RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 CD2APQ9Y5K6 639 aa19.79■□□□□ 0.76
CLN3-252ENST00000636907 FOCADQ5VW36 1801 aa19.79■□□□□ 0.76
CLN3-252ENST00000636907 PTPDC1A2A3K4 754 aa19.78■□□□□ 0.76
CLN3-252ENST00000636907 PDE4BQ07343 736 aa19.78■□□□□ 0.76
CLN3-252ENST00000636907 WTAPQ15007 396 aa19.78■□□□□ 0.76
CLN3-252ENST00000636907 LARGE2Q8N3Y3 721 aa19.78■□□□□ 0.76
CLN3-252ENST00000636907 CHMP4CQ96CF2 233 aa19.78■□□□□ 0.76
CLN3-252ENST00000636907 DYNLL2Q96FJ2 89 aa19.78■□□□□ 0.76
CLN3-252ENST00000636907 ERICH2A1L162 156 aa19.78■□□□□ 0.76
CLN3-252ENST00000636907 POLR3DP05423 398 aaPredicted RBP19.78■□□□□ 0.76
CLN3-252ENST00000636907 PDCP20941 246 aa19.78■□□□□ 0.76
CLN3-252ENST00000636907 PLCD1P51178 756 aa19.78■□□□□ 0.76
CLN3-252ENST00000636907 APOBEC3HQ6NTF7 200 aaKnown RBP19.78■□□□□ 0.76
CLN3-252ENST00000636907 CHAMP1Q96JM3 812 aa19.78■□□□□ 0.76
CLN3-252ENST00000636907 UBAC1Q9BSL1 405 aa19.78■□□□□ 0.76
CLN3-252ENST00000636907 PSME4Q14997 1843 aa19.77■□□□□ 0.76
CLN3-252ENST00000636907 TNKSO95271 1327 aa19.77■□□□□ 0.76
CLN3-252ENST00000636907 VPS37CA5D8V6 355 aaPredicted RBP19.77■□□□□ 0.76
CLN3-252ENST00000636907 CCDC69A6NI79 296 aa19.77■□□□□ 0.76
CLN3-252ENST00000636907 RXRAP19793 462 aa19.77■□□□□ 0.76
CLN3-252ENST00000636907 HMGN5P82970 282 aaKnown RBP19.77■□□□□ 0.76
CLN3-252ENST00000636907 SEC23AQ15436 765 aa19.77■□□□□ 0.76
CLN3-252ENST00000636907 ZSCAN10Q96SZ4 725 aaPredicted RBP19.77■□□□□ 0.76
CLN3-252ENST00000636907 MRIQ9BWK5 157 aa19.77■□□□□ 0.76
CLN3-252ENST00000636907 VPS33BQ9H267 617 aa19.77■□□□□ 0.76
CLN3-252ENST00000636907 USP40Q9NVE5 1235 aa19.77■□□□□ 0.76
CLN3-252ENST00000636907 ZBTB43O43298 467 aa19.76■□□□□ 0.75
CLN3-252ENST00000636907 DHX16O60231 1041 aaKnown RBP19.76■□□□□ 0.75
CLN3-252ENST00000636907 F13A1P00488 732 aa19.76■□□□□ 0.75
CLN3-252ENST00000636907 METAP2P50579 478 aaKnown RBP eCLIP19.76■□□□□ 0.75
CLN3-252ENST00000636907 HDLBPQ00341 1268 aaKnown RBP19.76■□□□□ 0.75
CLN3-252ENST00000636907 MICU3Q86XE3 530 aa19.76■□□□□ 0.75
CLN3-252ENST00000636907 MYL10Q9BUA6 226 aa19.76■□□□□ 0.75
CLN3-252ENST00000636907 SLC12A7Q9Y666 1083 aa19.76■□□□□ 0.75
CLN3-252ENST00000636907 MYH1P12882 1939 aa19.75■□□□□ 0.75
CLN3-252ENST00000636907 WDHD1O75717 1129 aaPredicted RBP19.75■□□□□ 0.75
CLN3-252ENST00000636907 PDIA4P13667 645 aaKnown RBP19.75■□□□□ 0.75
CLN3-252ENST00000636907 MCTP1Q6DN14 999 aa19.75■□□□□ 0.75
CLN3-252ENST00000636907 CDC42EP5Q6NZY7 148 aa19.75■□□□□ 0.75
CLN3-252ENST00000636907 TMTC2Q8N394 836 aa19.75■□□□□ 0.75
CLN3-252ENST00000636907 FAM184AQ8NB25 1140 aa19.75■□□□□ 0.75
CLN3-252ENST00000636907 ZDHHC15Q96MV8 337 aa19.75■□□□□ 0.75
CLN3-252ENST00000636907 PCDHAC2Q9Y5I4 1007 aa19.75■□□□□ 0.75
CLN3-252ENST00000636907 PPFIA3O75145 1194 aa19.75■□□□□ 0.75
CLN3-252ENST00000636907 IARSP41252 1262 aaKnown RBP19.75■□□□□ 0.75
CLN3-252ENST00000636907 PICALMQ13492 652 aa19.75■□□□□ 0.75
CLN3-252ENST00000636907 FAM47AQ5JRC9 791 aa19.75■□□□□ 0.75
CLN3-252ENST00000636907 IQCA1Q86XH1 822 aa19.75■□□□□ 0.75
CLN3-252ENST00000636907 ENAHQ8N8S7 591 aaPredicted RBP19.75■□□□□ 0.75
CLN3-252ENST00000636907 DDX4Q9NQI0 724 aaKnown RBP19.75■□□□□ 0.75
CLN3-252ENST00000636907 FER1L6Q2WGJ9 1857 aa19.74■□□□□ 0.75
CLN3-252ENST00000636907 GOLGA8AA7E2F4 631 aa19.74■□□□□ 0.75
CLN3-252ENST00000636907 CPLX1O14810 134 aa19.74■□□□□ 0.75
CLN3-252ENST00000636907 CDC27P30260 824 aa19.74■□□□□ 0.75
CLN3-252ENST00000636907 CDC37L1Q7L3B6 337 aa19.74■□□□□ 0.75
CLN3-252ENST00000636907 CCDC144CPQ8IYA2 1237 aa19.74■□□□□ 0.75
CLN3-252ENST00000636907 SERPINA10Q9UK55 444 aa19.74■□□□□ 0.75
CLN3-252ENST00000636907 NID2Q14112 1375 aa19.74■□□□□ 0.75
CLN3-252ENST00000636907 GOLGA6L22H0YM25 854 aa19.73■□□□□ 0.75
CLN3-252ENST00000636907 RAD17O75943 681 aa19.73■□□□□ 0.75
CLN3-252ENST00000636907 FDPSP14324 419 aaKnown RBP19.73■□□□□ 0.75
CLN3-252ENST00000636907 ADD1P35611 737 aaKnown RBP19.73■□□□□ 0.75
CLN3-252ENST00000636907 FOXD4L6Q3SYB3 417 aaPredicted RBP19.73■□□□□ 0.75
CLN3-252ENST00000636907 FOXD4L3Q6VB84 417 aaPredicted RBP19.73■□□□□ 0.75
CLN3-252ENST00000636907 SYNE3Q6ZMZ3 975 aa19.73■□□□□ 0.75
CLN3-252ENST00000636907 SLC44A5Q8NCS7 719 aa19.73■□□□□ 0.75
CLN3-252ENST00000636907 TAOK3Q9H2K8 898 aa19.73■□□□□ 0.75
CLN3-252ENST00000636907 FAM217BQ9NTX9 383 aaPredicted RBP19.73■□□□□ 0.75
CLN3-252ENST00000636907 ECM29Q5VYK3 1845 aa19.73■□□□□ 0.75
CLN3-252ENST00000636907 TSPY2A6NKD2 308 aa19.72■□□□□ 0.75
CLN3-252ENST00000636907 PSMD14O00487 310 aa19.72■□□□□ 0.75
CLN3-252ENST00000636907 RBM5P52756 815 aaKnown RBP eCLIP19.72■□□□□ 0.75
CLN3-252ENST00000636907 RSBN1LQ6PCB5 846 aaPredicted RBP19.72■□□□□ 0.75
CLN3-252ENST00000636907 NIM1KQ8IY84 436 aa19.72■□□□□ 0.75
CLN3-252ENST00000636907 ZNF654Q8IZM8 581 aa19.72■□□□□ 0.75
CLN3-252ENST00000636907 MKNK2Q9HBH9 465 aa19.72■□□□□ 0.75
CLN3-252ENST00000636907 BCS1LQ9Y276 419 aa19.72■□□□□ 0.75
CLN3-252ENST00000636907 KIF3AQ9Y496 699 aa19.72■□□□□ 0.75
CLN3-252ENST00000636907 GOLGB1Q14789 3259 aaKnown RBP19.72■□□□□ 0.75
CLN3-252ENST00000636907 NFKBIEO00221 500 aa19.71■□□□□ 0.75
CLN3-252ENST00000636907 NMT2O60551 498 aa19.71■□□□□ 0.75
CLN3-252ENST00000636907 NT5C2P49902 561 aa19.71■□□□□ 0.75
CLN3-252ENST00000636907 IFIT1BQ5T764 474 aaKnown RBP19.71■□□□□ 0.75
CLN3-252ENST00000636907 C16orf86Q6ZW13 317 aa19.71■□□□□ 0.75
CLN3-252ENST00000636907 ZNRF3Q9ULT6 936 aa19.71■□□□□ 0.75
CLN3-252ENST00000636907 MYO3BQ8WXR4 1341 aa19.71■□□□□ 0.75
CLN3-252ENST00000636907 VIL1P09327 827 aaKnown RBP19.71■□□□□ 0.75
CLN3-252ENST00000636907 PTMSP20962 102 aa19.71■□□□□ 0.75
CLN3-252ENST00000636907 CDK8P49336 464 aa19.71■□□□□ 0.75
CLN3-252ENST00000636907 RCAN1P53805 252 aa19.71■□□□□ 0.75
CLN3-252ENST00000636907 TFAP4Q01664 338 aa19.71■□□□□ 0.75
CLN3-252ENST00000636907 NFIAQ12857 509 aa19.71■□□□□ 0.75
CLN3-252ENST00000636907 NTRK3Q16288 839 aa19.71■□□□□ 0.75
CLN3-252ENST00000636907 NLGN2Q8NFZ4 835 aa19.71■□□□□ 0.75
CLN3-252ENST00000636907 RASA1P20936 1047 aa19.7■□□□□ 0.74
CLN3-252ENST00000636907 FOSBP53539 338 aa19.7■□□□□ 0.74
CLN3-252ENST00000636907 OSBPL5Q9H0X9 879 aaPredicted RBP19.7■□□□□ 0.74
CLN3-252ENST00000636907 ORC3Q9UBD5 711 aaPredicted RBP19.7■□□□□ 0.74
CLN3-252ENST00000636907 H3BQV1 296 aa19.69■□□□□ 0.74
CLN3-252ENST00000636907 TRAK2O60296 914 aa19.69■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms