RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 COL19A1Q14993 1142 aa7.25□□□□□ -1.25
LINC00540-201ENST00000611481 PEAR1Q5VY43 1037 aaPredicted RBP7.25□□□□□ -1.25
LINC00540-201ENST00000611481 NRSN2Q9GZP1 204 aa7.25□□□□□ -1.25
LINC00540-201ENST00000611481 PAK6Q9NQU5 681 aaPredicted RBP7.25□□□□□ -1.25
LINC00540-201ENST00000611481 FOXD3Q9UJU5 478 aaPredicted RBP7.25□□□□□ -1.25
LINC00540-201ENST00000611481 KIF14Q15058 1648 aa7.25□□□□□ -1.25
LINC00540-201ENST00000611481 MIA2Q96PC5 1412 aa7.25□□□□□ -1.25
LINC00540-201ENST00000611481 A2MP01023 1474 aa7.24□□□□□ -1.25
LINC00540-201ENST00000611481 EP400Q96L91 3159 aa7.24□□□□□ -1.25
LINC00540-201ENST00000611481 CYP11A1P05108 521 aa7.24□□□□□ -1.25
LINC00540-201ENST00000611481 NFICP08651 508 aa7.24□□□□□ -1.25
LINC00540-201ENST00000611481 ZFYVE1Q9HBF4 777 aa7.24□□□□□ -1.25
LINC00540-201ENST00000611481 LRRC4CQ9HCJ2 640 aa7.24□□□□□ -1.25
LINC00540-201ENST00000611481 LATS2Q9NRM7 1088 aa7.24□□□□□ -1.25
LINC00540-201ENST00000611481 ACTL7BQ9Y614 415 aa7.24□□□□□ -1.25
LINC00540-201ENST00000611481 PLXNC1O60486 1568 aa7.24□□□□□ -1.25
LINC00540-201ENST00000611481 SPAG9O60271 1321 aaKnown RBP7.24□□□□□ -1.25
LINC00540-201ENST00000611481 PZPP20742 1482 aa7.24□□□□□ -1.25
LINC00540-201ENST00000611481 METTL12A8MUP2 240 aa7.23□□□□□ -1.25
LINC00540-201ENST00000611481 RAB6AP20340 208 aa7.23□□□□□ -1.25
LINC00540-201ENST00000611481 MAOBP27338 520 aa7.23□□□□□ -1.25
LINC00540-201ENST00000611481 PCDH1Q08174 1060 aa7.23□□□□□ -1.25
LINC00540-201ENST00000611481 ZC3H7BQ9UGR2 993 aaKnown RBP7.23□□□□□ -1.25
LINC00540-201ENST00000611481 SAMD9LQ8IVG5 1584 aa7.23□□□□□ -1.25
LINC00540-201ENST00000611481 BCL9LQ86UU0 1499 aa7.23□□□□□ -1.25
LINC00540-201ENST00000611481 SCAF11Q99590 1463 aaKnown RBP7.23□□□□□ -1.25
LINC00540-201ENST00000611481 BLMP54132 1417 aaPredicted RBP7.22□□□□□ -1.25
LINC00540-201ENST00000611481 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP7.22□□□□□ -1.25
LINC00540-201ENST00000611481 FAM13AO94988 1023 aa7.22□□□□□ -1.25
LINC00540-201ENST00000611481 NPR3P17342 541 aa7.22□□□□□ -1.25
LINC00540-201ENST00000611481 ZNF765Q7L2R6 523 aa7.22□□□□□ -1.25
LINC00540-201ENST00000611481 DYMQ7RTS9 669 aa7.22□□□□□ -1.25
LINC00540-201ENST00000611481 TXNDC2Q86VQ3 553 aa7.22□□□□□ -1.25
LINC00540-201ENST00000611481 CCDC97Q96F63 343 aaPredicted RBP7.22□□□□□ -1.25
LINC00540-201ENST00000611481 CLEC4MQ9H2X3 399 aaPredicted RBP7.22□□□□□ -1.25
LINC00540-201ENST00000611481 SEMA6CQ9H3T2 930 aa7.22□□□□□ -1.25
LINC00540-201ENST00000611481 ZFYVE28Q9HCC9 887 aa7.22□□□□□ -1.25
LINC00540-201ENST00000611481 CDC42BPBQ9Y5S2 1711 aa7.21□□□□□ -1.25
LINC00540-201ENST00000611481 TIAM1Q13009 1591 aa7.21□□□□□ -1.25
LINC00540-201ENST00000611481 A0A096LPE4 126 aa7.21□□□□□ -1.26
LINC00540-201ENST00000611481 A0A1W2PPZ6 126 aa7.21□□□□□ -1.26
LINC00540-201ENST00000611481 KCNA6P17658 529 aa7.21□□□□□ -1.26
LINC00540-201ENST00000611481 LTKP29376 864 aa7.21□□□□□ -1.26
LINC00540-201ENST00000611481 SF3B2Q13435 895 aaKnown RBP7.21□□□□□ -1.26
LINC00540-201ENST00000611481 MTMR3Q13615 1198 aa7.21□□□□□ -1.26
LINC00540-201ENST00000611481 POU4F3Q15319 338 aa7.21□□□□□ -1.26
LINC00540-201ENST00000611481 ZNF423Q2M1K9 1284 aa7.21□□□□□ -1.26
LINC00540-201ENST00000611481 ACSS3Q9H6R3 686 aa7.21□□□□□ -1.26
LINC00540-201ENST00000611481 RAD18Q9NS91 495 aa7.21□□□□□ -1.26
LINC00540-201ENST00000611481 AHDC1Q5TGY3 1603 aaPredicted RBP7.2□□□□□ -1.26
LINC00540-201ENST00000611481 AKAP4Q5JQC9 854 aa7.2□□□□□ -1.26
LINC00540-201ENST00000611481 CCNJLQ8IV13 435 aa7.2□□□□□ -1.26
LINC00540-201ENST00000611481 DDX54Q8TDD1 881 aaKnown RBP7.2□□□□□ -1.26
LINC00540-201ENST00000611481 FAM105AQ9NUU6 356 aa7.2□□□□□ -1.26
LINC00540-201ENST00000611481 SERPINA10Q9UK55 444 aa7.2□□□□□ -1.26
LINC00540-201ENST00000611481 TRPC5Q9UL62 973 aaPredicted RBP7.2□□□□□ -1.26
LINC00540-201ENST00000611481 SLC5A6Q9Y289 635 aa7.2□□□□□ -1.26
LINC00540-201ENST00000611481 PRDM15P57071 1507 aaPredicted RBP7.2□□□□□ -1.26
LINC00540-201ENST00000611481 DIP2AQ14689 1571 aa7.2□□□□□ -1.26
LINC00540-201ENST00000611481 PRXQ9BXM0 1461 aa7.19□□□□□ -1.26
LINC00540-201ENST00000611481 SSFA2P28290 1259 aa7.19□□□□□ -1.26
LINC00540-201ENST00000611481 ASPAP45381 313 aa7.19□□□□□ -1.26
LINC00540-201ENST00000611481 STK11IPQ8N1F8 1099 aa7.19□□□□□ -1.26
LINC00540-201ENST00000611481 BCL7CQ8WUZ0 217 aaPredicted RBP7.19□□□□□ -1.26
LINC00540-201ENST00000611481 AP4E1Q9UPM8 1137 aa7.19□□□□□ -1.26
LINC00540-201ENST00000611481 CDK11AQ9UQ88 783 aaPredicted RBP7.19□□□□□ -1.26
LINC00540-201ENST00000611481 BIN1O00499 593 aa7.18□□□□□ -1.26
LINC00540-201ENST00000611481 FZD6O60353 706 aa7.18□□□□□ -1.26
LINC00540-201ENST00000611481 PAPLNO95428 1278 aa7.18□□□□□ -1.26
LINC00540-201ENST00000611481 POLR3DP05423 398 aaPredicted RBP7.18□□□□□ -1.26
LINC00540-201ENST00000611481 CTSBP07858 339 aa7.18□□□□□ -1.26
LINC00540-201ENST00000611481 R3HDM1Q15032 1099 aaKnown RBP7.18□□□□□ -1.26
LINC00540-201ENST00000611481 PLCL1Q15111 1095 aa7.18□□□□□ -1.26
LINC00540-201ENST00000611481 OGFOD3Q6PK18 319 aa7.18□□□□□ -1.26
LINC00540-201ENST00000611481 SEZ6L2Q6UXD5 910 aa7.18□□□□□ -1.26
LINC00540-201ENST00000611481 GJD3Q8N144 294 aa7.18□□□□□ -1.26
LINC00540-201ENST00000611481 CORO1BQ9BR76 489 aa7.18□□□□□ -1.26
LINC00540-201ENST00000611481 GSX1Q9H4S2 264 aaPredicted RBP7.18□□□□□ -1.26
LINC00540-201ENST00000611481 LIN7BQ9HAP6 207 aa7.18□□□□□ -1.26
LINC00540-201ENST00000611481 MTMR7Q9Y216 660 aa7.18□□□□□ -1.26
LINC00540-201ENST00000611481 ADGBQ8N7X0 1667 aa7.18□□□□□ -1.26
LINC00540-201ENST00000611481 NCOA2Q15596 1464 aa7.17□□□□□ -1.26
LINC00540-201ENST00000611481 ABCC3O15438 1527 aa7.17□□□□□ -1.26
LINC00540-201ENST00000611481 PREX2Q70Z35 1606 aa7.17□□□□□ -1.26
LINC00540-201ENST00000611481 A0A1W2PP55 124 aa7.17□□□□□ -1.26
LINC00540-201ENST00000611481 GRIA4P48058 902 aa7.17□□□□□ -1.26
LINC00540-201ENST00000611481 HNRNPMP52272 730 aaKnown RBP eCLIP7.17□□□□□ -1.26
LINC00540-201ENST00000611481 SPRED3Q2MJR0 410 aa7.17□□□□□ -1.26
LINC00540-201ENST00000611481 TCF12Q99081 682 aa7.17□□□□□ -1.26
LINC00540-201ENST00000611481 C1GALT1Q9NS00 363 aa7.17□□□□□ -1.26
LINC00540-201ENST00000611481 EID1Q9Y6B2 187 aa7.17□□□□□ -1.26
LINC00540-201ENST00000611481 WASHC2CQ9Y4E1 1318 aa7.17□□□□□ -1.26
LINC00540-201ENST00000611481 CLIP1P30622 1438 aa7.17□□□□□ -1.26
LINC00540-201ENST00000611481 TROQ12816 1431 aaPredicted RBP7.17□□□□□ -1.26
LINC00540-201ENST00000611481 SYCP2Q9BX26 1530 aa7.17□□□□□ -1.26
LINC00540-201ENST00000611481 KDM5AP29375 1690 aaKnown RBP7.16□□□□□ -1.26
LINC00540-201ENST00000611481 FKBP4Q02790 459 aaKnown RBP eCLIP7.16□□□□□ -1.26
LINC00540-201ENST00000611481 ZNF792Q3KQV3 632 aa7.16□□□□□ -1.26
LINC00540-201ENST00000611481 CYP27C1Q4G0S4 372 aa7.16□□□□□ -1.26
LINC00540-201ENST00000611481 GALNT12Q8IXK2 581 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms