RNA–Protein interactions for RNA: ENST00000632758.1

LIMS4-203, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best)

Gene LIMS4, Length 1,580 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-203ENST00000632758 UPF3BQ9BZI7 483 aaKnown RBP17.52■□□□□ 0.39
LIMS4-203ENST00000632758 ATRNL1Q5VV63 1379 aa17.51■□□□□ 0.39
LIMS4-203ENST00000632758 FAM196BA6NMK8 535 aa17.51■□□□□ 0.39
LIMS4-203ENST00000632758 B4E1Z4 1266 aa17.51■□□□□ 0.39
LIMS4-203ENST00000632758 HLA-DOAP06340 250 aa17.51■□□□□ 0.39
LIMS4-203ENST00000632758 FGRP09769 529 aa17.51■□□□□ 0.39
LIMS4-203ENST00000632758 GABPAQ06546 454 aa17.51■□□□□ 0.39
LIMS4-203ENST00000632758 TNFAIP1Q13829 316 aa17.51■□□□□ 0.39
LIMS4-203ENST00000632758 KRT32Q14532 448 aa17.51■□□□□ 0.39
LIMS4-203ENST00000632758 RRP12Q5JTH9 1297 aaKnown RBP17.51■□□□□ 0.39
LIMS4-203ENST00000632758 APOBEC3FQ8IUX4 373 aaKnown RBP17.51■□□□□ 0.39
LIMS4-203ENST00000632758 CSRNP1Q96S65 589 aa17.51■□□□□ 0.39
LIMS4-203ENST00000632758 TOMM22Q9NS69 142 aa17.51■□□□□ 0.39
LIMS4-203ENST00000632758 PI4KBQ9UBF8 816 aa17.51■□□□□ 0.39
LIMS4-203ENST00000632758 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.51■□□□□ 0.39
LIMS4-203ENST00000632758 ECM29Q5VYK3 1845 aa17.51■□□□□ 0.39
LIMS4-203ENST00000632758 SLC3A2P08195 630 aaKnown RBP17.5■□□□□ 0.39
LIMS4-203ENST00000632758 CASTP20810 708 aaKnown RBP17.5■□□□□ 0.39
LIMS4-203ENST00000632758 CDK8P49336 464 aa17.5■□□□□ 0.39
LIMS4-203ENST00000632758 C16orf86Q6ZW13 317 aa17.5■□□□□ 0.39
LIMS4-203ENST00000632758 PNMA8AQ86V59 439 aaPredicted RBP17.5■□□□□ 0.39
LIMS4-203ENST00000632758 DCPSQ96C86 337 aaKnown RBP17.5■□□□□ 0.39
LIMS4-203ENST00000632758 DNAJC18Q9H819 358 aa17.5■□□□□ 0.39
LIMS4-203ENST00000632758 ZSWIM6Q9HCJ5 1215 aa17.5■□□□□ 0.39
LIMS4-203ENST00000632758 SERPINB13Q9UIV8 391 aa17.5■□□□□ 0.39
LIMS4-203ENST00000632758 RBM19Q9Y4C8 960 aaKnown RBP17.5■□□□□ 0.39
LIMS4-203ENST00000632758 NAV1Q8NEY1 1877 aa17.5■□□□□ 0.39
LIMS4-203ENST00000632758 FOCADQ5VW36 1801 aa17.5■□□□□ 0.39
LIMS4-203ENST00000632758 PITPNM2Q9BZ72 1349 aa17.5■□□□□ 0.39
LIMS4-203ENST00000632758 NBPF12Q5TAG4 269 aaPredicted RBP17.49■□□□□ 0.39
LIMS4-203ENST00000632758 CHST3Q7LGC8 479 aa17.49■□□□□ 0.39
LIMS4-203ENST00000632758 FOXP4Q8IVH2 680 aaPredicted RBP17.49■□□□□ 0.39
LIMS4-203ENST00000632758 NCOA7Q8NI08 942 aa17.49■□□□□ 0.39
LIMS4-203ENST00000632758 ZC3H15Q8WU90 426 aaKnown RBP17.49■□□□□ 0.39
LIMS4-203ENST00000632758 TCEANC2Q96MN5 208 aa17.49■□□□□ 0.39
LIMS4-203ENST00000632758 TM6SF1Q9BZW5 370 aa17.49■□□□□ 0.39
LIMS4-203ENST00000632758 RNF41Q9H4P4 317 aaPredicted RBP17.49■□□□□ 0.39
LIMS4-203ENST00000632758 CLEC11AQ9Y240 323 aa17.49■□□□□ 0.39
LIMS4-203ENST00000632758 ROBO3Q96MS0 1386 aa17.49■□□□□ 0.39
LIMS4-203ENST00000632758 DDX60LQ5H9U9 1706 aaKnown RBP17.49■□□□□ 0.39
LIMS4-203ENST00000632758 ADM5C9JUS6 153 aa17.49■□□□□ 0.39
LIMS4-203ENST00000632758 PSMA5P28066 241 aa17.49■□□□□ 0.39
LIMS4-203ENST00000632758 PDE4BQ07343 736 aa17.49■□□□□ 0.39
LIMS4-203ENST00000632758 TRDNQ13061 729 aa17.49■□□□□ 0.39
LIMS4-203ENST00000632758 CYB5R4Q7L1T6 521 aa17.49■□□□□ 0.39
LIMS4-203ENST00000632758 MIGA2Q7L4E1 593 aa17.49■□□□□ 0.39
LIMS4-203ENST00000632758 METTL16Q86W50 562 aaKnown RBP17.49■□□□□ 0.39
LIMS4-203ENST00000632758 MB21D2Q8IYB1 491 aaPredicted RBP17.49■□□□□ 0.39
LIMS4-203ENST00000632758 CRACR2BQ8N4Y2 399 aaPredicted RBP17.49■□□□□ 0.39
LIMS4-203ENST00000632758 EHD4Q9H223 541 aa17.49■□□□□ 0.39
LIMS4-203ENST00000632758 MKNK2Q9HBH9 465 aa17.49■□□□□ 0.39
LIMS4-203ENST00000632758 ZSWIM5Q9P217 1185 aa17.49■□□□□ 0.39
LIMS4-203ENST00000632758 COL2A1P02458 1487 aaPredicted RBP17.48■□□□□ 0.39
LIMS4-203ENST00000632758 ORC4O43929 436 aa17.48■□□□□ 0.39
LIMS4-203ENST00000632758 KDM4AO75164 1064 aa17.48■□□□□ 0.39
LIMS4-203ENST00000632758 SHMT1P34896 483 aa17.48■□□□□ 0.39
LIMS4-203ENST00000632758 NEK4P51957 841 aa17.48■□□□□ 0.39
LIMS4-203ENST00000632758 FAM47AQ5JRC9 791 aa17.48■□□□□ 0.39
LIMS4-203ENST00000632758 BLOC1S2Q6QNY1 142 aa17.48■□□□□ 0.39
LIMS4-203ENST00000632758 RUFY3Q7L099 469 aa17.48■□□□□ 0.39
LIMS4-203ENST00000632758 RALYLQ86SE5 291 aaKnown RBP17.48■□□□□ 0.39
LIMS4-203ENST00000632758 USP48Q86UV5 1035 aa17.48■□□□□ 0.39
LIMS4-203ENST00000632758 KRT23Q9C075 422 aa17.48■□□□□ 0.39
LIMS4-203ENST00000632758 SCN4AP35499 1836 aa17.48■□□□□ 0.39
LIMS4-203ENST00000632758 MYH1P12882 1939 aa17.47■□□□□ 0.39
LIMS4-203ENST00000632758 RANBP6O60518 1105 aaKnown RBP17.47■□□□□ 0.39
LIMS4-203ENST00000632758 RASA1P20936 1047 aa17.47■□□□□ 0.39
LIMS4-203ENST00000632758 RPS6KB1P23443 525 aa17.47■□□□□ 0.39
LIMS4-203ENST00000632758 ANTXR2P58335 489 aa17.47■□□□□ 0.39
LIMS4-203ENST00000632758 EXOSC10Q01780 885 aaKnown RBP17.47■□□□□ 0.39
LIMS4-203ENST00000632758 RABEP1Q15276 862 aa17.47■□□□□ 0.39
LIMS4-203ENST00000632758 KRT26Q7Z3Y9 468 aa17.47■□□□□ 0.39
LIMS4-203ENST00000632758 SULF1Q8IWU6 871 aa17.47■□□□□ 0.39
LIMS4-203ENST00000632758 LRRC2Q9BYS8 371 aa17.47■□□□□ 0.39
LIMS4-203ENST00000632758 CNNM2Q9H8M5 875 aa17.47■□□□□ 0.39
LIMS4-203ENST00000632758 CYP46A1Q9Y6A2 500 aa17.47■□□□□ 0.39
LIMS4-203ENST00000632758 PCP11498 1178 aaKnown RBP17.46■□□□□ 0.39
LIMS4-203ENST00000632758 RRP1BQ14684 758 aaKnown RBP17.46■□□□□ 0.39
LIMS4-203ENST00000632758 MAP1SQ66K74 1059 aaPredicted RBP17.46■□□□□ 0.39
LIMS4-203ENST00000632758 DHX32Q7L7V1 743 aaKnown RBP17.46■□□□□ 0.39
LIMS4-203ENST00000632758 ZNF444Q8N0Y2 327 aaPredicted RBP17.46■□□□□ 0.39
LIMS4-203ENST00000632758 GLIS2Q9BZE0 524 aaPredicted RBP17.46■□□□□ 0.39
LIMS4-203ENST00000632758 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.46■□□□□ 0.39
LIMS4-203ENST00000632758 TFAP4Q01664 338 aa17.45■□□□□ 0.38
LIMS4-203ENST00000632758 ESR2Q92731 530 aa17.45■□□□□ 0.38
LIMS4-203ENST00000632758 ZKSCAN3Q9BRR0 538 aa17.45■□□□□ 0.38
LIMS4-203ENST00000632758 GPHNQ9NQX3 736 aaPredicted RBP17.45■□□□□ 0.38
LIMS4-203ENST00000632758 PDRG1Q9NUG6 133 aa17.45■□□□□ 0.38
LIMS4-203ENST00000632758 SWAP70Q9UH65 585 aa17.45■□□□□ 0.38
LIMS4-203ENST00000632758 FZD1Q9UP38 647 aa17.45■□□□□ 0.38
LIMS4-203ENST00000632758 PRC1O43663 620 aa17.45■□□□□ 0.38
LIMS4-203ENST00000632758 TBC1D12O60347 775 aa17.45■□□□□ 0.38
LIMS4-203ENST00000632758 CD2BP2O95400 341 aaKnown RBP17.45■□□□□ 0.38
LIMS4-203ENST00000632758 HMGB1P09429 215 aaKnown RBP17.45■□□□□ 0.38
LIMS4-203ENST00000632758 MCM5P33992 734 aa17.45■□□□□ 0.38
LIMS4-203ENST00000632758 MAP3K10Q02779 954 aa17.45■□□□□ 0.38
LIMS4-203ENST00000632758 TATDN1Q6P1N9 297 aa17.45■□□□□ 0.38
LIMS4-203ENST00000632758 TTC14Q96N46 770 aa17.45■□□□□ 0.38
LIMS4-203ENST00000632758 LARP6Q9BRS8 491 aaKnown RBP17.45■□□□□ 0.38
LIMS4-203ENST00000632758 TRIM34Q9BYJ4 488 aa17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms