RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 SALL3Q9BXA9 1300 aa21.91■■□□□ 1.1
CLN3-243ENST00000635973 CYP7A1P22680 504 aa21.91■■□□□ 1.1
CLN3-243ENST00000635973 NOL9Q5SY16 702 aaKnown RBP21.91■■□□□ 1.1
CLN3-243ENST00000635973 ZNF384Q8TF68 577 aa21.91■■□□□ 1.1
CLN3-243ENST00000635973 DDX24Q9GZR7 859 aaKnown RBP eCLIP21.91■■□□□ 1.12e-6■■■■■ 40.7
CLN3-243ENST00000635973 MYO5AQ9Y4I1 1855 aaKnown RBP21.91■■□□□ 1.1
CLN3-243ENST00000635973 TLR2O60603 784 aa21.9■■□□□ 1.1
CLN3-243ENST00000635973 BAG3O95817 575 aa21.9■■□□□ 1.1
CLN3-243ENST00000635973 MAP4K4O95819 1239 aaPredicted RBP21.9■■□□□ 1.1
CLN3-243ENST00000635973 PDE1AP54750 535 aa21.9■■□□□ 1.1
CLN3-243ENST00000635973 PI4K2BQ8TCG2 481 aa21.9■■□□□ 1.1
CLN3-243ENST00000635973 GPR75-ASB3A0A0A6YYF3 556 aa21.89■■□□□ 1.09
CLN3-243ENST00000635973 SLC9C2Q5TAH2 1124 aa21.89■■□□□ 1.09
CLN3-243ENST00000635973 AATFQ9NY61 560 aaKnown RBP eCLIP21.89■■□□□ 1.09
CLN3-243ENST00000635973 PDE6AP16499 860 aa21.88■■□□□ 1.09
CLN3-243ENST00000635973 TMED8Q6PL24 325 aaPredicted RBP21.88■■□□□ 1.09
CLN3-243ENST00000635973 CENPQQ7L2Z9 268 aaPredicted RBP21.88■■□□□ 1.09
CLN3-243ENST00000635973 ANKRD23Q86SG2 305 aa21.88■■□□□ 1.09
CLN3-243ENST00000635973 SCYL3Q8IZE3 742 aa21.88■■□□□ 1.09
CLN3-243ENST00000635973 STAP2Q9UGK3 403 aa21.88■■□□□ 1.09
CLN3-243ENST00000635973 KCNH4Q9UQ05 1017 aa21.88■■□□□ 1.09
CLN3-243ENST00000635973 PDHXO00330 501 aa21.87■■□□□ 1.09
CLN3-243ENST00000635973 ZSCAN25Q6NSZ9 544 aa21.87■■□□□ 1.09
CLN3-243ENST00000635973 NBPF11Q86T75 865 aa21.87■■□□□ 1.09
CLN3-243ENST00000635973 ZNF532Q9HCE3 1301 aa21.86■■□□□ 1.09
CLN3-243ENST00000635973 DDTLA6NHG4 134 aaPredicted RBP21.86■■□□□ 1.09
CLN3-243ENST00000635973 CXCL11O14625 94 aa21.86■■□□□ 1.09
CLN3-243ENST00000635973 PLCG2P16885 1265 aa21.86■■□□□ 1.09
CLN3-243ENST00000635973 PRPF38BQ5VTL8 546 aaKnown RBP21.86■■□□□ 1.09
CLN3-243ENST00000635973 ADGRA1Q86SQ6 560 aa21.86■■□□□ 1.09
CLN3-243ENST00000635973 MIGA1Q8NAN2 632 aa21.86■■□□□ 1.09
CLN3-243ENST00000635973 DDX4Q9NQI0 724 aaKnown RBP21.86■■□□□ 1.09
CLN3-243ENST00000635973 ZHX2Q9Y6X8 837 aa21.86■■□□□ 1.09
CLN3-243ENST00000635973 RFX7Q2KHR2 1363 aa21.86■■□□□ 1.09
CLN3-243ENST00000635973 DOCK1Q14185 1865 aa21.86■■□□□ 1.09
CLN3-243ENST00000635973 PHF20L1A8MW92 1017 aa21.85■■□□□ 1.09
CLN3-243ENST00000635973 SLC9C1Q4G0N8 1177 aa21.85■■□□□ 1.09
CLN3-243ENST00000635973 ERICH6BQ5W0A0 696 aa21.85■■□□□ 1.09
CLN3-243ENST00000635973 SH3BP5LQ7L8J4 393 aa21.85■■□□□ 1.09
CLN3-243ENST00000635973 PLEKHM2Q8IWE5 1019 aa21.85■■□□□ 1.09
CLN3-243ENST00000635973 TEX11Q8IYF3 940 aa21.85■■□□□ 1.09
CLN3-243ENST00000635973 KBTBD3Q8NAB2 608 aa21.85■■□□□ 1.09
CLN3-243ENST00000635973 FSD1Q9BTV5 496 aa21.85■■□□□ 1.09
CLN3-243ENST00000635973 CTNND1O60716 968 aaKnown RBP21.84■■□□□ 1.09
CLN3-243ENST00000635973 NPM3O75607 178 aaKnown RBP21.84■■□□□ 1.09
CLN3-243ENST00000635973 GNRH1P01148 92 aa21.84■■□□□ 1.09
CLN3-243ENST00000635973 ADD2P35612 726 aa21.84■■□□□ 1.09
CLN3-243ENST00000635973 RHBDL3P58872 404 aa21.84■■□□□ 1.09
CLN3-243ENST00000635973 LACTBP83111 547 aaPredicted RBP21.84■■□□□ 1.09
CLN3-243ENST00000635973 LRRFIP1Q32MZ4 808 aaKnown RBP21.84■■□□□ 1.09
CLN3-243ENST00000635973 FASTKD5Q7L8L6 764 aaKnown RBP21.84■■□□□ 1.09
CLN3-243ENST00000635973 CERS3Q8IU89 383 aa21.84■■□□□ 1.09
CLN3-243ENST00000635973 SH3RF3Q8TEJ3 882 aaPredicted RBP21.84■■□□□ 1.09
CLN3-243ENST00000635973 PARK7Q99497 189 aaKnown RBP21.84■■□□□ 1.09
CLN3-243ENST00000635973 TMEM106CQ9BVX2 250 aa21.84■■□□□ 1.09
CLN3-243ENST00000635973 XPO5Q9HAV4 1204 aaKnown RBP eCLIP21.84■■□□□ 1.09
CLN3-243ENST00000635973 CPA4Q9UI42 421 aa21.84■■□□□ 1.09
CLN3-243ENST00000635973 ATRNL1Q5VV63 1379 aa21.84■■□□□ 1.09
CLN3-243ENST00000635973 MAGEB6P1A0A0J9YX57 407 aa21.83■■□□□ 1.09
CLN3-243ENST00000635973 TRIM6-TRIM34B2RNG4 842 aa21.83■■□□□ 1.09
CLN3-243ENST00000635973 ECM2O94769 699 aaPredicted RBP21.83■■□□□ 1.09
CLN3-243ENST00000635973 PTPRAP18433 802 aa21.83■■□□□ 1.09
CLN3-243ENST00000635973 ARMC5Q96C12 935 aa21.83■■□□□ 1.09
CLN3-243ENST00000635973 PDE4AP27815 886 aa21.82■■□□□ 1.08
CLN3-243ENST00000635973 PPP4CP60510 307 aa21.82■■□□□ 1.08
CLN3-243ENST00000635973 DYNLL1P63167 89 aaKnown RBP21.82■■□□□ 1.08
CLN3-243ENST00000635973 CAP1Q01518 475 aa21.82■■□□□ 1.08
CLN3-243ENST00000635973 MAP3K10Q02779 954 aa21.82■■□□□ 1.08
CLN3-243ENST00000635973 GADL1Q6ZQY3 521 aa21.82■■□□□ 1.08
CLN3-243ENST00000635973 PTCH2Q9Y6C5 1203 aa21.82■■□□□ 1.08
CLN3-243ENST00000635973 MYH7P12883 1935 aa21.82■■□□□ 1.08
CLN3-243ENST00000635973 ZSWIM8A7E2V4 1837 aa21.81■■□□□ 1.08
CLN3-243ENST00000635973 TCRBV5S4A2TA0A5A2 114 aa21.81■■□□□ 1.08
CLN3-243ENST00000635973 TBC1D12O60347 775 aa21.81■■□□□ 1.08
CLN3-243ENST00000635973 HOXD10P28358 340 aa21.81■■□□□ 1.08
CLN3-243ENST00000635973 PRMT2P55345 433 aa21.81■■□□□ 1.08
CLN3-243ENST00000635973 UBE3CQ15386 1083 aa21.81■■□□□ 1.08
CLN3-243ENST00000635973 C17orf99Q6UX52 265 aa21.81■■□□□ 1.08
CLN3-243ENST00000635973 EVI5LQ96CN4 794 aa21.81■■□□□ 1.08
CLN3-243ENST00000635973 ARHGAP39Q9C0H5 1083 aa21.81■■□□□ 1.08
CLN3-243ENST00000635973 OSBPL5Q9H0X9 879 aaPredicted RBP21.81■■□□□ 1.08
CLN3-243ENST00000635973 OSBPL3Q9H4L5 887 aa21.81■■□□□ 1.08
CLN3-243ENST00000635973 PPP4R2Q9NY27 417 aa21.81■■□□□ 1.08
CLN3-243ENST00000635973 RBBP6Q7Z6E9 1792 aaKnown RBP21.81■■□□□ 1.08
CLN3-243ENST00000635973 A0A0G2JLL6 359 aaPredicted RBP21.8■■□□□ 1.08
CLN3-243ENST00000635973 FMNL1O95466 1100 aaPredicted RBP21.8■■□□□ 1.08
CLN3-243ENST00000635973 ZFYP08048 801 aaPredicted RBP21.8■■□□□ 1.08
CLN3-243ENST00000635973 SLFNL1Q499Z3 407 aa21.8■■□□□ 1.08
CLN3-243ENST00000635973 PRRT2Q7Z6L0 340 aaPredicted RBP21.8■■□□□ 1.08
CLN3-243ENST00000635973 AFG3L2Q9Y4W6 797 aa21.8■■□□□ 1.08
CLN3-243ENST00000635973 ATAD5Q96QE3 1844 aa21.8■■□□□ 1.08
CLN3-243ENST00000635973 PTPRFP10586 1907 aa21.79■■□□□ 1.08
CLN3-243ENST00000635973 POTEFA5A3E0 1075 aa21.79■■□□□ 1.08
CLN3-243ENST00000635973 TRIM75PA6NK02 468 aa21.79■■□□□ 1.08
CLN3-243ENST00000635973 RNF113AO15541 343 aaKnown RBP21.79■■□□□ 1.08
CLN3-243ENST00000635973 PSMC4P43686 418 aa21.79■■□□□ 1.08
CLN3-243ENST00000635973 USP5P45974 858 aa21.79■■□□□ 1.08
CLN3-243ENST00000635973 MOGSQ13724 837 aa21.79■■□□□ 1.08
CLN3-243ENST00000635973 SLC4A8Q2Y0W8 1093 aa21.79■■□□□ 1.08
CLN3-243ENST00000635973 TGFBRAP1Q8WUH2 860 aa21.79■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms