RNA–Protein interactions for RNA: ENST00000265081.6

MSH3-201, Transcript of mutS homolog 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH3, Length 4,092 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3-201ENST00000265081 COL11A2P13942 1736 aaPredicted RBP12.87□□□□□ -0.35
MSH3-201ENST00000265081 SLC3A2P08195 630 aaKnown RBP12.87□□□□□ -0.35
MSH3-201ENST00000265081 KRI1Q8N9T8 703 aaKnown RBP12.87□□□□□ -0.35
MSH3-201ENST00000265081 TRIM5Q9C035 493 aa12.87□□□□□ -0.35
MSH3-201ENST00000265081 TCP11L1Q9NUJ3 509 aa12.87□□□□□ -0.35
MSH3-201ENST00000265081 DIS3L2Q8IYB7 885 aaKnown RBP12.87□□□□□ -0.35
MSH3-201ENST00000265081 HIBADHP31937 336 aaKnown RBP12.87□□□□□ -0.35
MSH3-201ENST00000265081 SYKP43405 635 aa12.87□□□□□ -0.35
MSH3-201ENST00000265081 PPP4CP60510 307 aa12.87□□□□□ -0.35
MSH3-201ENST00000265081 TRIM29Q14134 588 aa12.87□□□□□ -0.35
MSH3-201ENST00000265081 TMTC3Q6ZXV5 915 aa12.87□□□□□ -0.35
MSH3-201ENST00000265081 TRIM22Q8IYM9 498 aa12.87□□□□□ -0.35
MSH3-201ENST00000265081 FAM177A1Q8N128 213 aaPredicted RBP12.87□□□□□ -0.35
MSH3-201ENST00000265081 BCL11BQ9C0K0 894 aaPredicted RBP12.87□□□□□ -0.35
MSH3-201ENST00000265081 LEMD3Q9Y2U8 911 aa12.87□□□□□ -0.35
MSH3-201ENST00000265081 KLRG2A4D1S0 409 aaPredicted RBP12.86□□□□□ -0.35
MSH3-201ENST00000265081 BTBD18B2RXH4 712 aa12.86□□□□□ -0.35
MSH3-201ENST00000265081 CTIFO43310 598 aaKnown RBP12.86□□□□□ -0.35
MSH3-201ENST00000265081 NOVP48745 357 aa12.86□□□□□ -0.35
MSH3-201ENST00000265081 TPTE2Q6XPS3 522 aa12.86□□□□□ -0.35
MSH3-201ENST00000265081 AOPEPQ8N6M6 819 aa12.86□□□□□ -0.35
MSH3-201ENST00000265081 ERICH2A1L162 156 aa12.86□□□□□ -0.35
MSH3-201ENST00000265081 GRAPQ13588 217 aa12.86□□□□□ -0.35
MSH3-201ENST00000265081 SH3RF1Q7Z6J0 888 aa12.86□□□□□ -0.35
MSH3-201ENST00000265081 FOXP4Q8IVH2 680 aaPredicted RBP12.86□□□□□ -0.35
MSH3-201ENST00000265081 GRAPLQ8TC17 118 aaPredicted RBP12.86□□□□□ -0.35
MSH3-201ENST00000265081 RAI14Q9P0K7 980 aa12.86□□□□□ -0.35
MSH3-201ENST00000265081 UQCRHLA0A096LP55 91 aa12.86□□□□□ -0.35
MSH3-201ENST00000265081 UQCRHP07919 91 aa12.86□□□□□ -0.35
MSH3-201ENST00000265081 DHX8Q14562 1220 aaKnown RBP12.86□□□□□ -0.35
MSH3-201ENST00000265081 CT47A1Q5JQC4 288 aaPredicted RBP12.86□□□□□ -0.35
MSH3-201ENST00000265081 RCSD1Q6JBY9 416 aa12.86□□□□□ -0.35
MSH3-201ENST00000265081 C17orf53Q8N3J3 647 aaPredicted RBP12.86□□□□□ -0.35
MSH3-201ENST00000265081 SPC24Q8NBT2 197 aa12.86□□□□□ -0.35
MSH3-201ENST00000265081 GOLGA6L19H0YKK7 550 aa12.85□□□□□ -0.35
MSH3-201ENST00000265081 ACTN4O43707 911 aaKnown RBP12.85□□□□□ -0.35
MSH3-201ENST00000265081 NYAP1Q6ZVC0 841 aa12.85□□□□□ -0.35
MSH3-201ENST00000265081 AATFQ9NY61 560 aaKnown RBP eCLIP12.85□□□□□ -0.35
MSH3-201ENST00000265081 SNED1Q8TER0 1413 aa12.85□□□□□ -0.35
MSH3-201ENST00000265081 BMP6P22004 513 aa12.85□□□□□ -0.35
MSH3-201ENST00000265081 ZKSCAN3Q9BRR0 538 aa12.85□□□□□ -0.35
MSH3-201ENST00000265081 RTCBQ9Y3I0 505 aaKnown RBP12.85□□□□□ -0.35
MSH3-201ENST00000265081 M0R2N6 131 aa12.85□□□□□ -0.35
MSH3-201ENST00000265081 LONRF3Q496Y0 759 aa12.85□□□□□ -0.35
MSH3-201ENST00000265081 NBPF5PQ86XG9 351 aaPredicted RBP12.85□□□□□ -0.35
MSH3-201ENST00000265081 UBAC1Q9BSL1 405 aa12.85□□□□□ -0.35
MSH3-201ENST00000265081 CCNL1Q9UK58 526 aaPredicted RBP12.85□□□□□ -0.35
MSH3-201ENST00000265081 KCNH3Q9ULD8 1083 aa12.85□□□□□ -0.35
MSH3-201ENST00000265081 GNPATO15228 680 aa12.84□□□□□ -0.35
MSH3-201ENST00000265081 MARCKSP29966 332 aaPredicted RBP12.84□□□□□ -0.35
MSH3-201ENST00000265081 LRMPQ12912 555 aa12.84□□□□□ -0.35
MSH3-201ENST00000265081 SDF4Q9BRK5 362 aa12.84□□□□□ -0.35
MSH3-201ENST00000265081 SMTNL1A8MU46 457 aa12.84□□□□□ -0.35
MSH3-201ENST00000265081 GSDMDP57764 484 aa12.84□□□□□ -0.35
MSH3-201ENST00000265081 TXNRD3Q86VQ6 643 aa12.84□□□□□ -0.35
MSH3-201ENST00000265081 TRIML1Q8N9V2 468 aa12.84□□□□□ -0.35
MSH3-201ENST00000265081 OXER1Q8TDS5 423 aa12.84□□□□□ -0.35
MSH3-201ENST00000265081 CLIC6Q96NY7 704 aa12.84□□□□□ -0.35
MSH3-201ENST00000265081 SIPA1L1O43166 1804 aa12.84□□□□□ -0.35
MSH3-201ENST00000265081 IL1R1P14778 569 aa12.84□□□□□ -0.35
MSH3-201ENST00000265081 MORC3Q14149 939 aa12.84□□□□□ -0.35
MSH3-201ENST00000265081 SYCP1Q15431 976 aa12.84□□□□□ -0.35
MSH3-201ENST00000265081 CRNKL1Q9BZJ0 848 aaKnown RBP12.84□□□□□ -0.35
MSH3-201ENST00000265081 TMX1Q9H3N1 280 aa12.84□□□□□ -0.35
MSH3-201ENST00000265081 PODXL2Q9NZ53 605 aa12.84□□□□□ -0.35
MSH3-201ENST00000265081 A0A087WWV3 80 aa12.83□□□□□ -0.35
MSH3-201ENST00000265081 ZPR1O75312 459 aa12.83□□□□□ -0.35
MSH3-201ENST00000265081 SPTY2D1Q68D10 685 aaPredicted RBP12.83□□□□□ -0.35
MSH3-201ENST00000265081 CERS3Q8IU89 383 aa12.83□□□□□ -0.35
MSH3-201ENST00000265081 SH3GLB2Q9NR46 395 aa12.83□□□□□ -0.35
MSH3-201ENST00000265081 KCNJ14Q9UNX9 436 aa12.83□□□□□ -0.35
MSH3-201ENST00000265081 CEP131Q9UPN4 1083 aa12.83□□□□□ -0.35
MSH3-201ENST00000265081 PCDHB6Q9Y5E3 794 aa12.83□□□□□ -0.35
MSH3-201ENST00000265081 C12orf60Q5U649 245 aa12.83□□□□□ -0.36
MSH3-201ENST00000265081 C8orf37Q96NL8 207 aa12.83□□□□□ -0.36
MSH3-201ENST00000265081 ABCF2Q9UG63 623 aa12.83□□□□□ -0.36
MSH3-201ENST00000265081 MYH8P13535 1937 aa12.83□□□□□ -0.36
MSH3-201ENST00000265081 PLIN4Q96Q06 1357 aa12.83□□□□□ -0.36
MSH3-201ENST00000265081 PRDX5P30044 214 aa12.83□□□□□ -0.36
MSH3-201ENST00000265081 EVX2Q03828 476 aa12.83□□□□□ -0.36
MSH3-201ENST00000265081 ERCC4Q92889 916 aaPredicted RBP12.83□□□□□ -0.36
MSH3-201ENST00000265081 USP21Q9UK80 565 aa12.83□□□□□ -0.36
MSH3-201ENST00000265081 IQSEC3Q9UPP2 1182 aaPredicted RBP12.83□□□□□ -0.36
MSH3-201ENST00000265081 XDHP47989 1333 aa12.83□□□□□ -0.36
MSH3-201ENST00000265081 CYP2D7A0A087X1C5 515 aa12.83□□□□□ -0.36
MSH3-201ENST00000265081 PLEKHA8P1O95397 391 aa12.83□□□□□ -0.36
MSH3-201ENST00000265081 BMP15O95972 392 aa12.83□□□□□ -0.36
MSH3-201ENST00000265081 ZNF18P17022 549 aa12.83□□□□□ -0.36
MSH3-201ENST00000265081 KCNQ4P56696 695 aa12.83□□□□□ -0.36
MSH3-201ENST00000265081 GRIN1Q05586 938 aa12.83□□□□□ -0.36
MSH3-201ENST00000265081 SAFBQ15424 915 aaKnown RBP eCLIP12.83□□□□□ -0.36
MSH3-201ENST00000265081 EARS2Q5JPH6 523 aaKnown RBP12.83□□□□□ -0.36
MSH3-201ENST00000265081 IFIT1BQ5T764 474 aaKnown RBP12.83□□□□□ -0.36
MSH3-201ENST00000265081 CATIPQ7Z7H3 387 aa12.83□□□□□ -0.36
MSH3-201ENST00000265081 TRAPPC10P48553 1259 aa12.82□□□□□ -0.36
MSH3-201ENST00000265081 NR5A1Q13285 461 aa12.82□□□□□ -0.36
MSH3-201ENST00000265081 USP17L12C9JPN9 530 aa12.82□□□□□ -0.36
MSH3-201ENST00000265081 USP17L21D6R901 530 aa12.82□□□□□ -0.36
MSH3-201ENST00000265081 HOXA10P31260 410 aaPredicted RBP12.82□□□□□ -0.36
MSH3-201ENST00000265081 KRT2P35908 639 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms