39-201ENST00000323701 MKNK2Q9HBH9 465 aa21.48■■□□□ 1.03
USP39-201ENST00000323701 KIF3AQ9Y496 699 aa21.48■■□□□ 1.03
USP39-201ENST00000323701 CDK8P49336 464 aa21.47■■□□□ 1.03
USP39-201ENST00000323701 ZFPM1Q8IX07 1006 aa21.47■■□□□ 1.03
USP39-201ENST00000323701 SLC26A6Q9BXS9 759 aa21.47■■□□□ 1.03
USP39-201ENST00000323701 IFNAR1P17181 557 aa21.47■■□□□ 1.03
USP39-201ENST00000323701 IARSP41252 1262 aaKnown RBP21.47■■□□□ 1.03
USP39-201ENST00000323701 FKBP1AP62942 108 aaKnown RBP21.47■■□□□ 1.03
USP39-201ENST00000323701 C16orf86Q6ZW13 317 aa21.47■■□□□ 1.03
USP39-201ENST00000323701 ZDHHC15Q96MV8 337 aa21.47■■□□□ 1.03
USP39-201ENST00000323701 TMEM63CQ9P1W3 806 aa21.47■■□□□ 1.03
USP39-201ENST00000323701 PIM2Q9P1W9 311 aa21.47■■□□□ 1.03
USP39-201ENST00000323701 POLD1P28340 1107 aa21.46■■□□□ 1.03
USP39-201ENST00000323701 TGFB2P61812 414 aa21.46■■□□□ 1.03
USP39-201ENST00000323701 AMOTL1Q8IY63 956 aa21.46■■□□□ 1.03
USP39-201ENST00000323701 ALG1Q9BT22 464 aa21.46■■□□□ 1.03
USP39-201ENST00000323701 KIF28PB7ZC32 967 aa21.46■■□□□ 1.03
USP39-201ENST00000323701 RAD17O75943 681 aa21.46■■□□□ 1.03
USP39-201ENST00000323701 CDKL5O76039 1030 aa21.46■■□□□ 1.03
USP39-201ENST00000323701 PLEKHA8P1O95397 391 aa21.45■■□□□ 1.02
USP39-201ENST00000323701 FMNL1O95466 1100 aaPredicted RBP21.45■■□□□ 1.02
USP39-201ENST00000323701 KRT85P78386 507 aa21.45■■□□□ 1.02
USP39-201ENST00000323701 FUT2Q10981 343 aa21.45■■□□□ 1.02
USP39-201ENST00000323701 LARGE2Q8N3Y3 721 aa21.45■■□□□ 1.02
USP39-201ENST00000323701 CRACR2BQ8N4Y2 399 aaPredicted RBP21.45■■□□□ 1.02
USP39-201ENST00000323701 ZSCAN16Q9H4T2 348 aaPredicted RBP21.45■■□□□ 1.02
USP39-201ENST00000323701 RBM5P52756 815 aaKnown RBP eCLIP21.44■■□□□ 1.02
USP39-201ENST00000323701 RCAN1P53805 252 aa21.44■■□□□ 1.02
USP39-201ENST00000323701 CATIPQ7Z7H3 387 aa21.44■■□□□ 1.02
USP39-201ENST00000323701 KLHL34Q8N239 644 aa21.44■■□□□ 1.02
USP39-201ENST00000323701 CPLX2Q6PUV4 134 aaKnown RBP21.44■■□□□ 1.02
USP39-201ENST00000323701 GAS2L3Q86XJ1 694 aa21.44■■□□□ 1.02
USP39-201ENST00000323701 hCG_1642624A0A1W2PR95 340 aa21.43■■□□□ 1.02
USP39-201ENST00000323701 TSPY3P0CV98 308 aa21.43■■□□□ 1.02
USP39-201ENST00000323701 TSPY8P0CW00 308 aa21.43■■□□□ 1.02
USP39-201ENST00000323701 PTGER2P43116 358 aa21.43■■□□□ 1.02
USP39-201ENST00000323701 CEBPZQ03701 1054 aaKnown RBP21.43■■□□□ 1.02
USP39-201ENST00000323701 SSRP1Q08945 709 aaKnown RBP21.43■■□□□ 1.02
USP39-201ENST00000323701 ZNF444Q8N0Y2 327 aaPredicted RBP21.43■■□□□ 1.02
USP39-201ENST00000323701 BRCA1P38398 1863 aaKnown RBP21.43■■□□□ 1.02
USP39-201ENST00000323701 BAZ2BQ9UIF8 2168 aaKnown RBP21.43■■□□□ 1.02
USP39-201ENST00000323701 PSMD14O00487 310 aa21.43■■□□□ 1.02
USP39-201ENST00000323701 PRKCSHP14314 528 aaPredicted RBP21.43■■□□□ 1.02
USP39-201ENST00000323701 GABPAQ06546 454 aa21.43■■□□□ 1.02
USP39-201ENST00000323701 KRT40Q6A162 431 aa21.43■■□□□ 1.02
USP39-201ENST00000323701 LEO1Q8WVC0 666 aaPredicted RBP21.43■■□□□ 1.02
USP39-201ENST00000323701 SHISA4Q96DD7 197 aa21.43■■□□□ 1.02
USP39-201ENST00000323701 MRIQ9BWK5 157 aa21.43■■□□□ 1.02
USP39-201ENST00000323701 OSBPL5Q9H0X9 879 aaPredicted RBP21.43■■□□□ 1.02
USP39-201ENST00000323701 TCP10Q12799 353 aa21.42■■□□□ 1.02
USP39-201ENST00000323701 ZSCAN23Q3MJ62 389 aa21.42■■□□□ 1.02
USP39-201ENST00000323701 GRIPAP1Q4V328 841 aa21.42■■□□□ 1.02
USP39-201ENST00000323701 DALRD3Q5D0E6 543 aaKnown RBP21.42■■□□□ 1.02
USP39-201ENST00000323701 RASGRP2Q7LDG7 609 aa21.42■■□□□ 1.02
USP39-201ENST00000323701 FAM198AQ9UFP1 575 aa21.42■■□□□ 1.02
USP39-201ENST00000323701 ZBTB12Q9Y330 459 aaPredicted RBP21.42■■□□□ 1.02
USP39-201ENST00000323701 MYH15Q9Y2K3 1946 aa21.42■■□□□ 1.02
USP39-201ENST00000323701 KIF23Q02241 960 aaPredicted RBP21.41■■□□□ 1.02
USP39-201ENST00000323701 GNL3Q9BVP2 549 aaKnown RBP eCLIP21.41■■□□□ 1.02
USP39-201ENST00000323701 STK36Q9NRP7 1315 aa21.41■■□□□ 1.02
USP39-201ENST00000323701 MBD3O95983 291 aa21.41■■□□□ 1.02
USP39-201ENST00000323701 UBE2HP62256 183 aa21.41■■□□□ 1.02
USP39-201ENST00000323701 HDLBPQ00341 1268 aaKnown RBP21.41■■□□□ 1.02
USP39-201ENST00000323701 PRMT6Q96LA8 375 aaPredicted RBP21.41■■□□□ 1.02
USP39-201ENST00000323701 USP28Q96RU2 1077 aa21.41■■□□□ 1.02
USP39-201ENST00000323701 SERPINA10Q9UK55 444 aa21.41■■□□□ 1.02
USP39-201ENST00000323701 PSME4Q14997 1843 aa21.41■■□□□ 1.02
USP39-201ENST00000323701 DDAH1O94760 285 aa21.4■■□□□ 1.02
USP39-201ENST00000323701 DGKHQ86XP1 1220 aa21.4■■□□□ 1.02
USP39-201ENST00000323701 SPATA32Q96LK8 384 aa21.4■■□□□ 1.02
USP39-201ENST00000323701 GMLQ99445 158 aa21.4■■□□□ 1.02
USP39-201ENST00000323701 CCDC196A0A1B0GTZ2 297 aa21.4■■□□□ 1.02
USP39-201ENST00000323701 SH3BP5LQ7L8J4 393 aa21.4■■□□□ 1.02
USP39-201ENST00000323701 SRBD1Q8N5C6 995 aaKnown RBP21.4■■□□□ 1.02
USP39-201ENST00000323701 ANKS1AQ92625 1134 aa21.4■■□□□ 1.02
USP39-201ENST00000323701 TDRD3Q9H7E2 651 aaKnown RBP21.4■■□□□ 1.02
USP39-201ENST00000323701 TCP11L1Q9NUJ3 509 aa21.4■■□□□ 1.02
USP39-201ENST00000323701 FSD2A1L4K1 749 aa21.39■■□□□ 1.01
USP39-201ENST00000323701 DDTLA6NHG4 134 aaPredicted RBP21.39■■□□□ 1.01
USP39-201ENST00000323701 NFKBIEO00221 500 aa21.39■■□□□ 1.01
USP39-201ENST00000323701 VIL1P09327 827 aaKnown RBP21.39■■□□□ 1.01
USP39-201ENST00000323701 PKN1Q16512 942 aa21.39■■□□□ 1.01
USP39-201ENST00000323701 CFAP100Q494V2 611 aa21.39■■□□□ 1.01
USP39-201ENST00000323701 RSBN1LQ6PCB5 846 aaPredicted RBP21.39■■□□□ 1.01
USP39-201ENST00000323701 TMTC3Q6ZXV5 915 aa21.39■■□□□ 1.01
USP39-201ENST00000323701 PNMA1Q8ND90 353 aa21.39■■□□□ 1.01
USP39-201ENST00000323701 PGBD1Q96JS3 809 aa21.39■■□□□ 1.01
USP39-201ENST00000323701 TMEM47Q9BQJ4 181 aa21.39■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms