RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 IDI2Q9BXS1 227 aa16.81■□□□□ 0.28
USP39-220ENST00000613444 LY9Q9HBG7 655 aa16.81■□□□□ 0.28
USP39-220ENST00000613444 MYH8P13535 1937 aa16.8■□□□□ 0.28
USP39-220ENST00000613444 PFKFB2O60825 505 aa16.8■□□□□ 0.28
USP39-220ENST00000613444 POLR3DP05423 398 aaPredicted RBP16.8■□□□□ 0.28
USP39-220ENST00000613444 PDIA3P30101 505 aaKnown RBP16.8■□□□□ 0.28
USP39-220ENST00000613444 RBM5P52756 815 aaKnown RBP eCLIP16.8■□□□□ 0.28
USP39-220ENST00000613444 PICALMQ13492 652 aa16.8■□□□□ 0.28
USP39-220ENST00000613444 OSBPL5Q9H0X9 879 aaPredicted RBP16.8■□□□□ 0.28
USP39-220ENST00000613444 TOMM22Q9NS69 142 aa16.8■□□□□ 0.28
USP39-220ENST00000613444 SLC3A2P08195 630 aaKnown RBP16.79■□□□□ 0.28
USP39-220ENST00000613444 LIFRP42702 1097 aa16.79■□□□□ 0.28
USP39-220ENST00000613444 SCRN1Q12765 414 aa16.79■□□□□ 0.28
USP39-220ENST00000613444 STK3Q13188 491 aa16.79■□□□□ 0.28
USP39-220ENST00000613444 SGMS1Q86VZ5 419 aa16.79■□□□□ 0.28
USP39-220ENST00000613444 FAM198AQ9UFP1 575 aa16.79■□□□□ 0.28
USP39-220ENST00000613444 SPDYE2BA6NHP3 402 aa16.79■□□□□ 0.28
USP39-220ENST00000613444 NPM3O75607 178 aaKnown RBP16.79■□□□□ 0.28
USP39-220ENST00000613444 SPDYE6P0CI01 402 aa16.79■□□□□ 0.28
USP39-220ENST00000613444 YBX3P16989 372 aaKnown RBP eCLIP16.79■□□□□ 0.286e-7■■□□□ 12.2
USP39-220ENST00000613444 CACNB3P54284 484 aa16.79■□□□□ 0.28
USP39-220ENST00000613444 PDE4BQ07343 736 aa16.79■□□□□ 0.28
USP39-220ENST00000613444 TNIP1Q15025 636 aa16.79■□□□□ 0.28
USP39-220ENST00000613444 ARHGAP27Q6ZUM4 889 aa16.79■□□□□ 0.28
USP39-220ENST00000613444 MTMR14Q8NCE2 650 aa16.79■□□□□ 0.28
USP39-220ENST00000613444 HPS5Q9UPZ3 1129 aa16.79■□□□□ 0.28
USP39-220ENST00000613444 SEC23AQ15436 765 aa16.78■□□□□ 0.28
USP39-220ENST00000613444 TMEM67Q5HYA8 995 aa16.78■□□□□ 0.28
USP39-220ENST00000613444 C16orf86Q6ZW13 317 aa16.78■□□□□ 0.28
USP39-220ENST00000613444 ZFPM1Q8IX07 1006 aa16.78■□□□□ 0.28
USP39-220ENST00000613444 AMOTL1Q8IY63 956 aa16.78■□□□□ 0.28
USP39-220ENST00000613444 SLC44A5Q8NCS7 719 aa16.78■□□□□ 0.28
USP39-220ENST00000613444 ZBED3Q96IU2 234 aaPredicted RBP16.78■□□□□ 0.28
USP39-220ENST00000613444 ZKSCAN3Q9BRR0 538 aa16.78■□□□□ 0.28
USP39-220ENST00000613444 TDRD3Q9H7E2 651 aaKnown RBP16.78■□□□□ 0.28
USP39-220ENST00000613444 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.78■□□□□ 0.28
USP39-220ENST00000613444 KLF18A0A0U1RQI7 1052 aa16.78■□□□□ 0.28
USP39-220ENST00000613444 IFIT3O14879 490 aaKnown RBP16.78■□□□□ 0.28
USP39-220ENST00000613444 RANBP6O60518 1105 aaKnown RBP16.78■□□□□ 0.28
USP39-220ENST00000613444 DTNBO60941 627 aa16.78■□□□□ 0.28
USP39-220ENST00000613444 GABPAQ06546 454 aa16.78■□□□□ 0.28
USP39-220ENST00000613444 OGFOD1Q8N543 542 aa16.78■□□□□ 0.28
USP39-220ENST00000613444 HDAC9Q9UKV0 1011 aa16.78■□□□□ 0.28
USP39-220ENST00000613444 SHTN1A0MZ66 631 aa16.77■□□□□ 0.28
USP39-220ENST00000613444 PKP1Q13835 747 aa16.77■□□□□ 0.28
USP39-220ENST00000613444 ZNF541Q9H0D2 1346 aa16.77■□□□□ 0.28
USP39-220ENST00000613444 LMNB1P20700 586 aa16.77■□□□□ 0.27
USP39-220ENST00000613444 NT5C2P49902 561 aa16.77■□□□□ 0.27
USP39-220ENST00000613444 CTDNEP1O95476 244 aa16.76■□□□□ 0.27
USP39-220ENST00000613444 RASA1P20936 1047 aa16.76■□□□□ 0.27
USP39-220ENST00000613444 RPS12P25398 132 aaKnown RBP16.76■□□□□ 0.27
USP39-220ENST00000613444 CDK8P49336 464 aa16.76■□□□□ 0.27
USP39-220ENST00000613444 ZNF280AP59817 542 aaPredicted RBP16.76■□□□□ 0.27
USP39-220ENST00000613444 RAB3GAP1Q15042 981 aa16.76■□□□□ 0.27
USP39-220ENST00000613444 DLGAP5Q15398 846 aa16.76■□□□□ 0.27
USP39-220ENST00000613444 FAM47AQ5JRC9 791 aa16.76■□□□□ 0.27
USP39-220ENST00000613444 APOA5Q6Q788 366 aa16.76■□□□□ 0.27
USP39-220ENST00000613444 SH3BP5LQ7L8J4 393 aa16.76■□□□□ 0.27
USP39-220ENST00000613444 TTC6Q86TZ1 520 aa16.76■□□□□ 0.27
USP39-220ENST00000613444 ENAHQ8N8S7 591 aaPredicted RBP16.76■□□□□ 0.27
USP39-220ENST00000613444 ZSCAN10Q96SZ4 725 aaPredicted RBP16.76■□□□□ 0.27
USP39-220ENST00000613444 TNKSO95271 1327 aa16.76■□□□□ 0.27
USP39-220ENST00000613444 EIF6P56537 245 aaKnown RBP16.75■□□□□ 0.27
USP39-220ENST00000613444 CCT2P78371 535 aaKnown RBP16.75■□□□□ 0.27
USP39-220ENST00000613444 NCOA5Q9HCD5 579 aaKnown RBP16.75■□□□□ 0.27
USP39-220ENST00000613444 ZDHHC9Q9Y397 364 aa16.75■□□□□ 0.27
USP39-220ENST00000613444 GOLGA8BA8MQT2 603 aa16.75■□□□□ 0.27
USP39-220ENST00000613444 MMP14P50281 582 aa16.75■□□□□ 0.27
USP39-220ENST00000613444 WTAPQ15007 396 aa16.75■□□□□ 0.27
USP39-220ENST00000613444 SART3Q15020 963 aaKnown RBP16.75■□□□□ 0.27
USP39-220ENST00000613444 DPF2Q92785 391 aa16.75■□□□□ 0.27
USP39-220ENST00000613444 UBAC1Q9BSL1 405 aa16.75■□□□□ 0.27
USP39-220ENST00000613444 SMC3Q9UQE7 1217 aa16.75■□□□□ 0.27
USP39-220ENST00000613444 COL2A1P02458 1487 aaPredicted RBP16.75■□□□□ 0.27
USP39-220ENST00000613444 DDTLA6NHG4 134 aaPredicted RBP16.74■□□□□ 0.27
USP39-220ENST00000613444 NMT2O60551 498 aa16.74■□□□□ 0.27
USP39-220ENST00000613444 GJB2P29033 226 aa16.74■□□□□ 0.27
USP39-220ENST00000613444 GMPSP49915 693 aaPredicted RBP16.74■□□□□ 0.27
USP39-220ENST00000613444 TCP10Q12799 353 aa16.74■□□□□ 0.27
USP39-220ENST00000613444 NID2Q14112 1375 aa16.74■□□□□ 0.27
USP39-220ENST00000613444 SPDYE2Q495Y8 402 aa16.74■□□□□ 0.27
USP39-220ENST00000613444 ATRNL1Q5VV63 1379 aa16.74■□□□□ 0.27
USP39-220ENST00000613444 SMARCC2Q8TAQ2 1214 aa16.74■□□□□ 0.27
USP39-220ENST00000613444 GREB1LQ9C091 1923 aaPredicted RBP16.74■□□□□ 0.27
USP39-220ENST00000613444 MKNK2Q9HBH9 465 aa16.74■□□□□ 0.27
USP39-220ENST00000613444 IL17RBQ9NRM6 502 aa16.74■□□□□ 0.27
USP39-220ENST00000613444 ZNF70Q9UC06 446 aaPredicted RBP16.74■□□□□ 0.27
USP39-220ENST00000613444 JAK2O60674 1132 aa16.74■□□□□ 0.27
USP39-220ENST00000613444 ENTPD3O75355 529 aa16.74■□□□□ 0.27
USP39-220ENST00000613444 TFAP4Q01664 338 aa16.74■□□□□ 0.27
USP39-220ENST00000613444 RCSD1Q6JBY9 416 aa16.74■□□□□ 0.27
USP39-220ENST00000613444 IQCA1Q86XH1 822 aa16.74■□□□□ 0.27
USP39-220ENST00000613444 RAB11FIP4Q86YS3 637 aa16.74■□□□□ 0.27
USP39-220ENST00000613444 TMTC2Q8N394 836 aa16.74■□□□□ 0.27
USP39-220ENST00000613444 NSUN7Q8NE18 718 aaKnown RBP16.74■□□□□ 0.27
USP39-220ENST00000613444 LLPHQ9BRT6 129 aaKnown RBP16.74■□□□□ 0.27
USP39-220ENST00000613444 EHD4Q9H223 541 aa16.74■□□□□ 0.27
USP39-220ENST00000613444 MYOZ2Q9NPC6 264 aa16.74■□□□□ 0.27
USP39-220ENST00000613444 ERICH2A1L162 156 aa16.73■□□□□ 0.27
USP39-220ENST00000613444 TSPY2A6NKD2 308 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms