RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 USP17L1Q7RTZ2 530 aa17.33■□□□□ 0.36
CCDC47-201ENST00000225726 NUP133Q8WUM0 1156 aa17.33■□□□□ 0.36
CCDC47-201ENST00000225726 PHKBQ93100 1093 aa17.33■□□□□ 0.36
CCDC47-201ENST00000225726 MKNK2Q9HBH9 465 aa17.33■□□□□ 0.36
CCDC47-201ENST00000225726 KCNQ5Q9NR82 932 aa17.33■□□□□ 0.36
CCDC47-201ENST00000225726 C16orf86Q6ZW13 317 aa17.32■□□□□ 0.36
CCDC47-201ENST00000225726 WASF1Q92558 559 aa17.32■□□□□ 0.36
CCDC47-201ENST00000225726 FSD2A1L4K1 749 aa17.32■□□□□ 0.36
CCDC47-201ENST00000225726 GOLGA6L3A6NEY3 463 aa17.31■□□□□ 0.36
CCDC47-201ENST00000225726 SCNN1DP51172 638 aa17.31■□□□□ 0.36
CCDC47-201ENST00000225726 TTC6Q86TZ1 520 aa17.31■□□□□ 0.36
CCDC47-201ENST00000225726 SYAP1Q96A49 352 aaPredicted RBP17.31■□□□□ 0.36
CCDC47-201ENST00000225726 PSMD1Q99460 953 aa17.31■□□□□ 0.36
CCDC47-201ENST00000225726 SLC26A6Q9BXS9 759 aa17.31■□□□□ 0.36
CCDC47-201ENST00000225726 RBM28Q9NW13 759 aaKnown RBP17.31■□□□□ 0.36
CCDC47-201ENST00000225726 RBM27Q9P2N5 1060 aaKnown RBP17.31■□□□□ 0.36
CCDC47-201ENST00000225726 CFAP45Q9UL16 551 aa17.31■□□□□ 0.36
CCDC47-201ENST00000225726 PSME4Q14997 1843 aa17.31■□□□□ 0.36
CCDC47-201ENST00000225726 HDLBPQ00341 1268 aaKnown RBP17.31■□□□□ 0.36
CCDC47-201ENST00000225726 TFAP4Q01664 338 aa17.31■□□□□ 0.36
CCDC47-201ENST00000225726 ZSCAN23Q3MJ62 389 aa17.31■□□□□ 0.36
CCDC47-201ENST00000225726 TCP11L1Q9NUJ3 509 aa17.31■□□□□ 0.36
CCDC47-201ENST00000225726 PPIP5K2O43314 1243 aa17.31■□□□□ 0.36
CCDC47-201ENST00000225726 TRIM22Q8IYM9 498 aa17.31■□□□□ 0.36
CCDC47-201ENST00000225726 SPATA32Q96LK8 384 aa17.31■□□□□ 0.36
CCDC47-201ENST00000225726 ZNF396Q96N95 335 aaPredicted RBP17.31■□□□□ 0.36
CCDC47-201ENST00000225726 TMEM63CQ9P1W3 806 aa17.31■□□□□ 0.36
CCDC47-201ENST00000225726 CRKP46108 304 aa17.3■□□□□ 0.36
CCDC47-201ENST00000225726 ZNF445P59923 1031 aa17.3■□□□□ 0.36
CCDC47-201ENST00000225726 OTUD7BQ6GQQ9 843 aa17.3■□□□□ 0.36
CCDC47-201ENST00000225726 NBPF11Q86T75 865 aa17.3■□□□□ 0.36
CCDC47-201ENST00000225726 ZNF444Q8N0Y2 327 aaPredicted RBP17.3■□□□□ 0.36
CCDC47-201ENST00000225726 LEO1Q8WVC0 666 aaPredicted RBP17.3■□□□□ 0.36
CCDC47-201ENST00000225726 USP40Q9NVE5 1235 aa17.3■□□□□ 0.36
CCDC47-201ENST00000225726 TFIP11Q9UBB9 837 aaKnown RBP17.3■□□□□ 0.36
CCDC47-201ENST00000225726 NMT2O60551 498 aa17.3■□□□□ 0.36
CCDC47-201ENST00000225726 L1TD1Q5T7N2 865 aaKnown RBP17.3■□□□□ 0.36
CCDC47-201ENST00000225726 CRACR2BQ8N4Y2 399 aaPredicted RBP17.3■□□□□ 0.36
CCDC47-201ENST00000225726 ANKS1AQ92625 1134 aa17.3■□□□□ 0.36
CCDC47-201ENST00000225726 ZDHHC15Q96MV8 337 aa17.3■□□□□ 0.36
CCDC47-201ENST00000225726 ZBTB7AO95365 584 aa17.3■□□□□ 0.36
CCDC47-201ENST00000225726 POLD1P28340 1107 aa17.3■□□□□ 0.36
CCDC47-201ENST00000225726 CDK8P49336 464 aa17.3■□□□□ 0.36
CCDC47-201ENST00000225726 TGFB2P61812 414 aa17.3■□□□□ 0.36
CCDC47-201ENST00000225726 BRAPQ7Z569 592 aa17.3■□□□□ 0.36
CCDC47-201ENST00000225726 DGKHQ86XP1 1220 aa17.3■□□□□ 0.36
CCDC47-201ENST00000225726 MTFR1LQ9H019 292 aa17.3■□□□□ 0.36
CCDC47-201ENST00000225726 RASA1P20936 1047 aa17.29■□□□□ 0.36
CCDC47-201ENST00000225726 TROAPQ12815 778 aa17.29■□□□□ 0.36
CCDC47-201ENST00000225726 APOBEC3HQ6NTF7 200 aaKnown RBP17.29■□□□□ 0.36
CCDC47-201ENST00000225726 ILDR1Q86SU0 546 aaPredicted RBP17.29■□□□□ 0.36
CCDC47-201ENST00000225726 WDHD1O75717 1129 aaPredicted RBP17.29■□□□□ 0.36
CCDC47-201ENST00000225726 TRIM29Q14134 588 aa17.29■□□□□ 0.36
CCDC47-201ENST00000225726 SOGA3Q5TF21 947 aa17.29■□□□□ 0.36
CCDC47-201ENST00000225726 CDC42EP5Q6NZY7 148 aa17.29■□□□□ 0.36
CCDC47-201ENST00000225726 AIFM3Q96NN9 605 aa17.29■□□□□ 0.36
CCDC47-201ENST00000225726 TSPY3P0CV98 308 aa17.29■□□□□ 0.36
CCDC47-201ENST00000225726 TSPY8P0CW00 308 aa17.29■□□□□ 0.36
CCDC47-201ENST00000225726 RCSD1Q6JBY9 416 aa17.29■□□□□ 0.36
CCDC47-201ENST00000225726 SLC44A5Q8NCS7 719 aa17.29■□□□□ 0.36
CCDC47-201ENST00000225726 DEXIO95424 95 aa17.28■□□□□ 0.36
CCDC47-201ENST00000225726 KIF23Q02241 960 aaPredicted RBP17.28■□□□□ 0.36
CCDC47-201ENST00000225726 PICALMQ13492 652 aa17.28■□□□□ 0.36
CCDC47-201ENST00000225726 KRT40Q6A162 431 aa17.28■□□□□ 0.36
CCDC47-201ENST00000225726 VPS33BQ9H267 617 aa17.28■□□□□ 0.36
CCDC47-201ENST00000225726 IL17RBQ9NRM6 502 aa17.28■□□□□ 0.36
CCDC47-201ENST00000225726 KIAA0825Q8IV33 1275 aa17.28■□□□□ 0.36
CCDC47-201ENST00000225726 RNF26Q9BY78 433 aaPredicted RBP17.28■□□□□ 0.36
CCDC47-201ENST00000225726 KAT14Q9H8E8 782 aa17.27■□□□□ 0.36
CCDC47-201ENST00000225726 DDX4Q9NQI0 724 aaKnown RBP17.27■□□□□ 0.36
CCDC47-201ENST00000225726 MYH6P13533 1939 aa17.27■□□□□ 0.36
CCDC47-201ENST00000225726 GJB4Q9NTQ9 266 aa17.27■□□□□ 0.36
CCDC47-201ENST00000225726 SERPINA10Q9UK55 444 aa17.27■□□□□ 0.36
CCDC47-201ENST00000225726 YDJCA8MPS7 323 aa17.27■□□□□ 0.35
CCDC47-201ENST00000225726 CTCFLQ8NI51 663 aaPredicted RBP17.27■□□□□ 0.35
CCDC47-201ENST00000225726 NAP1L5Q96NT1 182 aaPredicted RBP17.27■□□□□ 0.35
CCDC47-201ENST00000225726 MAP3K14Q99558 947 aa17.27■□□□□ 0.35
CCDC47-201ENST00000225726 ATF5Q9Y2D1 282 aaPredicted RBP17.27■□□□□ 0.35
CCDC47-201ENST00000225726 TMTC3Q6ZXV5 915 aa17.26■□□□□ 0.35
CCDC47-201ENST00000225726 OSBPL5Q9H0X9 879 aaPredicted RBP17.26■□□□□ 0.35
CCDC47-201ENST00000225726 PIM2Q9P1W9 311 aa17.26■□□□□ 0.35
CCDC47-201ENST00000225726 FUT2Q10981 343 aa17.26■□□□□ 0.35
CCDC47-201ENST00000225726 RCOR1Q9UKL0 485 aa17.26■□□□□ 0.35
CCDC47-201ENST00000225726 NEDD1Q8NHV4 660 aa17.26■□□□□ 0.35
CCDC47-201ENST00000225726 KIF28PB7ZC32 967 aa17.25■□□□□ 0.35
CCDC47-201ENST00000225726 PRPF3O43395 683 aaKnown RBP17.25■□□□□ 0.35
CCDC47-201ENST00000225726 GUCY1A2P33402 732 aa17.25■□□□□ 0.35
CCDC47-201ENST00000225726 AKAP17AQ02040 695 aaKnown RBP17.25■□□□□ 0.35
CCDC47-201ENST00000225726 CCDC183Q5T5S1 534 aa17.25■□□□□ 0.35
CCDC47-201ENST00000225726 GAS2L3Q86XJ1 694 aa17.25■□□□□ 0.35
CCDC47-201ENST00000225726 CMTR1Q8N1G2 835 aaKnown RBP17.25■□□□□ 0.35
CCDC47-201ENST00000225726 USP28Q96RU2 1077 aa17.25■□□□□ 0.35
CCDC47-201ENST00000225726 GABPAQ06546 454 aa17.25■□□□□ 0.35
CCDC47-201ENST00000225726 BRCA1P38398 1863 aaKnown RBP17.25■□□□□ 0.35
CCDC47-201ENST00000225726 MYO3BQ8WXR4 1341 aa17.25■□□□□ 0.35
CCDC47-201ENST00000225726 PLIN4Q96Q06 1357 aa17.25■□□□□ 0.35
CCDC47-201ENST00000225726 GOLGA6L4A6NEF3 574 aa17.24■□□□□ 0.35
CCDC47-201ENST00000225726 PLEKHA8P1O95397 391 aa17.24■□□□□ 0.35
CCDC47-201ENST00000225726 KIF5BP33176 963 aa17.24■□□□□ 0.35
CCDC47-201ENST00000225726 CCDC82Q8N4S0 544 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms