RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 DTNBO60941 627 aa19.29■□□□□ 0.68
SYNPO-201ENST00000307662 PPARDQ03181 441 aa19.29■□□□□ 0.68
SYNPO-201ENST00000307662 DBNDD2Q9BQY9 259 aa19.29■□□□□ 0.68
SYNPO-201ENST00000307662 V9GY48 417 aaPredicted RBP19.29■□□□□ 0.68
SYNPO-201ENST00000307662 NCKAP5LQ9HCH0 1330 aa19.29■□□□□ 0.68
SYNPO-201ENST00000307662 PHLDB2Q86SQ0 1253 aa19.29■□□□□ 0.68
SYNPO-201ENST00000307662 CCDC84Q86UT8 332 aaPredicted RBP19.29■□□□□ 0.68
SYNPO-201ENST00000307662 TRIM58Q8NG06 486 aa19.29■□□□□ 0.68
SYNPO-201ENST00000307662 DESI2Q9BSY9 194 aa19.29■□□□□ 0.68
SYNPO-201ENST00000307662 MAK16Q9BXY0 300 aaKnown RBP19.29■□□□□ 0.68
SYNPO-201ENST00000307662 ASIC3Q9UHC3 531 aa19.29■□□□□ 0.68
SYNPO-201ENST00000307662 FAM184BQ9ULE4 1060 aa19.29■□□□□ 0.68
SYNPO-201ENST00000307662 CHL1O00533 1208 aa19.29■□□□□ 0.68
SYNPO-201ENST00000307662 LIG3P49916 1009 aa19.29■□□□□ 0.68
SYNPO-201ENST00000307662 DENND2CQ68D51 928 aa19.29■□□□□ 0.68
SYNPO-201ENST00000307662 BCAS4Q8TDM0 211 aa19.29■□□□□ 0.68
SYNPO-201ENST00000307662 MTMR6Q9Y217 621 aa19.29■□□□□ 0.68
SYNPO-201ENST00000307662 UTP18Q9Y5J1 556 aaKnown RBP eCLIP19.28■□□□□ 0.68
SYNPO-201ENST00000307662 CASQ2O14958 399 aaPredicted RBP19.28■□□□□ 0.68
SYNPO-201ENST00000307662 MRRFQ96E11 262 aaKnown RBP19.28■□□□□ 0.68
SYNPO-201ENST00000307662 NUCKS1Q9H1E3 243 aaKnown RBP19.28■□□□□ 0.68
SYNPO-201ENST00000307662 TBX22Q9Y458 520 aa19.28■□□□□ 0.68
SYNPO-201ENST00000307662 PFKFB1P16118 471 aa19.28■□□□□ 0.68
SYNPO-201ENST00000307662 CDC25BP30305 580 aa19.28■□□□□ 0.68
SYNPO-201ENST00000307662 KLHL30Q0D2K2 578 aa19.28■□□□□ 0.68
SYNPO-201ENST00000307662 SFMBT2Q5VUG0 894 aa19.28■□□□□ 0.68
SYNPO-201ENST00000307662 HELBQ8NG08 1087 aaPredicted RBP19.28■□□□□ 0.68
SYNPO-201ENST00000307662 HSPA1LP34931 641 aa19.28■□□□□ 0.68
SYNPO-201ENST00000307662 CTNNA1P35221 906 aaKnown RBP19.28■□□□□ 0.68
SYNPO-201ENST00000307662 KBTBD3Q8NAB2 608 aa19.28■□□□□ 0.68
SYNPO-201ENST00000307662 MICAL1Q8TDZ2 1067 aa19.28■□□□□ 0.68
SYNPO-201ENST00000307662 EYA2O00167 538 aa19.27■□□□□ 0.68
SYNPO-201ENST00000307662 FLOT1O75955 427 aa19.27■□□□□ 0.68
SYNPO-201ENST00000307662 KRT5P13647 590 aa19.27■□□□□ 0.68
SYNPO-201ENST00000307662 PLCG2P16885 1265 aa19.27■□□□□ 0.68
SYNPO-201ENST00000307662 TIMM10P62072 90 aa19.27■□□□□ 0.68
SYNPO-201ENST00000307662 IRS4O14654 1257 aaPredicted RBP19.27■□□□□ 0.68
SYNPO-201ENST00000307662 HOXB7P09629 217 aa19.27■□□□□ 0.68
SYNPO-201ENST00000307662 SLC8A1P32418 973 aa19.27■□□□□ 0.68
SYNPO-201ENST00000307662 GCKP35557 465 aa19.27■□□□□ 0.68
SYNPO-201ENST00000307662 MYSM1Q5VVJ2 828 aa19.27■□□□□ 0.68
SYNPO-201ENST00000307662 VPS52Q8N1B4 723 aa19.27■□□□□ 0.68
SYNPO-201ENST00000307662 CEP120Q8N960 986 aa19.27■□□□□ 0.68
SYNPO-201ENST00000307662 SMC1BQ8NDV3 1235 aa19.27■□□□□ 0.68
SYNPO-201ENST00000307662 RAB17Q9H0T7 212 aa19.27■□□□□ 0.68
SYNPO-201ENST00000307662 SERTAD1Q9UHV2 236 aa19.27■□□□□ 0.68
SYNPO-201ENST00000307662 RNF40O75150 1001 aa19.27■□□□□ 0.68
SYNPO-201ENST00000307662 IL2RBP14784 551 aa19.27■□□□□ 0.68
SYNPO-201ENST00000307662 RASSF2P50749 326 aa19.27■□□□□ 0.68
SYNPO-201ENST00000307662 PEX26Q7Z412 305 aa19.27■□□□□ 0.68
SYNPO-201ENST00000307662 ZNF804AQ7Z570 1209 aa19.27■□□□□ 0.68
SYNPO-201ENST00000307662 CCNT1O60563 726 aaKnown RBP19.27■□□□□ 0.67
SYNPO-201ENST00000307662 TYW1BQ6NUM6 668 aa19.27■□□□□ 0.67
SYNPO-201ENST00000307662 OR8K1Q8NGG5 319 aa19.27■□□□□ 0.67
SYNPO-201ENST00000307662 MPHOSPH6Q99547 160 aaKnown RBP19.27■□□□□ 0.67
SYNPO-201ENST00000307662 AGTPBP1Q9UPW5 1226 aa19.27■□□□□ 0.67
SYNPO-201ENST00000307662 SBNO1A3KN83 1393 aa19.26■□□□□ 0.67
SYNPO-201ENST00000307662 AKNAD1Q5T1N1 836 aa19.26■□□□□ 0.67
SYNPO-201ENST00000307662 NBPF14Q5TI25 921 aa19.26■□□□□ 0.67
SYNPO-201ENST00000307662 RABGGTAQ92696 567 aa19.26■□□□□ 0.67
SYNPO-201ENST00000307662 PDE11AQ9HCR9 933 aa19.26■□□□□ 0.67
SYNPO-201ENST00000307662 GPAA1O43292 621 aa19.26■□□□□ 0.67
SYNPO-201ENST00000307662 GUCY2FP51841 1108 aa19.26■□□□□ 0.67
SYNPO-201ENST00000307662 PHKBQ93100 1093 aa19.26■□□□□ 0.67
SYNPO-201ENST00000307662 CTTNBP2NLQ9P2B4 639 aa19.26■□□□□ 0.67
SYNPO-201ENST00000307662 PARP2Q9UGN5 583 aa19.26■□□□□ 0.67
SYNPO-201ENST00000307662 RFC4P35249 363 aa19.26■□□□□ 0.67
SYNPO-201ENST00000307662 RIPOR2Q9Y4F9 1068 aa19.26■□□□□ 0.67
SYNPO-201ENST00000307662 HYOU1Q9Y4L1 999 aa19.26■□□□□ 0.67
SYNPO-201ENST00000307662 SEPT14Q6ZU15 432 aa19.26■□□□□ 0.67
SYNPO-201ENST00000307662 RGS12O14924 1447 aa19.26■□□□□ 0.67
SYNPO-201ENST00000307662 SDCCAG8Q86SQ7 713 aaPredicted RBP19.25■□□□□ 0.67
SYNPO-201ENST00000307662 RAB3IPQ96QF0 476 aaPredicted RBP19.25■□□□□ 0.67
SYNPO-201ENST00000307662 C19orf44Q9H6X5 657 aa19.25■□□□□ 0.67
SYNPO-201ENST00000307662 RGS16O15492 202 aaPredicted RBP19.25■□□□□ 0.67
SYNPO-201ENST00000307662 PPP2R5BQ15173 497 aa19.25■□□□□ 0.67
SYNPO-201ENST00000307662 DPH6Q7L8W6 267 aa19.25■□□□□ 0.67
SYNPO-201ENST00000307662 NLRP3Q96P20 1036 aa19.25■□□□□ 0.67
SYNPO-201ENST00000307662 STK38LQ9Y2H1 464 aa19.25■□□□□ 0.67
SYNPO-201ENST00000307662 PPP1R13BQ96KQ4 1090 aa19.25■□□□□ 0.67
SYNPO-201ENST00000307662 FAM114A2Q9NRY5 505 aa19.25■□□□□ 0.67
SYNPO-201ENST00000307662 WDR44Q5JSH3 913 aa19.25■□□□□ 0.67
SYNPO-201ENST00000307662 CCDC105Q8IYK2 499 aa19.25■□□□□ 0.67
SYNPO-201ENST00000307662 TACO1Q9BSH4 297 aaKnown RBP19.25■□□□□ 0.67
SYNPO-201ENST00000307662 ZNF853P0CG23 659 aa19.24■□□□□ 0.67
SYNPO-201ENST00000307662 SF3A3Q12874 501 aaKnown RBP eCLIP19.24■□□□□ 0.67
SYNPO-201ENST00000307662 LIN9Q5TKA1 542 aa19.24■□□□□ 0.67
SYNPO-201ENST00000307662 ZNF354CQ86Y25 554 aa19.24■□□□□ 0.67
SYNPO-201ENST00000307662 TTC16Q8NEE8 873 aa19.24■□□□□ 0.67
SYNPO-201ENST00000307662 EIF4G3O43432 1585 aaKnown RBP19.24■□□□□ 0.67
SYNPO-201ENST00000307662 MRPL12P52815 198 aaKnown RBP19.24■□□□□ 0.67
SYNPO-201ENST00000307662 HAUS3Q68CZ6 603 aa19.24■□□□□ 0.67
SYNPO-201ENST00000307662 RRP15Q9Y3B9 282 aaKnown RBP19.24■□□□□ 0.67
SYNPO-201ENST00000307662 ATP1A2P50993 1020 aa19.24■□□□□ 0.67
SYNPO-201ENST00000307662 RRAGAQ7L523 313 aa19.24■□□□□ 0.67
SYNPO-201ENST00000307662 TDRD7Q8NHU6 1098 aaKnown RBP19.24■□□□□ 0.67
SYNPO-201ENST00000307662 USP28Q96RU2 1077 aa19.24■□□□□ 0.67
SYNPO-201ENST00000307662 FAM204AQ9H8W3 233 aa19.24■□□□□ 0.67
SYNPO-201ENST00000307662 RBM6P78332 1123 aaKnown RBP19.24■□□□□ 0.67
SYNPO-201ENST00000307662 FAM212AQ96EL1 285 aa19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms