RNA–Protein interactions for RNA: ENST00000642137.1

LINC00339-213, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 222 nt, Biotype transcribed processed pseudogene, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-213ENST00000642137 MAP1SQ66K74 1059 aaPredicted RBP14.63□□□□□ -0.07
LINC00339-213ENST00000642137 CHADLQ6NUI6 762 aa14.63□□□□□ -0.07
LINC00339-213ENST00000642137 CSRNP1Q96S65 589 aa14.63□□□□□ -0.07
LINC00339-213ENST00000642137 HERC5Q9UII4 1024 aaKnown RBP14.63□□□□□ -0.07
LINC00339-213ENST00000642137 SERPINB13Q9UIV8 391 aa14.63□□□□□ -0.07
LINC00339-213ENST00000642137 DDX60LQ5H9U9 1706 aaKnown RBP14.63□□□□□ -0.07
LINC00339-213ENST00000642137 ZKSCAN1P17029 563 aaPredicted RBP14.62□□□□□ -0.07
LINC00339-213ENST00000642137 HAND2P61296 217 aa14.62□□□□□ -0.07
LINC00339-213ENST00000642137 PDE4BQ07343 736 aa14.62□□□□□ -0.07
LINC00339-213ENST00000642137 AKNAD1Q5T1N1 836 aa14.62□□□□□ -0.07
LINC00339-213ENST00000642137 MFSD6Q6ZSS7 791 aa14.62□□□□□ -0.07
LINC00339-213ENST00000642137 C16orf86Q6ZW13 317 aa14.62□□□□□ -0.07
LINC00339-213ENST00000642137 ZNF784Q8NCA9 323 aaPredicted RBP14.62□□□□□ -0.07
LINC00339-213ENST00000642137 STAG1Q8WVM7 1258 aa14.62□□□□□ -0.07
LINC00339-213ENST00000642137 GLIS2Q9BZE0 524 aaPredicted RBP14.62□□□□□ -0.07
LINC00339-213ENST00000642137 C22orf23Q9BZE7 217 aa14.62□□□□□ -0.07
LINC00339-213ENST00000642137 RNF41Q9H4P4 317 aaPredicted RBP14.62□□□□□ -0.07
LINC00339-213ENST00000642137 ZNF287Q9HBT7 754 aa14.62□□□□□ -0.07
LINC00339-213ENST00000642137 SWAP70Q9UH65 585 aa14.62□□□□□ -0.07
LINC00339-213ENST00000642137 ROBO3Q96MS0 1386 aa14.61□□□□□ -0.07
LINC00339-213ENST00000642137 ADM5C9JUS6 153 aa14.61□□□□□ -0.07
LINC00339-213ENST00000642137 SMIM22K7EJ46 135 aa14.61□□□□□ -0.07
LINC00339-213ENST00000642137 CDK8P49336 464 aa14.61□□□□□ -0.07
LINC00339-213ENST00000642137 RBM25P49756 843 aaKnown RBP14.61□□□□□ -0.07
LINC00339-213ENST00000642137 NT5C2P49902 561 aa14.61□□□□□ -0.07
LINC00339-213ENST00000642137 ANAPC15P60006 121 aa14.61□□□□□ -0.07
LINC00339-213ENST00000642137 EVX2Q03828 476 aa14.61□□□□□ -0.07
LINC00339-213ENST00000642137 KRT32Q14532 448 aa14.61□□□□□ -0.07
LINC00339-213ENST00000642137 SLC4A8Q2Y0W8 1093 aa14.61□□□□□ -0.07
LINC00339-213ENST00000642137 PRAMEF18Q5VWM3 479 aa14.61□□□□□ -0.07
LINC00339-213ENST00000642137 RASEFQ8IZ41 740 aa14.61□□□□□ -0.07
LINC00339-213ENST00000642137 CRACR2BQ8N4Y2 399 aaPredicted RBP14.61□□□□□ -0.07
LINC00339-213ENST00000642137 IL17RAQ96F46 866 aa14.61□□□□□ -0.07
LINC00339-213ENST00000642137 DYNLL2Q96FJ2 89 aa14.61□□□□□ -0.07
LINC00339-213ENST00000642137 TRIM34Q9BYJ4 488 aa14.61□□□□□ -0.07
LINC00339-213ENST00000642137 LAMB1P07942 1786 aa14.6□□□□□ -0.07
LINC00339-213ENST00000642137 LAMA4Q16363 1823 aa14.6□□□□□ -0.07
LINC00339-213ENST00000642137 E7EWF7 191 aa14.6□□□□□ -0.07
LINC00339-213ENST00000642137 ITGBL1O95965 494 aaPredicted RBP14.6□□□□□ -0.07
LINC00339-213ENST00000642137 DCAF15Q66K64 600 aa14.6□□□□□ -0.07
LINC00339-213ENST00000642137 TATDN1Q6P1N9 297 aa14.6□□□□□ -0.07
LINC00339-213ENST00000642137 CDAN1Q8IWY9 1227 aa14.6□□□□□ -0.07
LINC00339-213ENST00000642137 CDCA5Q96FF9 252 aa14.6□□□□□ -0.07
LINC00339-213ENST00000642137 NBPF3Q9H094 633 aa14.6□□□□□ -0.07
LINC00339-213ENST00000642137 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.6□□□□□ -0.07
LINC00339-213ENST00000642137 MKNK2Q9HBH9 465 aa14.6□□□□□ -0.07
LINC00339-213ENST00000642137 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.6□□□□□ -0.07
LINC00339-213ENST00000642137 SNX14Q9Y5W7 946 aa14.6□□□□□ -0.07
LINC00339-213ENST00000642137 TACC3Q9Y6A5 838 aa14.6□□□□□ -0.07
LINC00339-213ENST00000642137 SIPA1L1O43166 1804 aa14.59□□□□□ -0.07
LINC00339-213ENST00000642137 ORC4O43929 436 aa14.59□□□□□ -0.07
LINC00339-213ENST00000642137 TOMM70O94826 608 aa14.59□□□□□ -0.07
LINC00339-213ENST00000642137 NF2P35240 595 aa14.59□□□□□ -0.07
LINC00339-213ENST00000642137 TRDNQ13061 729 aa14.59□□□□□ -0.07
LINC00339-213ENST00000642137 MIGA2Q7L4E1 593 aa14.59□□□□□ -0.07
LINC00339-213ENST00000642137 TBC1D10CQ8IV04 446 aa14.59□□□□□ -0.07
LINC00339-213ENST00000642137 ZNF444Q8N0Y2 327 aaPredicted RBP14.59□□□□□ -0.07
LINC00339-213ENST00000642137 NCOA7Q8NI08 942 aa14.59□□□□□ -0.07
LINC00339-213ENST00000642137 RBM46Q8TBY0 533 aaKnown RBP14.59□□□□□ -0.07
LINC00339-213ENST00000642137 CCDC17Q96LX7 622 aa14.59□□□□□ -0.07
LINC00339-213ENST00000642137 KRT23Q9C075 422 aa14.59□□□□□ -0.07
LINC00339-213ENST00000642137 CNNM2Q9H8M5 875 aa14.59□□□□□ -0.07
LINC00339-213ENST00000642137 INCENPQ9NQS7 918 aa14.59□□□□□ -0.07
LINC00339-213ENST00000642137 PSMA5P28066 241 aa14.58□□□□□ -0.08
LINC00339-213ENST00000642137 SHMT1P34896 483 aa14.58□□□□□ -0.08
LINC00339-213ENST00000642137 DLK2Q6UY11 383 aa14.58□□□□□ -0.08
LINC00339-213ENST00000642137 STOX1Q6ZVD7 989 aa14.58□□□□□ -0.08
LINC00339-213ENST00000642137 STK11IPQ8N1F8 1099 aa14.58□□□□□ -0.08
LINC00339-213ENST00000642137 SMC1BQ8NDV3 1235 aa14.58□□□□□ -0.08
LINC00339-213ENST00000642137 TBC1D32Q96NH3 1257 aa14.58□□□□□ -0.08
LINC00339-213ENST00000642137 NEK1Q96PY6 1258 aa14.58□□□□□ -0.08
LINC00339-213ENST00000642137 ZNF341Q9BYN7 854 aa14.58□□□□□ -0.08
LINC00339-213ENST00000642137 TM6SF1Q9BZW5 370 aa14.58□□□□□ -0.08
LINC00339-213ENST00000642137 DNAJC18Q9H819 358 aa14.58□□□□□ -0.08
LINC00339-213ENST00000642137 ZNF112Q9UJU3 913 aa14.58□□□□□ -0.08
LINC00339-213ENST00000642137 TAF6LQ9Y6J9 622 aa14.58□□□□□ -0.08
LINC00339-213ENST00000642137 PHF20L1A8MW92 1017 aa14.57□□□□□ -0.08
LINC00339-213ENST00000642137 PPP1R12BO60237 982 aaPredicted RBP14.57□□□□□ -0.08
LINC00339-213ENST00000642137 USP2O75604 605 aaPredicted RBP14.57□□□□□ -0.08
LINC00339-213ENST00000642137 HMGB1P09429 215 aaKnown RBP14.57□□□□□ -0.08
LINC00339-213ENST00000642137 SLURP2P0DP57 97 aa14.57□□□□□ -0.08
LINC00339-213ENST00000642137 RASA1P20936 1047 aa14.57□□□□□ -0.08
LINC00339-213ENST00000642137 ADCK5Q3MIX3 580 aa14.57□□□□□ -0.08
LINC00339-213ENST00000642137 CERKLQ49MI3 558 aaPredicted RBP14.57□□□□□ -0.08
LINC00339-213ENST00000642137 SLC44A5Q8NCS7 719 aa14.57□□□□□ -0.08
LINC00339-213ENST00000642137 ESR2Q92731 530 aa14.57□□□□□ -0.08
LINC00339-213ENST00000642137 TRAF5O00463 557 aa14.56□□□□□ -0.08
LINC00339-213ENST00000642137 PRDM1O75626 825 aa14.56□□□□□ -0.08
LINC00339-213ENST00000642137 MAP3K11Q16584 847 aa14.56□□□□□ -0.08
LINC00339-213ENST00000642137 RALYLQ86SE5 291 aaKnown RBP14.56□□□□□ -0.08
LINC00339-213ENST00000642137 IL27Q8NEV9 243 aa14.56□□□□□ -0.08
LINC00339-213ENST00000642137 KLRG1Q96E93 195 aa14.56□□□□□ -0.08
LINC00339-213ENST00000642137 TOMM22Q9NS69 142 aa14.56□□□□□ -0.08
LINC00339-213ENST00000642137 GINM1Q9NU53 330 aa14.56□□□□□ -0.08
LINC00339-213ENST00000642137 MYH8P13535 1937 aa14.55□□□□□ -0.08
LINC00339-213ENST00000642137 UNCXA6NJT0 531 aa14.55□□□□□ -0.08
LINC00339-213ENST00000642137 FAM196BA6NMK8 535 aa14.55□□□□□ -0.08
LINC00339-213ENST00000642137 B4E1Z4 1266 aa14.55□□□□□ -0.08
LINC00339-213ENST00000642137 RANBP6O60518 1105 aaKnown RBP14.55□□□□□ -0.08
LINC00339-213ENST00000642137 CTNND1O60716 968 aaKnown RBP14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms