RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 JAKMIP3Q5VZ66 844 aa5.68□□□□□ -1.5
SCN1A-218ENST00000640036 KRT79Q5XKE5 535 aa5.68□□□□□ -1.5
SCN1A-218ENST00000640036 CACNA2D4Q7Z3S7 1137 aa5.68□□□□□ -1.5
SCN1A-218ENST00000640036 METTL23Q86XA0 190 aa5.68□□□□□ -1.5
SCN1A-218ENST00000640036 MYO10Q9HD67 2058 aa5.68□□□□□ -1.5
SCN1A-218ENST00000640036 GAS8O95995 478 aa5.67□□□□□ -1.5
SCN1A-218ENST00000640036 P4HA1P13674 534 aa5.67□□□□□ -1.5
SCN1A-218ENST00000640036 HOOK3Q86VS8 718 aa5.67□□□□□ -1.5
SCN1A-218ENST00000640036 CCDC144CPQ8IYA2 1237 aa5.67□□□□□ -1.5
SCN1A-218ENST00000640036 PIGBQ92521 554 aa5.67□□□□□ -1.5
SCN1A-218ENST00000640036 GTPBP4Q9BZE4 634 aaKnown RBP5.67□□□□□ -1.5
SCN1A-218ENST00000640036 CLIP2Q9UDT6 1046 aa5.67□□□□□ -1.5
SCN1A-218ENST00000640036 MAP3K1Q13233 1512 aa5.67□□□□□ -1.5
SCN1A-218ENST00000640036 TMEM88BA6NKF7 163 aa5.67□□□□□ -1.5
SCN1A-218ENST00000640036 GIGYF2Q6Y7W6 1299 aaKnown RBP5.67□□□□□ -1.5
SCN1A-218ENST00000640036 MIGA2Q7L4E1 593 aa5.67□□□□□ -1.5
SCN1A-218ENST00000640036 LZTS2Q9BRK4 669 aa5.67□□□□□ -1.5
SCN1A-218ENST00000640036 SLC26A6Q9BXS9 759 aa5.67□□□□□ -1.5
SCN1A-218ENST00000640036 EIF3JO75822 258 aaKnown RBP5.67□□□□□ -1.5
SCN1A-218ENST00000640036 STYK1Q6J9G0 422 aa5.67□□□□□ -1.5
SCN1A-218ENST00000640036 LDHDQ86WU2 507 aa5.67□□□□□ -1.5
SCN1A-218ENST00000640036 CCDC83Q8IWF9 413 aa5.67□□□□□ -1.5
SCN1A-218ENST00000640036 AKT3Q9Y243 479 aa5.67□□□□□ -1.5
SCN1A-218ENST00000640036 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP5.67□□□□□ -1.5
SCN1A-218ENST00000640036 ERBB3P21860 1342 aa5.67□□□□□ -1.5
SCN1A-218ENST00000640036 ARHGEF35A5YM69 484 aa5.67□□□□□ -1.5
SCN1A-218ENST00000640036 SEC24BO95487 1268 aa5.67□□□□□ -1.5
SCN1A-218ENST00000640036 VIMP08670 466 aaKnown RBP5.67□□□□□ -1.5
SCN1A-218ENST00000640036 ATF7P17544 494 aaPredicted RBP5.67□□□□□ -1.5
SCN1A-218ENST00000640036 C7orf31Q8N865 590 aa5.67□□□□□ -1.5
SCN1A-218ENST00000640036 PCDHA1Q9Y5I3 950 aa5.67□□□□□ -1.5
SCN1A-218ENST00000640036 USP16Q9Y5T5 823 aa5.67□□□□□ -1.5
SCN1A-218ENST00000640036 SPATA31A5Q5VU36 1347 aa5.67□□□□□ -1.5
SCN1A-218ENST00000640036 SPATA31A7Q8IWB4 1347 aa5.67□□□□□ -1.5
SCN1A-218ENST00000640036 IGBP1P78318 339 aa5.67□□□□□ -1.5
SCN1A-218ENST00000640036 NFX1Q12986 1120 aaKnown RBP5.67□□□□□ -1.5
SCN1A-218ENST00000640036 HAUS7Q99871 368 aa5.67□□□□□ -1.5
SCN1A-218ENST00000640036 GOLGA6L10A0A0M3HER8 536 aa5.67□□□□□ -1.5
SCN1A-218ENST00000640036 A0A1B0GUL7 405 aa5.67□□□□□ -1.5
SCN1A-218ENST00000640036 USP17L5A8MUK1 530 aa5.67□□□□□ -1.5
SCN1A-218ENST00000640036 MAP3K7O43318 606 aa5.67□□□□□ -1.5
SCN1A-218ENST00000640036 CWF19L2Q2TBE0 894 aaKnown RBP5.67□□□□□ -1.5
SCN1A-218ENST00000640036 PPFIBP1Q86W92 1011 aa5.67□□□□□ -1.5
SCN1A-218ENST00000640036 RDH13Q8NBN7 331 aa5.67□□□□□ -1.5
SCN1A-218ENST00000640036 EXOC7Q9UPT5 735 aa5.67□□□□□ -1.5
SCN1A-218ENST00000640036 DENND3A2RUS2 1198 aa5.66□□□□□ -1.5
SCN1A-218ENST00000640036 RTL1A6NKG5 1358 aa5.66□□□□□ -1.5
SCN1A-218ENST00000640036 INSRP06213 1382 aa5.66□□□□□ -1.5
SCN1A-218ENST00000640036 ARHGEF12Q9NZN5 1544 aa5.66□□□□□ -1.5
SCN1A-218ENST00000640036 FKTNO75072 461 aa5.66□□□□□ -1.5
SCN1A-218ENST00000640036 MBD4O95243 580 aa5.66□□□□□ -1.5
SCN1A-218ENST00000640036 MMP14P50281 582 aa5.66□□□□□ -1.5
SCN1A-218ENST00000640036 FOXP4Q8IVH2 680 aaPredicted RBP5.66□□□□□ -1.5
SCN1A-218ENST00000640036 TBC1D5Q92609 795 aa5.66□□□□□ -1.5
SCN1A-218ENST00000640036 RNF208Q9H0X6 261 aa5.66□□□□□ -1.5
SCN1A-218ENST00000640036 LGR6Q9HBX8 967 aa5.66□□□□□ -1.5
SCN1A-218ENST00000640036 GGA3Q9NZ52 723 aa5.66□□□□□ -1.5
SCN1A-218ENST00000640036 DDX49Q9Y6V7 483 aaKnown RBP5.66□□□□□ -1.5
SCN1A-218ENST00000640036 RNF17Q9BXT8 1623 aaKnown RBP5.66□□□□□ -1.5
SCN1A-218ENST00000640036 PRAMEF22A3QJZ6 481 aa5.66□□□□□ -1.5
SCN1A-218ENST00000640036 ATXN3P54252 364 aaPredicted RBP5.66□□□□□ -1.5
SCN1A-218ENST00000640036 MCMDC2Q4G0Z9 681 aa5.66□□□□□ -1.5
SCN1A-218ENST00000640036 RNF123Q5XPI4 1314 aa5.66□□□□□ -1.5
SCN1A-218ENST00000640036 TCOF1Q13428 1488 aaKnown RBP5.66□□□□□ -1.5
SCN1A-218ENST00000640036 TOMM70O94826 608 aa5.66□□□□□ -1.5
SCN1A-218ENST00000640036 CASTP20810 708 aaKnown RBP5.66□□□□□ -1.5
SCN1A-218ENST00000640036 CCDC40Q4G0X9 1142 aa5.66□□□□□ -1.5
SCN1A-218ENST00000640036 ZNF449Q6P9G9 518 aa5.66□□□□□ -1.5
SCN1A-218ENST00000640036 IL16Q14005 1332 aa5.66□□□□□ -1.5
SCN1A-218ENST00000640036 XRCC6P12956 609 aaKnown RBP eCLIP5.66□□□□□ -1.5
SCN1A-218ENST00000640036 BTDP43251 543 aa5.66□□□□□ -1.5
SCN1A-218ENST00000640036 KRT85P78386 507 aa5.66□□□□□ -1.5
SCN1A-218ENST00000640036 OTUD6BQ8N6M0 293 aa5.66□□□□□ -1.5
SCN1A-218ENST00000640036 ELP3Q9H9T3 547 aa5.66□□□□□ -1.5
SCN1A-218ENST00000640036 HMG20BQ9P0W2 317 aa5.66□□□□□ -1.5
SCN1A-218ENST00000640036 A0A1W2PP64 1363 aa5.66□□□□□ -1.5
SCN1A-218ENST00000640036 GCOM1H8Y6P7 765 aaPredicted RBP5.66□□□□□ -1.5
SCN1A-218ENST00000640036 PCCAP05165 728 aaPredicted RBP5.66□□□□□ -1.5
SCN1A-218ENST00000640036 POLR2MP0CAP2 368 aa5.66□□□□□ -1.5
SCN1A-218ENST00000640036 TFDP1Q14186 410 aa5.66□□□□□ -1.5
SCN1A-218ENST00000640036 NFKBIBQ15653 356 aa5.66□□□□□ -1.5
SCN1A-218ENST00000640036 USP17L2Q6R6M4 530 aa5.66□□□□□ -1.5
SCN1A-218ENST00000640036 PGBD3Q8N328 593 aa5.66□□□□□ -1.5
SCN1A-218ENST00000640036 NOX5Q96PH1 765 aa5.66□□□□□ -1.5
SCN1A-218ENST00000640036 INO80BQ9C086 356 aaPredicted RBP5.66□□□□□ -1.5
SCN1A-218ENST00000640036 FBXL21Q9UKT6 434 aa5.66□□□□□ -1.5
SCN1A-218ENST00000640036 NFKBIAP25963 317 aa5.66□□□□□ -1.5
SCN1A-218ENST00000640036 HAUS3Q68CZ6 603 aa5.66□□□□□ -1.5
SCN1A-218ENST00000640036 SEPT14Q6ZU15 432 aa5.66□□□□□ -1.5
SCN1A-218ENST00000640036 SUGCTQ9HAC7 445 aa5.66□□□□□ -1.5
SCN1A-218ENST00000640036 ARPP21Q9UBL0 812 aaPredicted RBP5.66□□□□□ -1.5
SCN1A-218ENST00000640036 IBTKQ9P2D0 1353 aaPredicted RBP5.65□□□□□ -1.5
SCN1A-218ENST00000640036 PTCH1Q13635 1447 aa5.65□□□□□ -1.5
SCN1A-218ENST00000640036 MACROD2A1Z1Q3 448 aa5.65□□□□□ -1.5
SCN1A-218ENST00000640036 SP8Q8IXZ3 490 aa5.65□□□□□ -1.5
SCN1A-218ENST00000640036 PROCA1Q8NCQ7 364 aaPredicted RBP5.65□□□□□ -1.5
SCN1A-218ENST00000640036 DEPTORQ8TB45 409 aa5.65□□□□□ -1.5
SCN1A-218ENST00000640036 LEO1Q8WVC0 666 aaPredicted RBP5.65□□□□□ -1.5
SCN1A-218ENST00000640036 MMP19Q99542 508 aa5.65□□□□□ -1.5
SCN1A-218ENST00000640036 STX10O60499 249 aa5.65□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms