RNA–Protein interactions for RNA: ENST00000316707.10

PTPN13-201, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 7,546 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-201ENST00000316707 ALX1Q15699 326 aa5.39□□□□□ -1.55
PTPN13-201ENST00000316707 PAPD7Q5XG87 772 aaKnown RBP5.39□□□□□ -1.55
PTPN13-201ENST00000316707 GGA2Q9UJY4 613 aa5.39□□□□□ -1.55
PTPN13-201ENST00000316707 SLC12A7Q9Y666 1083 aa5.39□□□□□ -1.55
PTPN13-201ENST00000316707 USO1O60763 962 aaKnown RBP5.39□□□□□ -1.55
PTPN13-201ENST00000316707 CCDC172P0C7W6 258 aa5.39□□□□□ -1.55
PTPN13-201ENST00000316707 GYS2P54840 703 aa5.39□□□□□ -1.55
PTPN13-201ENST00000316707 MDM2Q00987 491 aaPredicted RBP5.39□□□□□ -1.55
PTPN13-201ENST00000316707 USHBP1Q8N6Y0 703 aa5.39□□□□□ -1.55
PTPN13-201ENST00000316707 CCDC47Q96A33 483 aaKnown RBP5.39□□□□□ -1.55
PTPN13-201ENST00000316707 CABS1Q96KC9 395 aa5.39□□□□□ -1.55
PTPN13-201ENST00000316707 NUP58Q9BVL2 599 aa5.39□□□□□ -1.55
PTPN13-201ENST00000316707 KRT23Q9C075 422 aa5.39□□□□□ -1.55
PTPN13-201ENST00000316707 FAM169AQ9Y6X4 670 aa5.39□□□□□ -1.55
PTPN13-201ENST00000316707 PREX1Q8TCU6 1659 aa5.39□□□□□ -1.55
PTPN13-201ENST00000316707 ANTXR2P58335 489 aa5.39□□□□□ -1.55
PTPN13-201ENST00000316707 C1orf131Q8NDD1 294 aaKnown RBP5.39□□□□□ -1.55
PTPN13-201ENST00000316707 CAPS2Q9BXY5 557 aa5.39□□□□□ -1.55
PTPN13-201ENST00000316707 NACAP1Q9BZK3 213 aa5.39□□□□□ -1.55
PTPN13-201ENST00000316707 RNF41Q9H4P4 317 aaPredicted RBP5.39□□□□□ -1.55
PTPN13-201ENST00000316707 H7C1D1 291 aa5.38□□□□□ -1.55
PTPN13-201ENST00000316707 TCP1P17987 556 aaKnown RBP5.38□□□□□ -1.55
PTPN13-201ENST00000316707 EEF1GP26641 437 aaKnown RBP5.38□□□□□ -1.55
PTPN13-201ENST00000316707 RBL2Q08999 1139 aa5.38□□□□□ -1.55
PTPN13-201ENST00000316707 GLE1Q53GS7 698 aaKnown RBP5.38□□□□□ -1.55
PTPN13-201ENST00000316707 ARMC9Q7Z3E5 817 aa5.38□□□□□ -1.55
PTPN13-201ENST00000316707 TAX1BP1Q86VP1 789 aa5.38□□□□□ -1.55
PTPN13-201ENST00000316707 CCDC50Q8IVM0 306 aa5.38□□□□□ -1.55
PTPN13-201ENST00000316707 CCDC170Q8IYT3 715 aa5.38□□□□□ -1.55
PTPN13-201ENST00000316707 CPLX3Q8WVH0 158 aa5.38□□□□□ -1.55
PTPN13-201ENST00000316707 OSBP2Q969R2 916 aa5.38□□□□□ -1.55
PTPN13-201ENST00000316707 DRC1Q96MC2 740 aa5.38□□□□□ -1.55
PTPN13-201ENST00000316707 MAP3K14Q99558 947 aa5.38□□□□□ -1.55
PTPN13-201ENST00000316707 ERICH2A1L162 156 aa5.38□□□□□ -1.55
PTPN13-201ENST00000316707 SOWAHDA6NJG2 315 aa5.38□□□□□ -1.55
PTPN13-201ENST00000316707 SH2B2O14492 632 aaPredicted RBP5.38□□□□□ -1.55
PTPN13-201ENST00000316707 CHUKO15111 745 aa5.38□□□□□ -1.55
PTPN13-201ENST00000316707 PAFAH1B1P43034 410 aa5.38□□□□□ -1.55
PTPN13-201ENST00000316707 IRAK1P51617 712 aa5.38□□□□□ -1.55
PTPN13-201ENST00000316707 DRP2Q13474 957 aa5.38□□□□□ -1.55
PTPN13-201ENST00000316707 BCAS4Q8TDM0 211 aa5.38□□□□□ -1.55
PTPN13-201ENST00000316707 SAMSN1Q9NSI8 373 aaKnown RBP5.38□□□□□ -1.55
PTPN13-201ENST00000316707 LMTK3Q96Q04 1460 aa5.38□□□□□ -1.55
PTPN13-201ENST00000316707 KDM6AO15550 1401 aaPredicted RBP5.38□□□□□ -1.55
PTPN13-201ENST00000316707 CRYBG1Q9Y4K1 1723 aa5.38□□□□□ -1.55
PTPN13-201ENST00000316707 PRPF6O94906 941 aaKnown RBP5.38□□□□□ -1.55
PTPN13-201ENST00000316707 MYL1P05976 194 aa5.38□□□□□ -1.55
PTPN13-201ENST00000316707 NNTQ13423 1086 aa5.38□□□□□ -1.55
PTPN13-201ENST00000316707 CCDC122Q5T0U0 273 aa5.38□□□□□ -1.55
PTPN13-201ENST00000316707 CCNI2Q6ZMN8 369 aaPredicted RBP5.38□□□□□ -1.55
PTPN13-201ENST00000316707 MMGT1Q8N4V1 131 aa5.38□□□□□ -1.55
PTPN13-201ENST00000316707 C3orf20Q8ND61 904 aa5.38□□□□□ -1.55
PTPN13-201ENST00000316707 ZNF622Q969S3 477 aaKnown RBP eCLIP5.38□□□□□ -1.55
PTPN13-201ENST00000316707 LUC7LQ9NQ29 371 aaKnown RBP5.38□□□□□ -1.55
PTPN13-201ENST00000316707 CWC25Q9NXE8 425 aaPredicted RBP5.38□□□□□ -1.55
PTPN13-201ENST00000316707 NDUFAB1O14561 156 aa5.38□□□□□ -1.55
PTPN13-201ENST00000316707 ZEB2O60315 1214 aa5.38□□□□□ -1.55
PTPN13-201ENST00000316707 TACC1O75410 805 aa5.38□□□□□ -1.55
PTPN13-201ENST00000316707 PRLRP16471 622 aa5.38□□□□□ -1.55
PTPN13-201ENST00000316707 VAV2P52735 878 aa5.38□□□□□ -1.55
PTPN13-201ENST00000316707 TRAPPC11Q7Z392 1133 aa5.38□□□□□ -1.55
PTPN13-201ENST00000316707 P3H4Q92791 437 aa5.38□□□□□ -1.55
PTPN13-201ENST00000316707 IRX2Q9BZI1 471 aaPredicted RBP5.38□□□□□ -1.55
PTPN13-201ENST00000316707 TSKSQ9UJT2 592 aa5.38□□□□□ -1.55
PTPN13-201ENST00000316707 HPCAL4Q9UM19 191 aa5.38□□□□□ -1.55
PTPN13-201ENST00000316707 GOLGA6L7A0A1B0GV03 622 aa5.38□□□□□ -1.55
PTPN13-201ENST00000316707 EXOC5O00471 708 aa5.38□□□□□ -1.55
PTPN13-201ENST00000316707 EPB41P11171 864 aaKnown RBP5.38□□□□□ -1.55
PTPN13-201ENST00000316707 HOXA7P31268 230 aaPredicted RBP5.38□□□□□ -1.55
PTPN13-201ENST00000316707 EPHB4P54760 987 aa5.38□□□□□ -1.55
PTPN13-201ENST00000316707 PDE4BQ07343 736 aa5.38□□□□□ -1.55
PTPN13-201ENST00000316707 OTUD6BQ8N6M0 293 aa5.38□□□□□ -1.55
PTPN13-201ENST00000316707 SIGLEC1Q9BZZ2 1709 aa5.38□□□□□ -1.55
PTPN13-201ENST00000316707 NDUFA10O95299 355 aa5.38□□□□□ -1.55
PTPN13-201ENST00000316707 MMP1P03956 469 aa5.38□□□□□ -1.55
PTPN13-201ENST00000316707 UQCRFS1P1P0C7P4 283 aa5.38□□□□□ -1.55
PTPN13-201ENST00000316707 BMP6P22004 513 aa5.38□□□□□ -1.55
PTPN13-201ENST00000316707 TRAPPC10P48553 1259 aa5.38□□□□□ -1.55
PTPN13-201ENST00000316707 FKBP4Q02790 459 aaKnown RBP eCLIP5.38□□□□□ -1.55
PTPN13-201ENST00000316707 KIF5AQ12840 1032 aa5.38□□□□□ -1.55
PTPN13-201ENST00000316707 PLCB4Q15147 1175 aa5.38□□□□□ -1.55
PTPN13-201ENST00000316707 MICU3Q86XE3 530 aa5.38□□□□□ -1.55
PTPN13-201ENST00000316707 ANKLE2Q86XL3 938 aa5.38□□□□□ -1.55
PTPN13-201ENST00000316707 TRIM58Q8NG06 486 aa5.38□□□□□ -1.55
PTPN13-201ENST00000316707 GIMAP7Q8NHV1 300 aa5.38□□□□□ -1.55
PTPN13-201ENST00000316707 TSGA10Q9BZW7 698 aa5.38□□□□□ -1.55
PTPN13-201ENST00000316707 RWDD2AQ9UIY3 292 aa5.38□□□□□ -1.55
PTPN13-201ENST00000316707 GUCA1BQ9UMX6 200 aa5.38□□□□□ -1.55
PTPN13-201ENST00000316707 ABCC6O95255 1503 aa5.38□□□□□ -1.55
PTPN13-201ENST00000316707 POLR2DO15514 142 aaKnown RBP5.37□□□□□ -1.55
PTPN13-201ENST00000316707 FMNL1O95466 1100 aaPredicted RBP5.37□□□□□ -1.55
PTPN13-201ENST00000316707 TATP17735 454 aaPredicted RBP5.37□□□□□ -1.55
PTPN13-201ENST00000316707 SKOR1P84550 965 aa5.37□□□□□ -1.55
PTPN13-201ENST00000316707 FMR1Q06787 632 aaKnown RBP eCLIP5.37□□□□□ -1.55
PTPN13-201ENST00000316707 CUL4BQ13620 913 aa5.37□□□□□ -1.55
PTPN13-201ENST00000316707 CCDC57Q2TAC2 916 aa5.37□□□□□ -1.55
PTPN13-201ENST00000316707 SLC9C2Q5TAH2 1124 aa5.37□□□□□ -1.55
PTPN13-201ENST00000316707 SH3RF1Q7Z6J0 888 aa5.37□□□□□ -1.55
PTPN13-201ENST00000316707 IFNL2Q8IZJ0 200 aa5.37□□□□□ -1.55
PTPN13-201ENST00000316707 DCAF5Q96JK2 942 aa5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms