RNA–Protein interactions for RNA: ENST00000318787.13

HDDC2-201, Transcript of HD domain containing 2, humanhuman

TSL 1 (best)

Gene HDDC2, Length 1,350 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC2-201ENST00000318787 HMGCS2P54868 508 aa19.38■□□□□ 0.69
HDDC2-201ENST00000318787 GPAT2Q6NUI2 795 aa19.38■□□□□ 0.69
HDDC2-201ENST00000318787 ERC2O15083 957 aa19.37■□□□□ 0.69
HDDC2-201ENST00000318787 PRKAB2O43741 272 aa19.37■□□□□ 0.69
HDDC2-201ENST00000318787 SOX10P56693 466 aa19.37■□□□□ 0.69
HDDC2-201ENST00000318787 SAMD1Q6SPF0 538 aaPredicted RBP19.37■□□□□ 0.69
HDDC2-201ENST00000318787 SMCR8Q8TEV9 937 aaPredicted RBP19.37■□□□□ 0.69
HDDC2-201ENST00000318787 ZBTB21Q9ULJ3 1066 aa19.37■□□□□ 0.69
HDDC2-201ENST00000318787 GH2P01242 217 aa19.36■□□□□ 0.69
HDDC2-201ENST00000318787 MX1P20591 662 aa19.36■□□□□ 0.69
HDDC2-201ENST00000318787 IRX6P78412 446 aaPredicted RBP19.36■□□□□ 0.69
HDDC2-201ENST00000318787 JAG1P78504 1218 aa19.36■□□□□ 0.69
HDDC2-201ENST00000318787 MTMR2Q13614 643 aa19.36■□□□□ 0.69
HDDC2-201ENST00000318787 RAB3GAP1Q15042 981 aa19.36■□□□□ 0.69
HDDC2-201ENST00000318787 UBE3CQ15386 1083 aa19.36■□□□□ 0.69
HDDC2-201ENST00000318787 TREML2Q5T2D2 321 aa19.36■□□□□ 0.69
HDDC2-201ENST00000318787 B4GALNT3Q6L9W6 998 aa19.36■□□□□ 0.69
HDDC2-201ENST00000318787 GCC1Q96CN9 775 aa19.36■□□□□ 0.69
HDDC2-201ENST00000318787 DDRGK1Q96HY6 314 aa19.36■□□□□ 0.69
HDDC2-201ENST00000318787 ARHGAP39Q9C0H5 1083 aa19.36■□□□□ 0.69
HDDC2-201ENST00000318787 DCP1AQ9NPI6 582 aaPredicted RBP19.36■□□□□ 0.69
HDDC2-201ENST00000318787 SLC4A4Q9Y6R1 1079 aa19.36■□□□□ 0.69
HDDC2-201ENST00000318787 TTC41PQ6P2S7 1318 aa19.35■□□□□ 0.69
HDDC2-201ENST00000318787 CYP2D6P10635 497 aa19.35■□□□□ 0.69
HDDC2-201ENST00000318787 RGS19P49795 217 aa19.35■□□□□ 0.69
HDDC2-201ENST00000318787 LACTBP83111 547 aaPredicted RBP19.35■□□□□ 0.69
HDDC2-201ENST00000318787 CAP1Q01518 475 aa19.35■□□□□ 0.69
HDDC2-201ENST00000318787 EVX2Q03828 476 aa19.35■□□□□ 0.69
HDDC2-201ENST00000318787 ARHGEF6Q15052 776 aa19.35■□□□□ 0.69
HDDC2-201ENST00000318787 CERKLQ49MI3 558 aaPredicted RBP19.35■□□□□ 0.69
HDDC2-201ENST00000318787 AMOTL1Q8IY63 956 aa19.35■□□□□ 0.69
HDDC2-201ENST00000318787 KBTBD3Q8NAB2 608 aa19.35■□□□□ 0.69
HDDC2-201ENST00000318787 TBC1D2Q9BYX2 928 aa19.35■□□□□ 0.69
HDDC2-201ENST00000318787 PUS7LQ9H0K6 701 aaKnown RBP19.35■□□□□ 0.69
HDDC2-201ENST00000318787 AGTPBP1Q9UPW5 1226 aa19.35■□□□□ 0.69
HDDC2-201ENST00000318787 MPHOSPH10O00566 681 aaKnown RBP19.34■□□□□ 0.69
HDDC2-201ENST00000318787 HDAC1Q13547 482 aaPredicted RBP19.34■□□□□ 0.69
HDDC2-201ENST00000318787 ZYXQ15942 572 aaKnown RBP19.34■□□□□ 0.69
HDDC2-201ENST00000318787 METTL16Q86W50 562 aaKnown RBP19.34■□□□□ 0.69
HDDC2-201ENST00000318787 FEZ1Q99689 392 aa19.34■□□□□ 0.69
HDDC2-201ENST00000318787 FSD1Q9BTV5 496 aa19.34■□□□□ 0.69
HDDC2-201ENST00000318787 EHD4Q9H223 541 aa19.34■□□□□ 0.69
HDDC2-201ENST00000318787 TMOD4Q9NZQ9 345 aa19.34■□□□□ 0.69
HDDC2-201ENST00000318787 GLRX3O76003 335 aaKnown RBP19.33■□□□□ 0.69
HDDC2-201ENST00000318787 ABCB5Q2M3G0 1257 aa19.33■□□□□ 0.69
HDDC2-201ENST00000318787 C17orf99Q6UX52 265 aa19.33■□□□□ 0.69
HDDC2-201ENST00000318787 PROCA1Q8NCQ7 364 aaPredicted RBP19.33■□□□□ 0.69
HDDC2-201ENST00000318787 RWDD1Q9H446 243 aaPredicted RBP19.33■□□□□ 0.69
HDDC2-201ENST00000318787 CABP5Q9NP86 173 aa19.33■□□□□ 0.69
HDDC2-201ENST00000318787 PTPN22Q9Y2R2 807 aa19.33■□□□□ 0.69
HDDC2-201ENST00000318787 CYP2D7A0A087X1C5 515 aa19.32■□□□□ 0.68
HDDC2-201ENST00000318787 FMNL1O95466 1100 aaPredicted RBP19.32■□□□□ 0.68
HDDC2-201ENST00000318787 MYCNP04198 464 aaPredicted RBP19.32■□□□□ 0.68
HDDC2-201ENST00000318787 PI4K2BQ8TCG2 481 aa19.32■□□□□ 0.68
HDDC2-201ENST00000318787 LNPKQ9C0E8 428 aa19.32■□□□□ 0.68
HDDC2-201ENST00000318787 ATP8A2Q9NTI2 1148 aa19.32■□□□□ 0.68
HDDC2-201ENST00000318787 PNMA3Q9UL41 463 aa19.32■□□□□ 0.68
HDDC2-201ENST00000318787 ADGRA2Q96PE1 1338 aa19.32■□□□□ 0.68
HDDC2-201ENST00000318787 USP17L10C9JJH3 530 aa19.32■□□□□ 0.68
HDDC2-201ENST00000318787 RNF113AO15541 343 aaKnown RBP19.32■□□□□ 0.68
HDDC2-201ENST00000318787 SHMT1P34896 483 aa19.32■□□□□ 0.68
HDDC2-201ENST00000318787 PSMC4P43686 418 aa19.32■□□□□ 0.68
HDDC2-201ENST00000318787 BACE1P56817 501 aa19.32■□□□□ 0.68
HDDC2-201ENST00000318787 MLLT1Q03111 559 aaPredicted RBP19.32■□□□□ 0.68
HDDC2-201ENST00000318787 PABPC4Q13310 644 aaKnown RBP eCLIP19.32■□□□□ 0.682e-10■■□□□ 12.4
HDDC2-201ENST00000318787 AAMPQ13685 434 aa19.32■□□□□ 0.68
HDDC2-201ENST00000318787 TATDN1Q6P1N9 297 aa19.32■□□□□ 0.68
HDDC2-201ENST00000318787 STK11IPQ8N1F8 1099 aa19.32■□□□□ 0.68
HDDC2-201ENST00000318787 SLC44A5Q8NCS7 719 aa19.32■□□□□ 0.68
HDDC2-201ENST00000318787 APPBP2Q92624 585 aa19.32■□□□□ 0.68
HDDC2-201ENST00000318787 DYNLL2Q96FJ2 89 aa19.32■□□□□ 0.68
HDDC2-201ENST00000318787 WDR18Q9BV38 432 aa19.32■□□□□ 0.68
HDDC2-201ENST00000318787 OSBPP22059 807 aa19.31■□□□□ 0.68
HDDC2-201ENST00000318787 LRRFIP1Q32MZ4 808 aaKnown RBP19.31■□□□□ 0.68
HDDC2-201ENST00000318787 ANKRD13CQ8N6S4 541 aa19.31■□□□□ 0.68
HDDC2-201ENST00000318787 GINM1Q9NU53 330 aa19.31■□□□□ 0.68
HDDC2-201ENST00000318787 SLC45A1Q9Y2W3 748 aa19.31■□□□□ 0.68
HDDC2-201ENST00000318787 PTCH2Q9Y6C5 1203 aa19.31■□□□□ 0.68
HDDC2-201ENST00000318787 USP17L12C9JPN9 530 aa19.3■□□□□ 0.68
HDDC2-201ENST00000318787 USP17L21D6R901 530 aa19.3■□□□□ 0.68
HDDC2-201ENST00000318787 MYCP01106 439 aaPredicted RBP19.3■□□□□ 0.68
HDDC2-201ENST00000318787 APPP05067 770 aa19.3■□□□□ 0.68
HDDC2-201ENST00000318787 ZFYP08048 801 aaPredicted RBP19.3■□□□□ 0.68
HDDC2-201ENST00000318787 IRX3P78415 501 aaPredicted RBP19.3■□□□□ 0.68
HDDC2-201ENST00000318787 OSBP2Q969R2 916 aa19.3■□□□□ 0.68
HDDC2-201ENST00000318787 FOXD4L1Q9NU39 408 aa19.3■□□□□ 0.68
HDDC2-201ENST00000318787 M0R2C6 588 aa19.29■□□□□ 0.68
HDDC2-201ENST00000318787 IGHDP01880 384 aa19.29■□□□□ 0.68
HDDC2-201ENST00000318787 SLC9C1Q4G0N8 1177 aa19.29■□□□□ 0.68
HDDC2-201ENST00000318787 TRIM47Q96LD4 638 aa19.29■□□□□ 0.68
HDDC2-201ENST00000318787 C19orf81C9J6K1 198 aa19.28■□□□□ 0.68
HDDC2-201ENST00000318787 SMIM22K7EJ46 135 aa19.28■□□□□ 0.68
HDDC2-201ENST00000318787 GPAA1O43292 621 aa19.28■□□□□ 0.68
HDDC2-201ENST00000318787 BCRP11274 1271 aa19.28■□□□□ 0.68
HDDC2-201ENST00000318787 CTGFP29279 349 aa19.28■□□□□ 0.68
HDDC2-201ENST00000318787 FCGRTP55899 365 aa19.28■□□□□ 0.68
HDDC2-201ENST00000318787 GABPAQ06546 454 aa19.28■□□□□ 0.68
HDDC2-201ENST00000318787 SEPT2Q15019 361 aa19.28■□□□□ 0.68
HDDC2-201ENST00000318787 SH3D19Q5HYK7 790 aa19.28■□□□□ 0.68
HDDC2-201ENST00000318787 STRBPQ96SI9 672 aaKnown RBP19.28■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms