RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 HOXA10P31260 410 aaPredicted RBP13.28□□□□□ -0.28
VPS4A-201ENST00000254950 TOB2Q14106 344 aaPredicted RBP13.28□□□□□ -0.28
VPS4A-201ENST00000254950 TSR1Q2NL82 804 aaKnown RBP13.28□□□□□ -0.28
VPS4A-201ENST00000254950 DYNLL2Q96FJ2 89 aa13.28□□□□□ -0.28
VPS4A-201ENST00000254950 PYM1Q9BRP8 204 aaKnown RBP13.28□□□□□ -0.28
VPS4A-201ENST00000254950 SYKP43405 635 aa13.28□□□□□ -0.28
VPS4A-201ENST00000254950 MB21D2Q8IYB1 491 aaPredicted RBP13.28□□□□□ -0.28
VPS4A-201ENST00000254950 GPHNQ9NQX3 736 aaPredicted RBP13.28□□□□□ -0.28
VPS4A-201ENST00000254950 ZNF277Q9NRM2 450 aaPredicted RBP13.28□□□□□ -0.28
VPS4A-201ENST00000254950 DACT1Q9NYF0 836 aa13.28□□□□□ -0.28
VPS4A-201ENST00000254950 TM4SF1P30408 202 aa13.28□□□□□ -0.28
VPS4A-201ENST00000254950 GPR162Q16538 588 aa13.28□□□□□ -0.28
VPS4A-201ENST00000254950 MTA3Q9BTC8 594 aa13.28□□□□□ -0.28
VPS4A-201ENST00000254950 MRPL12P52815 198 aaKnown RBP13.28□□□□□ -0.28
VPS4A-201ENST00000254950 PDILTQ8N807 584 aa13.28□□□□□ -0.28
VPS4A-201ENST00000254950 CYP2D6P10635 497 aa13.27□□□□□ -0.28
VPS4A-201ENST00000254950 CFAP100Q494V2 611 aa13.27□□□□□ -0.28
VPS4A-201ENST00000254950 STRIP1Q5VSL9 837 aa13.27□□□□□ -0.28
VPS4A-201ENST00000254950 CSRNP1Q96S65 589 aa13.27□□□□□ -0.28
VPS4A-201ENST00000254950 PICK1Q9NRD5 415 aa13.27□□□□□ -0.28
VPS4A-201ENST00000254950 PI4KBQ9UBF8 816 aa13.27□□□□□ -0.28
VPS4A-201ENST00000254950 COL18A1P39060 1754 aa13.27□□□□□ -0.29
VPS4A-201ENST00000254950 hCG_1642624A0A1W2PR95 340 aa13.27□□□□□ -0.29
VPS4A-201ENST00000254950 ANO1Q5XXA6 986 aa13.27□□□□□ -0.29
VPS4A-201ENST00000254950 STOX1Q6ZVD7 989 aa13.27□□□□□ -0.29
VPS4A-201ENST00000254950 PANK2Q9BZ23 570 aa13.27□□□□□ -0.29
VPS4A-201ENST00000254950 SPON1Q9HCB6 807 aa13.27□□□□□ -0.29
VPS4A-201ENST00000254950 ZSCAN23Q3MJ62 389 aa13.27□□□□□ -0.29
VPS4A-201ENST00000254950 FBXO18Q8NFZ0 1043 aa13.27□□□□□ -0.29
VPS4A-201ENST00000254950 ALDH8A1Q9H2A2 487 aaPredicted RBP13.27□□□□□ -0.29
VPS4A-201ENST00000254950 NEDD4P46934 1319 aa13.27□□□□□ -0.29
VPS4A-201ENST00000254950 DPEP1P16444 411 aa13.26□□□□□ -0.29
VPS4A-201ENST00000254950 CDK8P49336 464 aa13.26□□□□□ -0.29
VPS4A-201ENST00000254950 DPY19L2Q6NUT2 758 aa13.26□□□□□ -0.29
VPS4A-201ENST00000254950 KANK3Q6NY19 840 aa13.26□□□□□ -0.29
VPS4A-201ENST00000254950 CTR9Q6PD62 1173 aa13.26□□□□□ -0.29
VPS4A-201ENST00000254950 TXNRD3Q86VQ6 643 aa13.26□□□□□ -0.29
VPS4A-201ENST00000254950 CMTR1Q8N1G2 835 aaKnown RBP13.26□□□□□ -0.29
VPS4A-201ENST00000254950 SMARCC2Q8TAQ2 1214 aa13.26□□□□□ -0.29
VPS4A-201ENST00000254950 ZHX3Q9H4I2 956 aa13.26□□□□□ -0.29
VPS4A-201ENST00000254950 KCNJ14Q9UNX9 436 aa13.26□□□□□ -0.29
VPS4A-201ENST00000254950 KLRF2D3W0D1 207 aa13.26□□□□□ -0.29
VPS4A-201ENST00000254950 ICA1Q05084 483 aa13.26□□□□□ -0.29
VPS4A-201ENST00000254950 PCMTD1Q96MG8 357 aaPredicted RBP13.26□□□□□ -0.29
VPS4A-201ENST00000254950 VPS54Q9P1Q0 977 aa13.26□□□□□ -0.29
VPS4A-201ENST00000254950 POLLQ9UGP5 575 aa13.26□□□□□ -0.29
VPS4A-201ENST00000254950 CCDC173Q0VFZ6 552 aa13.26□□□□□ -0.29
VPS4A-201ENST00000254950 ABCB5Q2M3G0 1257 aa13.26□□□□□ -0.29
VPS4A-201ENST00000254950 DCAF15Q66K64 600 aa13.26□□□□□ -0.29
VPS4A-201ENST00000254950 LRRC47Q8N1G4 583 aaKnown RBP13.26□□□□□ -0.29
VPS4A-201ENST00000254950 BRPF3Q9ULD4 1205 aa13.26□□□□□ -0.29
VPS4A-201ENST00000254950 LRP6O75581 1613 aa13.26□□□□□ -0.29
VPS4A-201ENST00000254950 IFNAR1P17181 557 aa13.25□□□□□ -0.29
VPS4A-201ENST00000254950 DGKHQ86XP1 1220 aa13.25□□□□□ -0.29
VPS4A-201ENST00000254950 FOXP4Q8IVH2 680 aaPredicted RBP13.25□□□□□ -0.29
VPS4A-201ENST00000254950 LEO1Q8WVC0 666 aaPredicted RBP13.25□□□□□ -0.29
VPS4A-201ENST00000254950 RNF26Q9BY78 433 aaPredicted RBP13.25□□□□□ -0.29
VPS4A-201ENST00000254950 MTFR1LQ9H019 292 aa13.25□□□□□ -0.29
VPS4A-201ENST00000254950 GLT8D2Q9H1C3 349 aa13.25□□□□□ -0.29
VPS4A-201ENST00000254950 SPDYE3A6NKU9 549 aa13.25□□□□□ -0.29
VPS4A-201ENST00000254950 SMTNL1A8MU46 457 aa13.25□□□□□ -0.29
VPS4A-201ENST00000254950 CYB5R4Q7L1T6 521 aa13.25□□□□□ -0.29
VPS4A-201ENST00000254950 CALML4Q96GE6 196 aa13.25□□□□□ -0.29
VPS4A-201ENST00000254950 INCENPQ9NQS7 918 aa13.25□□□□□ -0.29
VPS4A-201ENST00000254950 RIC1Q4ADV7 1423 aa13.25□□□□□ -0.29
VPS4A-201ENST00000254950 ZYXQ15942 572 aaKnown RBP13.25□□□□□ -0.29
VPS4A-201ENST00000254950 FILIP1LQ4L180 1135 aa13.25□□□□□ -0.29
VPS4A-201ENST00000254950 MYSM1Q5VVJ2 828 aa13.25□□□□□ -0.29
VPS4A-201ENST00000254950 KRI1Q8N9T8 703 aaKnown RBP13.25□□□□□ -0.29
VPS4A-201ENST00000254950 DAGLAQ9Y4D2 1042 aa13.25□□□□□ -0.29
VPS4A-201ENST00000254950 PKD1L3Q7Z443 1732 aa13.25□□□□□ -0.29
VPS4A-201ENST00000254950 WDR78Q5VTH9 848 aa13.24□□□□□ -0.29
VPS4A-201ENST00000254950 WDHD1O75717 1129 aaPredicted RBP13.24□□□□□ -0.29
VPS4A-201ENST00000254950 DHX8Q14562 1220 aaKnown RBP13.24□□□□□ -0.29
VPS4A-201ENST00000254950 TDRD3Q9H7E2 651 aaKnown RBP13.24□□□□□ -0.29
VPS4A-201ENST00000254950 SCG2P13521 617 aa13.24□□□□□ -0.29
VPS4A-201ENST00000254950 KANSL2Q9H9L4 492 aa13.24□□□□□ -0.29
VPS4A-201ENST00000254950 LMBRD1Q9NUN5 540 aa13.24□□□□□ -0.29
VPS4A-201ENST00000254950 ZNRF3Q9ULT6 936 aa13.24□□□□□ -0.29
VPS4A-201ENST00000254950 PDS5AQ29RF7 1337 aaKnown RBP13.24□□□□□ -0.29
VPS4A-201ENST00000254950 TTLL1O95922 423 aa13.24□□□□□ -0.29
VPS4A-201ENST00000254950 MCM7P33993 719 aa13.24□□□□□ -0.29
VPS4A-201ENST00000254950 CACNB3P54284 484 aa13.24□□□□□ -0.29
VPS4A-201ENST00000254950 EXOSC10Q01780 885 aaKnown RBP13.24□□□□□ -0.29
VPS4A-201ENST00000254950 GOPCQ9HD26 462 aa13.24□□□□□ -0.29
VPS4A-201ENST00000254950 MAGEC2Q9UBF1 373 aaPredicted RBP13.24□□□□□ -0.29
VPS4A-201ENST00000254950 ORC4O43929 436 aa13.23□□□□□ -0.29
VPS4A-201ENST00000254950 YEATS4O95619 227 aa13.23□□□□□ -0.29
VPS4A-201ENST00000254950 CAVIN2O95810 425 aa13.23□□□□□ -0.29
VPS4A-201ENST00000254950 SERPINC1P01008 464 aa13.23□□□□□ -0.29
VPS4A-201ENST00000254950 C12orf60Q5U649 245 aa13.23□□□□□ -0.29
VPS4A-201ENST00000254950 LRSAM1Q6UWE0 723 aa13.23□□□□□ -0.29
VPS4A-201ENST00000254950 PIK3AP1Q6ZUJ8 805 aa13.23□□□□□ -0.29
VPS4A-201ENST00000254950 EPB41L4AQ9HCS5 686 aaPredicted RBP13.23□□□□□ -0.29
VPS4A-201ENST00000254950 PODXL2Q9NZ53 605 aa13.23□□□□□ -0.29
VPS4A-201ENST00000254950 STX1AQ16623 288 aa13.23□□□□□ -0.29
VPS4A-201ENST00000254950 SBK1Q52WX2 424 aa13.23□□□□□ -0.29
VPS4A-201ENST00000254950 FMNL1O95466 1100 aaPredicted RBP13.23□□□□□ -0.29
VPS4A-201ENST00000254950 GOLGA8HP0CJ92 632 aa13.23□□□□□ -0.29
VPS4A-201ENST00000254950 SLFN13Q68D06 897 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms