RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 CCNT1O60563 726 aaKnown RBP15.7■□□□□ 0.1
CPSF1-212ENST00000616140 KIF4AO95239 1232 aa15.7■□□□□ 0.1
CPSF1-212ENST00000616140 C10orf67Q8IYJ2 551 aa15.7■□□□□ 0.1
CPSF1-212ENST00000616140 DDX17Q92841 729 aaKnown RBP15.7■□□□□ 0.1
CPSF1-212ENST00000616140 SELENOSQ9BQE4 189 aa15.7■□□□□ 0.1
CPSF1-212ENST00000616140 MYCNP04198 464 aaPredicted RBP15.7■□□□□ 0.1
CPSF1-212ENST00000616140 LTKP29376 864 aa15.7■□□□□ 0.1
CPSF1-212ENST00000616140 TTLL7Q6ZT98 887 aa15.7■□□□□ 0.1
CPSF1-212ENST00000616140 FCHSD1Q86WN1 690 aa15.7■□□□□ 0.1
CPSF1-212ENST00000616140 CCDC24Q8N4L8 307 aa15.7■□□□□ 0.1
CPSF1-212ENST00000616140 PPP1R14CQ8TAE6 165 aa15.7■□□□□ 0.1
CPSF1-212ENST00000616140 SLF1Q9BQI6 1058 aa15.7■□□□□ 0.1
CPSF1-212ENST00000616140 OSBPL3Q9H4L5 887 aa15.7■□□□□ 0.1
CPSF1-212ENST00000616140 ANTXR1Q9H6X2 564 aa15.7■□□□□ 0.1
CPSF1-212ENST00000616140 SLTMQ9NWH9 1034 aaKnown RBP eCLIP15.7■□□□□ 0.1
CPSF1-212ENST00000616140 SERTAD1Q9UHV2 236 aa15.7■□□□□ 0.1
CPSF1-212ENST00000616140 NSRP1Q9H0G5 558 aaKnown RBP15.7■□□□□ 0.1
CPSF1-212ENST00000616140 WWC3Q9ULE0 1092 aa15.7■□□□□ 0.1
CPSF1-212ENST00000616140 RGS12O14924 1447 aa15.7■□□□□ 0.1
CPSF1-212ENST00000616140 PFKFB2O60825 505 aa15.69■□□□□ 0.1
CPSF1-212ENST00000616140 ADKP55263 362 aaKnown RBP15.69■□□□□ 0.1
CPSF1-212ENST00000616140 GSTA5Q7RTV2 222 aa15.69■□□□□ 0.1
CPSF1-212ENST00000616140 SMAP1Q8IYB5 467 aaPredicted RBP15.69■□□□□ 0.1
CPSF1-212ENST00000616140 CMTR1Q8N1G2 835 aaKnown RBP15.69■□□□□ 0.1
CPSF1-212ENST00000616140 PSMB7Q99436 277 aa15.69■□□□□ 0.1
CPSF1-212ENST00000616140 TSGA10Q9BZW7 698 aa15.69■□□□□ 0.1
CPSF1-212ENST00000616140 LSG1Q9H089 658 aaKnown RBP15.69■□□□□ 0.1
CPSF1-212ENST00000616140 IQCGQ9H095 443 aaKnown RBP15.69■□□□□ 0.1
CPSF1-212ENST00000616140 LRWD1Q9UFC0 647 aa15.69■□□□□ 0.1
CPSF1-212ENST00000616140 UFL1O94874 794 aa15.69■□□□□ 0.1
CPSF1-212ENST00000616140 FGAP02671 866 aa15.69■□□□□ 0.1
CPSF1-212ENST00000616140 ZNF654Q8IZM8 581 aa15.69■□□□□ 0.1
CPSF1-212ENST00000616140 MAP4K1Q92918 833 aa15.69■□□□□ 0.1
CPSF1-212ENST00000616140 ERVK-7P63135 1459 aa15.69■□□□□ 0.1
CPSF1-212ENST00000616140 NF2P35240 595 aa15.69■□□□□ 0.1
CPSF1-212ENST00000616140 C8orf74Q6P047 294 aa15.69■□□□□ 0.1
CPSF1-212ENST00000616140 SIRT2Q8IXJ6 389 aa15.69■□□□□ 0.1
CPSF1-212ENST00000616140 CNBD1Q8NA66 436 aa15.69■□□□□ 0.1
CPSF1-212ENST00000616140 DDX12PQ92771 950 aa15.69■□□□□ 0.1
CPSF1-212ENST00000616140 EIF4G3O43432 1585 aaKnown RBP15.69■□□□□ 0.1
CPSF1-212ENST00000616140 MBD5Q9P267 1494 aa15.69■□□□□ 0.1
CPSF1-212ENST00000616140 CETN3O15182 167 aa15.68■□□□□ 0.1
CPSF1-212ENST00000616140 NONOQ15233 471 aaKnown RBP eCLIP15.68■□□□□ 0.1
CPSF1-212ENST00000616140 UTP14CQ5TAP6 766 aaKnown RBP15.68■□□□□ 0.1
CPSF1-212ENST00000616140 JAKMIP2Q96AA8 810 aa15.68■□□□□ 0.1
CPSF1-212ENST00000616140 BLZF1Q9H2G9 400 aa15.68■□□□□ 0.1
CPSF1-212ENST00000616140 MAGEA1P43355 309 aa15.68■□□□□ 0.1
CPSF1-212ENST00000616140 SP4Q02446 784 aa15.68■□□□□ 0.1
CPSF1-212ENST00000616140 PROSER3Q2NL68 480 aa15.68■□□□□ 0.1
CPSF1-212ENST00000616140 HERC4Q5GLZ8 1057 aaPredicted RBP15.68■□□□□ 0.1
CPSF1-212ENST00000616140 CCDC50Q8IVM0 306 aa15.68■□□□□ 0.1
CPSF1-212ENST00000616140 HAUS7Q99871 368 aa15.68■□□□□ 0.1
CPSF1-212ENST00000616140 ATP2A1O14983 1001 aa15.68■□□□□ 0.1
CPSF1-212ENST00000616140 ZNF827Q17R98 1081 aa15.68■□□□□ 0.1
CPSF1-212ENST00000616140 LRRC24Q50LG9 513 aa15.68■□□□□ 0.1
CPSF1-212ENST00000616140 CCDC121Q6ZUS5 278 aa15.68■□□□□ 0.1
CPSF1-212ENST00000616140 DYMQ7RTS9 669 aa15.68■□□□□ 0.1
CPSF1-212ENST00000616140 SNX29Q8TEQ0 813 aa15.68■□□□□ 0.1
CPSF1-212ENST00000616140 MTRF1LQ9UGC7 380 aaKnown RBP15.68■□□□□ 0.1
CPSF1-212ENST00000616140 KDRP35968 1356 aa15.68■□□□□ 0.1
CPSF1-212ENST00000616140 SAMD9Q5K651 1589 aa15.68■□□□□ 0.1
CPSF1-212ENST00000616140 ARID4AP29374 1257 aaPredicted RBP15.68■□□□□ 0.1
CPSF1-212ENST00000616140 DBNLQ9UJU6 430 aaKnown RBP15.68■□□□□ 0.1
CPSF1-212ENST00000616140 PCDHA7Q9UN72 937 aa15.68■□□□□ 0.1
CPSF1-212ENST00000616140 USP17L12C9JPN9 530 aa15.67■□□□□ 0.1
CPSF1-212ENST00000616140 USP17L21D6R901 530 aa15.67■□□□□ 0.1
CPSF1-212ENST00000616140 UBAP1LF5GYI3 381 aa15.67■□□□□ 0.1
CPSF1-212ENST00000616140 TOM1O60784 492 aa15.67■□□□□ 0.1
CPSF1-212ENST00000616140 TFAP4Q01664 338 aa15.67■□□□□ 0.1
CPSF1-212ENST00000616140 NOSTRINQ8IVI9 506 aa15.67■□□□□ 0.1
CPSF1-212ENST00000616140 ANKS4BQ8N8V4 417 aa15.67■□□□□ 0.1
CPSF1-212ENST00000616140 PKD2L1Q9P0L9 805 aa15.67■□□□□ 0.1
CPSF1-212ENST00000616140 ZNF215Q9UL58 517 aaPredicted RBP15.67■□□□□ 0.1
CPSF1-212ENST00000616140 TMEM2Q9UHN6 1383 aa15.67■□□□□ 0.1
CPSF1-212ENST00000616140 BTBD18B2RXH4 712 aa15.67■□□□□ 0.1
CPSF1-212ENST00000616140 CALCOCO2Q13137 446 aa15.67■□□□□ 0.1
CPSF1-212ENST00000616140 PDE6AP16499 860 aa15.67■□□□□ 0.1
CPSF1-212ENST00000616140 FERMT1Q9BQL6 677 aa15.67■□□□□ 0.1
CPSF1-212ENST00000616140 STMN4Q9H169 189 aaPredicted RBP15.67■□□□□ 0.1
CPSF1-212ENST00000616140 COPRSQ9NQ92 184 aa15.67■□□□□ 0.1
CPSF1-212ENST00000616140 TUBB2AQ13885 445 aa15.66■□□□□ 0.1
CPSF1-212ENST00000616140 ERCC6LQ2NKX8 1250 aa15.66■□□□□ 0.1
CPSF1-212ENST00000616140 FAM47AQ5JRC9 791 aa15.66■□□□□ 0.1
CPSF1-212ENST00000616140 FBXO18Q8NFZ0 1043 aa15.66■□□□□ 0.1
CPSF1-212ENST00000616140 WDR66Q8TBY9 1149 aa15.66■□□□□ 0.1
CPSF1-212ENST00000616140 UIMC1Q96RL1 719 aa15.66■□□□□ 0.1
CPSF1-212ENST00000616140 TUBB2BQ9BVA1 445 aa15.66■□□□□ 0.1
CPSF1-212ENST00000616140 MROH5Q6ZUA9 1318 aa15.66■□□□□ 0.1
CPSF1-212ENST00000616140 UBLCP1Q8WVY7 318 aaPredicted RBP15.66■□□□□ 0.1
CPSF1-212ENST00000616140 FAM212AQ96EL1 285 aa15.66■□□□□ 0.1
CPSF1-212ENST00000616140 EPB41P11171 864 aaKnown RBP15.66■□□□□ 0.1
CPSF1-212ENST00000616140 PHKG2P15735 406 aa15.66■□□□□ 0.1
CPSF1-212ENST00000616140 HPDP32754 393 aaPredicted RBP15.66■□□□□ 0.1
CPSF1-212ENST00000616140 RAD51AP2Q09MP3 1159 aa15.66■□□□□ 0.1
CPSF1-212ENST00000616140 TRAPPC3LQ5T215 181 aa15.66■□□□□ 0.1
CPSF1-212ENST00000616140 CEP57Q86XR8 500 aa15.66■□□□□ 0.1
CPSF1-212ENST00000616140 NELFBQ8WX92 580 aa15.66■□□□□ 0.1
CPSF1-212ENST00000616140 SECISBP2LQ93073 1101 aaKnown RBP15.66■□□□□ 0.1
CPSF1-212ENST00000616140 DESI2Q9BSY9 194 aa15.66■□□□□ 0.1
CPSF1-212ENST00000616140 TLR7Q9NYK1 1049 aaKnown RBP15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms