RNA–Protein interactions for RNA: ENST00000636238.1

CIITA-214, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-214ENST00000636238 SOCS4Q8WXH5 440 aa9.14□□□□□ -0.95
CIITA-214ENST00000636238 USP40Q9NVE5 1235 aa9.14□□□□□ -0.95
CIITA-214ENST00000636238 MORF4L1Q9UBU8 362 aa9.14□□□□□ -0.95
CIITA-214ENST00000636238 DENND2AQ9ULE3 1009 aa9.14□□□□□ -0.95
CIITA-214ENST00000636238 IQSEC3Q9UPP2 1182 aaPredicted RBP9.14□□□□□ -0.95
CIITA-214ENST00000636238 EYA2O00167 538 aa9.13□□□□□ -0.95
CIITA-214ENST00000636238 NBPF7P0C2Y1 421 aaPredicted RBP9.13□□□□□ -0.95
CIITA-214ENST00000636238 COL6A1P12109 1028 aa9.13□□□□□ -0.95
CIITA-214ENST00000636238 MAGEA10P43363 369 aaPredicted RBP9.13□□□□□ -0.95
CIITA-214ENST00000636238 TCP10Q12799 353 aa9.13□□□□□ -0.95
CIITA-214ENST00000636238 MVPQ14764 893 aaKnown RBP9.13□□□□□ -0.95
CIITA-214ENST00000636238 LRRC24Q50LG9 513 aa9.13□□□□□ -0.95
CIITA-214ENST00000636238 ITPRIPQ8IWB1 547 aa9.13□□□□□ -0.95
CIITA-214ENST00000636238 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.13□□□□□ -0.95
CIITA-214ENST00000636238 ANKRD44Q8N8A2 993 aa9.13□□□□□ -0.95
CIITA-214ENST00000636238 GTF3C2Q8WUA4 911 aaPredicted RBP9.13□□□□□ -0.95
CIITA-214ENST00000636238 UBE2OQ9C0C9 1292 aaKnown RBP9.13□□□□□ -0.95
CIITA-214ENST00000636238 OSBPL5Q9H0X9 879 aaPredicted RBP9.13□□□□□ -0.95
CIITA-214ENST00000636238 BICC1Q9H694 974 aaKnown RBP9.13□□□□□ -0.95
CIITA-214ENST00000636238 GINM1Q9NU53 330 aa9.13□□□□□ -0.95
CIITA-214ENST00000636238 GJD2Q9UKL4 321 aa9.13□□□□□ -0.95
CIITA-214ENST00000636238 COL2A1P02458 1487 aaPredicted RBP9.13□□□□□ -0.95
CIITA-214ENST00000636238 PTPRCP08575 1304 aa9.12□□□□□ -0.95
CIITA-214ENST00000636238 POTEB2H3BUK9 544 aa9.12□□□□□ -0.95
CIITA-214ENST00000636238 IGSF3O75054 1194 aa9.12□□□□□ -0.95
CIITA-214ENST00000636238 CIAO1O76071 339 aa9.12□□□□□ -0.95
CIITA-214ENST00000636238 RGS3P49796 1198 aa9.12□□□□□ -0.95
CIITA-214ENST00000636238 SH3D19Q5HYK7 790 aa9.12□□□□□ -0.95
CIITA-214ENST00000636238 SPTY2D1Q68D10 685 aaPredicted RBP9.12□□□□□ -0.95
CIITA-214ENST00000636238 ARHGAP45Q92619 1136 aa9.12□□□□□ -0.95
CIITA-214ENST00000636238 COL25A1Q9BXS0 654 aaPredicted RBP9.12□□□□□ -0.95
CIITA-214ENST00000636238 API5Q9BZZ5 524 aaKnown RBP9.12□□□□□ -0.95
CIITA-214ENST00000636238 HDAC5Q9UQL6 1122 aa9.12□□□□□ -0.95
CIITA-214ENST00000636238 PRDX5P30044 214 aa9.11□□□□□ -0.95
CIITA-214ENST00000636238 DIXDC1Q155Q3 683 aa9.11□□□□□ -0.95
CIITA-214ENST00000636238 SLC4A10Q6U841 1118 aa9.11□□□□□ -0.95
CIITA-214ENST00000636238 ANKRD13CQ8N6S4 541 aa9.11□□□□□ -0.95
CIITA-214ENST00000636238 ZNF280CQ8ND82 737 aa9.11□□□□□ -0.95
CIITA-214ENST00000636238 DIS3LQ8TF46 1054 aaKnown RBP9.11□□□□□ -0.95
CIITA-214ENST00000636238 AS3MTQ9HBK9 375 aa9.11□□□□□ -0.95
CIITA-214ENST00000636238 ZMYND8Q9ULU4 1186 aaPredicted RBP9.11□□□□□ -0.95
CIITA-214ENST00000636238 TRIM75PA6NK02 468 aa9.1□□□□□ -0.95
CIITA-214ENST00000636238 MSCO60682 206 aa9.1□□□□□ -0.95
CIITA-214ENST00000636238 ECM2O94769 699 aaPredicted RBP9.1□□□□□ -0.95
CIITA-214ENST00000636238 MAPK4P31152 587 aa9.1□□□□□ -0.95
CIITA-214ENST00000636238 HOXA7P31268 230 aaPredicted RBP9.1□□□□□ -0.95
CIITA-214ENST00000636238 ZSCAN29Q8IWY8 852 aaPredicted RBP9.1□□□□□ -0.95
CIITA-214ENST00000636238 NUDT12Q9BQG2 462 aa9.1□□□□□ -0.95
CIITA-214ENST00000636238 WDR18Q9BV38 432 aa9.1□□□□□ -0.95
CIITA-214ENST00000636238 CEP126Q9P2H0 1117 aa9.1□□□□□ -0.95
CIITA-214ENST00000636238 HERC5Q9UII4 1024 aaKnown RBP9.1□□□□□ -0.95
CIITA-214ENST00000636238 TAOK2Q9UL54 1235 aa9.1□□□□□ -0.95
CIITA-214ENST00000636238 TTC28Q96AY4 2481 aa9.1□□□□□ -0.95
CIITA-214ENST00000636238 ZSWIM8A7E2V4 1837 aa9.1□□□□□ -0.95
CIITA-214ENST00000636238 TMEM265A0A087WTH1 108 aa9.09□□□□□ -0.95
CIITA-214ENST00000636238 USP17L5A8MUK1 530 aa9.09□□□□□ -0.95
CIITA-214ENST00000636238 PRKAR2AP13861 404 aaKnown RBP9.09□□□□□ -0.95
CIITA-214ENST00000636238 IL15P40933 162 aaPredicted RBP9.09□□□□□ -0.95
CIITA-214ENST00000636238 RFX5P48382 616 aaPredicted RBP9.09□□□□□ -0.95
CIITA-214ENST00000636238 GSTO1P78417 241 aa9.09□□□□□ -0.95
CIITA-214ENST00000636238 ATP2B3Q16720 1220 aa9.09□□□□□ -0.95
CIITA-214ENST00000636238 Q7L0L9 218 aa9.09□□□□□ -0.95
CIITA-214ENST00000636238 SH3BP5LQ7L8J4 393 aa9.09□□□□□ -0.95
CIITA-214ENST00000636238 DZIP1Q86YF9 867 aaKnown RBP9.09□□□□□ -0.95
CIITA-214ENST00000636238 ZFPM1Q8IX07 1006 aa9.09□□□□□ -0.95
CIITA-214ENST00000636238 SYMPKQ92797 1274 aaKnown RBP9.09□□□□□ -0.95
CIITA-214ENST00000636238 LBHD1Q9BQE6 289 aaPredicted RBP9.09□□□□□ -0.95
CIITA-214ENST00000636238 ASCC2Q9H1I8 757 aaPredicted RBP9.09□□□□□ -0.95
CIITA-214ENST00000636238 DDX19BQ9UMR2 479 aa9.09□□□□□ -0.95
CIITA-214ENST00000636238 PCDHB15Q9Y5E8 787 aa9.09□□□□□ -0.95
CIITA-214ENST00000636238 PFASO15067 1338 aa9.08□□□□□ -0.96
CIITA-214ENST00000636238 GPR75-ASB3A0A0A6YYF3 556 aa9.08□□□□□ -0.96
CIITA-214ENST00000636238 DDTLA6NHG4 134 aaPredicted RBP9.08□□□□□ -0.96
CIITA-214ENST00000636238 C19orf81C9J6K1 198 aa9.08□□□□□ -0.96
CIITA-214ENST00000636238 GLRX3O76003 335 aaKnown RBP9.08□□□□□ -0.96
CIITA-214ENST00000636238 IGHDP01880 384 aa9.08□□□□□ -0.96
CIITA-214ENST00000636238 LDHCP07864 332 aa9.08□□□□□ -0.96
CIITA-214ENST00000636238 ZKSCAN1P17029 563 aaPredicted RBP9.08□□□□□ -0.96
CIITA-214ENST00000636238 CAP2P40123 477 aa9.08□□□□□ -0.96
CIITA-214ENST00000636238 RGS2P41220 211 aa9.08□□□□□ -0.96
CIITA-214ENST00000636238 IRX3P78415 501 aaPredicted RBP9.08□□□□□ -0.96
CIITA-214ENST00000636238 TREML2Q5T2D2 321 aa9.08□□□□□ -0.96
CIITA-214ENST00000636238 ZNF697Q5TEC3 545 aa9.08□□□□□ -0.96
CIITA-214ENST00000636238 ATG9AQ7Z3C6 839 aa9.08□□□□□ -0.96
CIITA-214ENST00000636238 GPRC5AQ8NFJ5 357 aa9.08□□□□□ -0.96
CIITA-214ENST00000636238 TRIB2Q92519 343 aa9.08□□□□□ -0.96
CIITA-214ENST00000636238 USP6NLQ92738 828 aa9.08□□□□□ -0.96
CIITA-214ENST00000636238 USP44Q9H0E7 712 aa9.08□□□□□ -0.96
CIITA-214ENST00000636238 DHX36Q9H2U1 1008 aaKnown RBP9.08□□□□□ -0.96
CIITA-214ENST00000636238 C1orf115Q9H7X2 142 aa9.08□□□□□ -0.96
CIITA-214ENST00000636238 MROH7-TTC4A0A0A0MT08 1334 aa9.07□□□□□ -0.96
CIITA-214ENST00000636238 ASNSP08243 561 aa9.07□□□□□ -0.96
CIITA-214ENST00000636238 SYN1P17600 705 aa9.07□□□□□ -0.96
CIITA-214ENST00000636238 BACE1P56817 501 aa9.07□□□□□ -0.96
CIITA-214ENST00000636238 SPP2Q13103 211 aa9.07□□□□□ -0.96
CIITA-214ENST00000636238 GUCD1Q96NT3 240 aa9.07□□□□□ -0.96
CIITA-214ENST00000636238 APBA2Q99767 749 aa9.07□□□□□ -0.96
CIITA-214ENST00000636238 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.07□□□□□ -0.96
CIITA-214ENST00000636238 PRDM6Q9NQX0 595 aa9.07□□□□□ -0.96
CIITA-214ENST00000636238 ZBTB40Q9NUA8 1239 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms