RNA–Protein interactions for RNA: ENST00000636172.1

CLN3-245, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,536 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-245ENST00000636172 FGRP09769 529 aa24.39■■□□□ 1.49
CLN3-245ENST00000636172 MFSD6Q6ZSS7 791 aa24.39■■□□□ 1.49
CLN3-245ENST00000636172 TM6SF1Q9BZW5 370 aa24.39■■□□□ 1.49
CLN3-245ENST00000636172 RNF41Q9H4P4 317 aaPredicted RBP24.39■■□□□ 1.49
CLN3-245ENST00000636172 PGAP2Q9UHJ9 254 aa24.39■■□□□ 1.49
CLN3-245ENST00000636172 DDX52Q9Y2R4 599 aaKnown RBP eCLIP24.39■■□□□ 1.49
CLN3-245ENST00000636172 PITPNM2Q9BZ72 1349 aa24.38■■□□□ 1.49
CLN3-245ENST00000636172 CASTP20810 708 aaKnown RBP24.38■■□□□ 1.49
CLN3-245ENST00000636172 PSMA5P28066 241 aa24.38■■□□□ 1.49
CLN3-245ENST00000636172 GABPAQ06546 454 aa24.38■■□□□ 1.49
CLN3-245ENST00000636172 CDAN1Q8IWY9 1227 aa24.38■■□□□ 1.49
CLN3-245ENST00000636172 NKX2-3Q8TAU0 364 aa24.38■■□□□ 1.49
CLN3-245ENST00000636172 NEK1Q96PY6 1258 aa24.38■■□□□ 1.49
CLN3-245ENST00000636172 UPF3BQ9BZI7 483 aaKnown RBP24.38■■□□□ 1.49
CLN3-245ENST00000636172 EHD4Q9H223 541 aa24.38■■□□□ 1.49
CLN3-245ENST00000636172 PI4KBQ9UBF8 816 aa24.38■■□□□ 1.49
CLN3-245ENST00000636172 RABEP1Q15276 862 aa24.37■■□□□ 1.49
CLN3-245ENST00000636172 C16orf86Q6ZW13 317 aa24.37■■□□□ 1.49
CLN3-245ENST00000636172 SLC44A5Q8NCS7 719 aa24.37■■□□□ 1.49
CLN3-245ENST00000636172 CSRNP1Q96S65 589 aa24.37■■□□□ 1.49
CLN3-245ENST00000636172 DEFB129Q9H1M3 183 aa24.37■■□□□ 1.49
CLN3-245ENST00000636172 RRAGCQ9HB90 399 aa24.37■■□□□ 1.49
CLN3-245ENST00000636172 ZSWIM6Q9HCJ5 1215 aa24.37■■□□□ 1.49
CLN3-245ENST00000636172 PCP11498 1178 aaKnown RBP24.36■■□□□ 1.49
CLN3-245ENST00000636172 CPA1P15085 419 aa24.36■■□□□ 1.49
CLN3-245ENST00000636172 PNMA8AQ86V59 439 aaPredicted RBP24.36■■□□□ 1.49
CLN3-245ENST00000636172 NCOA7Q8NI08 942 aa24.36■■□□□ 1.49
CLN3-245ENST00000636172 TEPSINQ96N21 525 aa24.36■■□□□ 1.49
CLN3-245ENST00000636172 CNNM2Q9H8M5 875 aa24.36■■□□□ 1.49
CLN3-245ENST00000636172 SERPINB13Q9UIV8 391 aa24.36■■□□□ 1.49
CLN3-245ENST00000636172 RBM19Q9Y4C8 960 aaKnown RBP24.36■■□□□ 1.49
CLN3-245ENST00000636172 ORC4O43929 436 aa24.35■■□□□ 1.49
CLN3-245ENST00000636172 PRDM1O75626 825 aa24.35■■□□□ 1.49
CLN3-245ENST00000636172 SLURP2P0DP57 97 aa24.35■■□□□ 1.49
CLN3-245ENST00000636172 VEGFAP15692 232 aaPredicted RBP24.35■■□□□ 1.49
CLN3-245ENST00000636172 PDE4BQ07343 736 aa24.35■■□□□ 1.49
CLN3-245ENST00000636172 TRDNQ13061 729 aa24.35■■□□□ 1.49
CLN3-245ENST00000636172 EAPPQ56P03 285 aaPredicted RBP24.35■■□□□ 1.49
CLN3-245ENST00000636172 MB21D2Q8IYB1 491 aaPredicted RBP24.35■■□□□ 1.49
CLN3-245ENST00000636172 ZC3H15Q8WU90 426 aaKnown RBP24.35■■□□□ 1.49
CLN3-245ENST00000636172 MYH8P13535 1937 aa24.35■■□□□ 1.49
CLN3-245ENST00000636172 B4E1Z4 1266 aa24.35■■□□□ 1.49
CLN3-245ENST00000636172 CDK8P49336 464 aa24.35■■□□□ 1.49
CLN3-245ENST00000636172 RRP12Q5JTH9 1297 aaKnown RBP24.35■■□□□ 1.49
CLN3-245ENST00000636172 BLOC1S2Q6QNY1 142 aa24.35■■□□□ 1.49
CLN3-245ENST00000636172 RALYLQ86SE5 291 aaKnown RBP24.35■■□□□ 1.49
CLN3-245ENST00000636172 METTL16Q86W50 562 aaKnown RBP24.35■■□□□ 1.49
CLN3-245ENST00000636172 DNAJC18Q9H819 358 aa24.35■■□□□ 1.49
CLN3-245ENST00000636172 TOMM22Q9NS69 142 aa24.35■■□□□ 1.49
CLN3-245ENST00000636172 CYP46A1Q9Y6A2 500 aa24.35■■□□□ 1.49
CLN3-245ENST00000636172 RUFY3Q7L099 469 aa24.34■■□□□ 1.49
CLN3-245ENST00000636172 ZNF526Q8TF50 670 aaPredicted RBP24.34■■□□□ 1.49
CLN3-245ENST00000636172 DCPSQ96C86 337 aaKnown RBP24.34■■□□□ 1.49
CLN3-245ENST00000636172 KRT23Q9C075 422 aa24.34■■□□□ 1.49
CLN3-245ENST00000636172 NMRK2Q9NPI5 230 aa24.34■■□□□ 1.49
CLN3-245ENST00000636172 HMGB1P09429 215 aaKnown RBP24.33■■□□□ 1.49
CLN3-245ENST00000636172 RPS6KB1P23443 525 aa24.33■■□□□ 1.49
CLN3-245ENST00000636172 FOXP4Q8IVH2 680 aaPredicted RBP24.33■■□□□ 1.49
CLN3-245ENST00000636172 SWAP70Q9UH65 585 aa24.33■■□□□ 1.49
CLN3-245ENST00000636172 FAM196BA6NMK8 535 aa24.32■■□□□ 1.48
CLN3-245ENST00000636172 KDM4AO75164 1064 aa24.32■■□□□ 1.48
CLN3-245ENST00000636172 RASA1P20936 1047 aa24.32■■□□□ 1.48
CLN3-245ENST00000636172 SHMT1P34896 483 aa24.32■■□□□ 1.48
CLN3-245ENST00000636172 NEK4P51957 841 aa24.32■■□□□ 1.48
CLN3-245ENST00000636172 CRACR2BQ8N4Y2 399 aaPredicted RBP24.32■■□□□ 1.48
CLN3-245ENST00000636172 MKNK2Q9HBH9 465 aa24.32■■□□□ 1.48
CLN3-245ENST00000636172 ZNF287Q9HBT7 754 aa24.32■■□□□ 1.48
CLN3-245ENST00000636172 PPP2R3BQ9Y5P8 575 aa24.32■■□□□ 1.48
CLN3-245ENST00000636172 POTEIP0CG38 1075 aa24.31■■□□□ 1.48
CLN3-245ENST00000636172 POTEJP0CG39 1038 aa24.31■■□□□ 1.48
CLN3-245ENST00000636172 ANTXR2P58335 489 aa24.31■■□□□ 1.48
CLN3-245ENST00000636172 CYB5R4Q7L1T6 521 aa24.31■■□□□ 1.48
CLN3-245ENST00000636172 DHX32Q7L7V1 743 aaKnown RBP24.31■■□□□ 1.48
CLN3-245ENST00000636172 ESR2Q92731 530 aa24.31■■□□□ 1.48
CLN3-245ENST00000636172 TCEANC2Q96MN5 208 aa24.31■■□□□ 1.48
CLN3-245ENST00000636172 TAOK2Q9UL54 1235 aa24.31■■□□□ 1.48
CLN3-245ENST00000636172 RANBP6O60518 1105 aaKnown RBP24.3■■□□□ 1.48
CLN3-245ENST00000636172 MCM5P33992 734 aa24.3■■□□□ 1.48
CLN3-245ENST00000636172 C1QTNF8P60827 252 aa24.3■■□□□ 1.48
CLN3-245ENST00000636172 EXOSC10Q01780 885 aaKnown RBP24.3■■□□□ 1.48
CLN3-245ENST00000636172 NBPF12Q5TAG4 269 aaPredicted RBP24.3■■□□□ 1.48
CLN3-245ENST00000636172 CHST3Q7LGC8 479 aa24.3■■□□□ 1.48
CLN3-245ENST00000636172 SULF1Q8IWU6 871 aa24.3■■□□□ 1.48
CLN3-245ENST00000636172 TTC14Q96N46 770 aa24.3■■□□□ 1.48
CLN3-245ENST00000636172 ZSWIM5Q9P217 1185 aa24.3■■□□□ 1.48
CLN3-245ENST00000636172 HERC5Q9UII4 1024 aaKnown RBP24.3■■□□□ 1.48
CLN3-245ENST00000636172 ADM5C9JUS6 153 aa24.3■■□□□ 1.48
CLN3-245ENST00000636172 PRAMEF18Q5VWM3 479 aa24.3■■□□□ 1.48
CLN3-245ENST00000636172 KRT26Q7Z3Y9 468 aa24.3■■□□□ 1.48
CLN3-245ENST00000636172 TRIM34Q9BYJ4 488 aa24.3■■□□□ 1.48
CLN3-245ENST00000636172 PRC1O43663 620 aa24.29■■□□□ 1.48
CLN3-245ENST00000636172 FAM47AQ5JRC9 791 aa24.29■■□□□ 1.48
CLN3-245ENST00000636172 PDRG1Q9NUG6 133 aa24.29■■□□□ 1.48
CLN3-245ENST00000636172 WDR19Q8NEZ3 1342 aa24.28■■□□□ 1.48
CLN3-245ENST00000636172 TBC1D12O60347 775 aa24.28■■□□□ 1.48
CLN3-245ENST00000636172 MAP3K10Q02779 954 aa24.28■■□□□ 1.48
CLN3-245ENST00000636172 TATDN1Q6P1N9 297 aa24.28■■□□□ 1.48
CLN3-245ENST00000636172 MIGA2Q7L4E1 593 aa24.28■■□□□ 1.48
CLN3-245ENST00000636172 ZNF444Q8N0Y2 327 aaPredicted RBP24.28■■□□□ 1.48
CLN3-245ENST00000636172 LRRC2Q9BYS8 371 aa24.28■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms