RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 PPP1R2P41236 205 aa12.75□□□□□ -0.37
CLIP1-219ENST00000620786 PABPC4Q13310 644 aaKnown RBP eCLIP12.75□□□□□ -0.37
CLIP1-219ENST00000620786 KIAA0825Q8IV33 1275 aa12.75□□□□□ -0.37
CLIP1-219ENST00000620786 KBTBD3Q8NAB2 608 aa12.75□□□□□ -0.37
CLIP1-219ENST00000620786 SNX21Q969T3 373 aa12.75□□□□□ -0.37
CLIP1-219ENST00000620786 NPHP4O75161 1426 aaPredicted RBP12.75□□□□□ -0.37
CLIP1-219ENST00000620786 TYRO3Q06418 890 aa12.75□□□□□ -0.37
CLIP1-219ENST00000620786 CALCRLQ16602 461 aa12.75□□□□□ -0.37
CLIP1-219ENST00000620786 NLGN1Q8N2Q7 840 aa12.75□□□□□ -0.37
CLIP1-219ENST00000620786 SNX29Q8TEQ0 813 aa12.75□□□□□ -0.37
CLIP1-219ENST00000620786 CHURC1Q8WUH1 139 aa12.75□□□□□ -0.37
CLIP1-219ENST00000620786 SNX16P57768 344 aa12.75□□□□□ -0.37
CLIP1-219ENST00000620786 FAM196AQ6ZSG2 479 aa12.75□□□□□ -0.37
CLIP1-219ENST00000620786 PLEKHG3A1L390 1219 aa12.74□□□□□ -0.37
CLIP1-219ENST00000620786 CTAGE9A4FU28 777 aa12.74□□□□□ -0.37
CLIP1-219ENST00000620786 KRT19P08727 400 aa12.74□□□□□ -0.37
CLIP1-219ENST00000620786 PPP1R7Q15435 360 aa12.74□□□□□ -0.37
CLIP1-219ENST00000620786 MYCT1Q8N699 235 aa12.74□□□□□ -0.37
CLIP1-219ENST00000620786 GLG1Q92896 1179 aa12.74□□□□□ -0.37
CLIP1-219ENST00000620786 NCOA5Q9HCD5 579 aaKnown RBP12.74□□□□□ -0.37
CLIP1-219ENST00000620786 DNM3Q9UQ16 869 aa12.74□□□□□ -0.37
CLIP1-219ENST00000620786 YEATS2Q9ULM3 1422 aa12.74□□□□□ -0.37
CLIP1-219ENST00000620786 DAPK3O43293 454 aa12.74□□□□□ -0.37
CLIP1-219ENST00000620786 PPARAQ07869 468 aa12.74□□□□□ -0.37
CLIP1-219ENST00000620786 SEL1L2Q5TEA6 688 aa12.74□□□□□ -0.37
CLIP1-219ENST00000620786 CAPZA3Q96KX2 299 aa12.74□□□□□ -0.37
CLIP1-219ENST00000620786 MLXIPQ9HAP2 919 aa12.74□□□□□ -0.37
CLIP1-219ENST00000620786 A0A1B0GVL5 298 aa12.74□□□□□ -0.37
CLIP1-219ENST00000620786 SORBS3O60504 671 aa12.74□□□□□ -0.37
CLIP1-219ENST00000620786 TNFAIP3P21580 790 aa12.74□□□□□ -0.37
CLIP1-219ENST00000620786 USP26Q9BXU7 913 aa12.74□□□□□ -0.37
CLIP1-219ENST00000620786 GUCA1BQ9UMX6 200 aa12.74□□□□□ -0.37
CLIP1-219ENST00000620786 GYG1P46976 350 aa12.74□□□□□ -0.37
CLIP1-219ENST00000620786 RASA3Q14644 834 aa12.74□□□□□ -0.37
CLIP1-219ENST00000620786 C6orf163Q5TEZ5 329 aa12.74□□□□□ -0.37
CLIP1-219ENST00000620786 EP400NLQ6ZTU2 488 aa12.74□□□□□ -0.37
CLIP1-219ENST00000620786 HACE1Q8IYU2 909 aa12.74□□□□□ -0.37
CLIP1-219ENST00000620786 LRWD1Q9UFC0 647 aa12.74□□□□□ -0.37
CLIP1-219ENST00000620786 AOX1Q06278 1338 aa12.74□□□□□ -0.37
CLIP1-219ENST00000620786 MLH3Q9UHC1 1453 aa12.74□□□□□ -0.37
CLIP1-219ENST00000620786 ATP2A2P16615 1042 aaKnown RBP12.73□□□□□ -0.37
CLIP1-219ENST00000620786 CRKLP46109 303 aaKnown RBP12.73□□□□□ -0.37
CLIP1-219ENST00000620786 KIAA1524Q8TCG1 905 aa12.73□□□□□ -0.37
CLIP1-219ENST00000620786 DNAI1Q9UI46 699 aa12.73□□□□□ -0.37
CLIP1-219ENST00000620786 PZPP20742 1482 aa12.73□□□□□ -0.37
CLIP1-219ENST00000620786 CFAP58Q5T655 872 aa12.73□□□□□ -0.37
CLIP1-219ENST00000620786 SERPINA10Q9UK55 444 aa12.73□□□□□ -0.37
CLIP1-219ENST00000620786 ATL3Q6DD88 541 aa12.73□□□□□ -0.37
CLIP1-219ENST00000620786 KRT27Q7Z3Y8 459 aa12.73□□□□□ -0.37
CLIP1-219ENST00000620786 NCAPG2Q86XI2 1143 aa12.73□□□□□ -0.37
CLIP1-219ENST00000620786 FAM107BQ9H098 131 aa12.73□□□□□ -0.37
CLIP1-219ENST00000620786 LUC7L2Q9Y383 392 aaKnown RBP12.73□□□□□ -0.37
CLIP1-219ENST00000620786 PAXBP1Q9Y5B6 917 aa12.73□□□□□ -0.37
CLIP1-219ENST00000620786 TESPA1A2RU30 521 aaPredicted RBP12.73□□□□□ -0.37
CLIP1-219ENST00000620786 GNPTABQ3T906 1256 aa12.73□□□□□ -0.37
CLIP1-219ENST00000620786 LIN9Q5TKA1 542 aa12.73□□□□□ -0.37
CLIP1-219ENST00000620786 CCDC186Q7Z3E2 898 aa12.73□□□□□ -0.37
CLIP1-219ENST00000620786 METTL13Q8N6R0 699 aa12.73□□□□□ -0.37
CLIP1-219ENST00000620786 ZNF830Q96NB3 372 aaPredicted RBP12.73□□□□□ -0.37
CLIP1-219ENST00000620786 FRMPD2Q68DX3 1309 aaPredicted RBP12.73□□□□□ -0.37
CLIP1-219ENST00000620786 LOC102724428A0A0B4J2F2 783 aa12.73□□□□□ -0.37
CLIP1-219ENST00000620786 ALAS1P13196 640 aa12.73□□□□□ -0.37
CLIP1-219ENST00000620786 ARID4AP29374 1257 aaPredicted RBP12.73□□□□□ -0.37
CLIP1-219ENST00000620786 SIK1P57059 783 aa12.73□□□□□ -0.37
CLIP1-219ENST00000620786 OTUD7AQ8TE49 926 aaPredicted RBP12.73□□□□□ -0.37
CLIP1-219ENST00000620786 TBC1D7Q9P0N9 293 aa12.73□□□□□ -0.37
CLIP1-219ENST00000620786 ODF2LQ9ULJ1 636 aa12.73□□□□□ -0.37
CLIP1-219ENST00000620786 TRPC6Q9Y210 931 aa12.73□□□□□ -0.37
CLIP1-219ENST00000620786 PRPF6O94906 941 aaKnown RBP12.72□□□□□ -0.37
CLIP1-219ENST00000620786 MXRA7P84157 204 aa12.72□□□□□ -0.37
CLIP1-219ENST00000620786 ANO1Q5XXA6 986 aa12.72□□□□□ -0.37
CLIP1-219ENST00000620786 TTLL7Q6ZT98 887 aa12.72□□□□□ -0.37
CLIP1-219ENST00000620786 DIS3L2Q8IYB7 885 aaKnown RBP12.72□□□□□ -0.37
CLIP1-219ENST00000620786 ZBTB38Q8NAP3 1195 aaPredicted RBP12.72□□□□□ -0.37
CLIP1-219ENST00000620786 ZNF526Q8TF50 670 aaPredicted RBP12.72□□□□□ -0.37
CLIP1-219ENST00000620786 NOX5Q96PH1 765 aa12.72□□□□□ -0.37
CLIP1-219ENST00000620786 TSGA10Q9BZW7 698 aa12.72□□□□□ -0.37
CLIP1-219ENST00000620786 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.72□□□□□ -0.37
CLIP1-219ENST00000620786 SAMD9Q5K651 1589 aa12.72□□□□□ -0.37
CLIP1-219ENST00000620786 BTDP43251 543 aa12.72□□□□□ -0.37
CLIP1-219ENST00000620786 KMT5BQ4FZB7 885 aa12.72□□□□□ -0.37
CLIP1-219ENST00000620786 LEO1Q8WVC0 666 aaPredicted RBP12.72□□□□□ -0.37
CLIP1-219ENST00000620786 STMN4Q9H169 189 aaPredicted RBP12.72□□□□□ -0.37
CLIP1-219ENST00000620786 IFNKQ9P0W0 207 aa12.72□□□□□ -0.37
CLIP1-219ENST00000620786 TRIM35Q9UPQ4 493 aa12.72□□□□□ -0.37
CLIP1-219ENST00000620786 KDRP35968 1356 aa12.72□□□□□ -0.37
CLIP1-219ENST00000620786 PNMA6EA0A0J9YXQ4 647 aa12.72□□□□□ -0.37
CLIP1-219ENST00000620786 KCNQ3O43525 872 aa12.72□□□□□ -0.37
CLIP1-219ENST00000620786 OTUD6AQ7L8S5 288 aa12.72□□□□□ -0.37
CLIP1-219ENST00000620786 MIER3Q7Z3K6 550 aa12.72□□□□□ -0.37
CLIP1-219ENST00000620786 ZNF710Q8N1W2 664 aa12.72□□□□□ -0.37
CLIP1-219ENST00000620786 MTUS1Q9ULD2 1270 aa12.72□□□□□ -0.37
CLIP1-219ENST00000620786 E7EVH7 732 aa12.72□□□□□ -0.37
CLIP1-219ENST00000620786 KARSQ15046 597 aaKnown RBP12.72□□□□□ -0.37
CLIP1-219ENST00000620786 OTUD7BQ6GQQ9 843 aa12.72□□□□□ -0.37
CLIP1-219ENST00000620786 PHKBQ93100 1093 aa12.72□□□□□ -0.37
CLIP1-219ENST00000620786 SNX14Q9Y5W7 946 aa12.72□□□□□ -0.37
CLIP1-219ENST00000620786 GCNT3O95395 438 aa12.71□□□□□ -0.37
CLIP1-219ENST00000620786 CERKLQ49MI3 558 aaPredicted RBP12.71□□□□□ -0.37
CLIP1-219ENST00000620786 DYMQ7RTS9 669 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms