RNA–Protein interactions for RNA: ENST00000611848.1

SMAD4-217, Transcript of SMAD family member 4, humanhuman

TSL 5

Gene SMAD4, Length 1,648 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-217ENST00000611848 MAP3K9P80192 1104 aa10.56□□□□□ -0.72
SMAD4-217ENST00000611848 SLFNL1Q499Z3 407 aa10.56□□□□□ -0.72
SMAD4-217ENST00000611848 CYP4F22Q6NT55 531 aa10.56□□□□□ -0.72
SMAD4-217ENST00000611848 MIGA2Q7L4E1 593 aa10.56□□□□□ -0.72
SMAD4-217ENST00000611848 LCORLQ8N3X6 602 aa10.56□□□□□ -0.72
SMAD4-217ENST00000611848 RILPL2Q969X0 211 aa10.56□□□□□ -0.72
SMAD4-217ENST00000611848 PI4KBQ9UBF8 816 aa10.56□□□□□ -0.72
SMAD4-217ENST00000611848 FZD1Q9UP38 647 aa10.56□□□□□ -0.72
SMAD4-217ENST00000611848 CEP350Q5VT06 3117 aa10.56□□□□□ -0.72
SMAD4-217ENST00000611848 HLA-DOAP06340 250 aa10.55□□□□□ -0.72
SMAD4-217ENST00000611848 ZMYM1Q5SVZ6 1142 aa10.55□□□□□ -0.72
SMAD4-217ENST00000611848 FOXP4Q8IVH2 680 aaPredicted RBP10.55□□□□□ -0.72
SMAD4-217ENST00000611848 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.55□□□□□ -0.72
SMAD4-217ENST00000611848 OSBP2Q969R2 916 aa10.55□□□□□ -0.72
SMAD4-217ENST00000611848 SNX21Q969T3 373 aa10.55□□□□□ -0.72
SMAD4-217ENST00000611848 SLC10A4Q96EP9 437 aa10.55□□□□□ -0.72
SMAD4-217ENST00000611848 WRNIP1Q96S55 665 aa10.55□□□□□ -0.72
SMAD4-217ENST00000611848 ARMT1Q9H993 441 aa10.55□□□□□ -0.72
SMAD4-217ENST00000611848 ATP8A2Q9NTI2 1148 aa10.55□□□□□ -0.72
SMAD4-217ENST00000611848 HERC5Q9UII4 1024 aaKnown RBP10.55□□□□□ -0.72
SMAD4-217ENST00000611848 ZNF112Q9UJU3 913 aa10.55□□□□□ -0.72
SMAD4-217ENST00000611848 NAV1Q8NEY1 1877 aa10.55□□□□□ -0.72
SMAD4-217ENST00000611848 OTOFQ9HC10 1997 aa10.55□□□□□ -0.72
SMAD4-217ENST00000611848 SLC10A3P09131 477 aa10.55□□□□□ -0.72
SMAD4-217ENST00000611848 GNAT2P19087 354 aa10.55□□□□□ -0.72
SMAD4-217ENST00000611848 MAP2K2P36507 400 aa10.55□□□□□ -0.72
SMAD4-217ENST00000611848 NOGQ13253 232 aa10.55□□□□□ -0.72
SMAD4-217ENST00000611848 TTC6Q86TZ1 520 aa10.55□□□□□ -0.72
SMAD4-217ENST00000611848 RASAL3Q86YV0 1011 aa10.55□□□□□ -0.72
SMAD4-217ENST00000611848 SDR42E1Q8WUS8 393 aa10.55□□□□□ -0.72
SMAD4-217ENST00000611848 STRBPQ96SI9 672 aaKnown RBP10.55□□□□□ -0.72
SMAD4-217ENST00000611848 KIF2CQ99661 725 aa10.55□□□□□ -0.72
SMAD4-217ENST00000611848 DCP1AQ9NPI6 582 aaPredicted RBP10.55□□□□□ -0.72
SMAD4-217ENST00000611848 PALD1Q9ULE6 856 aa10.55□□□□□ -0.72
SMAD4-217ENST00000611848 CSADQ9Y600 493 aa10.55□□□□□ -0.72
SMAD4-217ENST00000611848 BAZ2AQ9UIF9 1905 aaKnown RBP10.54□□□□□ -0.72
SMAD4-217ENST00000611848 FAM155AB1AL88 458 aaPredicted RBP10.54□□□□□ -0.72
SMAD4-217ENST00000611848 HIP1O00291 1037 aa10.54□□□□□ -0.72
SMAD4-217ENST00000611848 GPAA1O43292 621 aa10.54□□□□□ -0.72
SMAD4-217ENST00000611848 POLR3DP05423 398 aaPredicted RBP10.54□□□□□ -0.72
SMAD4-217ENST00000611848 GRM1Q13255 1194 aa10.54□□□□□ -0.72
SMAD4-217ENST00000611848 GIMAP6Q6P9H5 292 aa10.54□□□□□ -0.72
SMAD4-217ENST00000611848 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.54□□□□□ -0.72
SMAD4-217ENST00000611848 METTL16Q86W50 562 aaKnown RBP10.54□□□□□ -0.72
SMAD4-217ENST00000611848 JMYQ8N9B5 988 aa10.54□□□□□ -0.72
SMAD4-217ENST00000611848 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.54□□□□□ -0.72
SMAD4-217ENST00000611848 HELLSQ9NRZ9 838 aa10.54□□□□□ -0.72
SMAD4-217ENST00000611848 SLC4A4Q9Y6R1 1079 aa10.54□□□□□ -0.72
SMAD4-217ENST00000611848 SIPA1L1O43166 1804 aa10.53□□□□□ -0.72
SMAD4-217ENST00000611848 PHF20L1A8MW92 1017 aa10.53□□□□□ -0.72
SMAD4-217ENST00000611848 M0R2C6 588 aa10.53□□□□□ -0.72
SMAD4-217ENST00000611848 PRKAB2O43741 272 aa10.53□□□□□ -0.72
SMAD4-217ENST00000611848 SDSP20132 328 aa10.53□□□□□ -0.72
SMAD4-217ENST00000611848 DEKP35659 375 aaKnown RBP10.53□□□□□ -0.72
SMAD4-217ENST00000611848 VGLL4Q14135 290 aa10.53□□□□□ -0.72
SMAD4-217ENST00000611848 NOL9Q5SY16 702 aaKnown RBP10.53□□□□□ -0.72
SMAD4-217ENST00000611848 REM2Q8IYK8 340 aaPredicted RBP10.53□□□□□ -0.72
SMAD4-217ENST00000611848 CRACR2BQ8N4Y2 399 aaPredicted RBP10.53□□□□□ -0.72
SMAD4-217ENST00000611848 CLMNQ96JQ2 1002 aa10.53□□□□□ -0.72
SMAD4-217ENST00000611848 TRIM34Q9BYJ4 488 aa10.53□□□□□ -0.72
SMAD4-217ENST00000611848 EHD4Q9H223 541 aa10.53□□□□□ -0.72
SMAD4-217ENST00000611848 MCM9Q9NXL9 1143 aa10.53□□□□□ -0.72
SMAD4-217ENST00000611848 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.53□□□□□ -0.72
SMAD4-217ENST00000611848 SAP30BPQ9UHR5 308 aaKnown RBP10.53□□□□□ -0.72
SMAD4-217ENST00000611848 TAOK2Q9UL54 1235 aa10.53□□□□□ -0.72
SMAD4-217ENST00000611848 DDX60LQ5H9U9 1706 aaKnown RBP10.53□□□□□ -0.72
SMAD4-217ENST00000611848 PATL2C9JE40 543 aaKnown RBP10.52□□□□□ -0.73
SMAD4-217ENST00000611848 CTNND1O60716 968 aaKnown RBP10.52□□□□□ -0.73
SMAD4-217ENST00000611848 AOC2O75106 756 aa10.52□□□□□ -0.73
SMAD4-217ENST00000611848 ZBTB48P10074 688 aaPredicted RBP10.52□□□□□ -0.73
SMAD4-217ENST00000611848 INPP5BP32019 993 aa10.52□□□□□ -0.73
SMAD4-217ENST00000611848 MCMDC2Q4G0Z9 681 aa10.52□□□□□ -0.73
SMAD4-217ENST00000611848 SPRYD7Q5W111 196 aa10.52□□□□□ -0.73
SMAD4-217ENST00000611848 ERO1BQ86YB8 467 aa10.52□□□□□ -0.73
SMAD4-217ENST00000611848 AMOTL1Q8IY63 956 aa10.52□□□□□ -0.73
SMAD4-217ENST00000611848 ZKSCAN4Q969J2 545 aaPredicted RBP10.52□□□□□ -0.73
SMAD4-217ENST00000611848 WNK4Q96J92 1243 aa10.52□□□□□ -0.73
SMAD4-217ENST00000611848 SEC62Q99442 399 aaKnown RBP10.52□□□□□ -0.73
SMAD4-217ENST00000611848 ELP3Q9H9T3 547 aa10.52□□□□□ -0.73
SMAD4-217ENST00000611848 SERPINB13Q9UIV8 391 aa10.52□□□□□ -0.73
SMAD4-217ENST00000611848 THSD7BQ9C0I4 1608 aa10.51□□□□□ -0.73
SMAD4-217ENST00000611848 MAP2K1Q02750 393 aaPredicted RBP10.51□□□□□ -0.73
SMAD4-217ENST00000611848 NACAP1Q9BZK3 213 aa10.51□□□□□ -0.73
SMAD4-217ENST00000611848 SNCAIPQ9Y6H5 919 aa10.51□□□□□ -0.73
SMAD4-217ENST00000611848 A0A0D9SFI3 127 aa10.51□□□□□ -0.73
SMAD4-217ENST00000611848 SPDYE5A6NIY4 337 aa10.51□□□□□ -0.73
SMAD4-217ENST00000611848 GSG1L2A8MUP6 293 aa10.51□□□□□ -0.73
SMAD4-217ENST00000611848 USP17L12C9JPN9 530 aa10.51□□□□□ -0.73
SMAD4-217ENST00000611848 USP17L21D6R901 530 aa10.51□□□□□ -0.73
SMAD4-217ENST00000611848 APPP05067 770 aa10.51□□□□□ -0.73
SMAD4-217ENST00000611848 SLURP2P0DP57 97 aa10.51□□□□□ -0.73
SMAD4-217ENST00000611848 PLCD1P51178 756 aa10.51□□□□□ -0.73
SMAD4-217ENST00000611848 KIF23Q02241 960 aaPredicted RBP10.51□□□□□ -0.73
SMAD4-217ENST00000611848 PPATQ06203 517 aa10.51□□□□□ -0.73
SMAD4-217ENST00000611848 NMIQ13287 307 aaPredicted RBP10.51□□□□□ -0.73
SMAD4-217ENST00000611848 SBK1Q52WX2 424 aa10.51□□□□□ -0.73
SMAD4-217ENST00000611848 C12orf60Q5U649 245 aa10.51□□□□□ -0.73
SMAD4-217ENST00000611848 HSCBQ8IWL3 235 aa10.51□□□□□ -0.73
SMAD4-217ENST00000611848 SCYL3Q8IZE3 742 aa10.51□□□□□ -0.73
SMAD4-217ENST00000611848 OPTNQ96CV9 577 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms