RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 HMX1Q9NP08 348 aaPredicted RBP7.78□□□□□ -1.16
CUX1-220ENST00000607092 COPRSQ9NQ92 184 aa7.78□□□□□ -1.16
CUX1-220ENST00000607092 TSHZ2Q9NRE2 1034 aa7.78□□□□□ -1.16
CUX1-220ENST00000607092 ABCF2Q9UG63 623 aa7.78□□□□□ -1.16
CUX1-220ENST00000607092 HERC5Q9UII4 1024 aaKnown RBP7.78□□□□□ -1.16
CUX1-220ENST00000607092 TAOK2Q9UL54 1235 aa7.78□□□□□ -1.16
CUX1-220ENST00000607092 ATRNL1Q5VV63 1379 aa7.78□□□□□ -1.16
CUX1-220ENST00000607092 COL2A1P02458 1487 aaPredicted RBP7.78□□□□□ -1.16
CUX1-220ENST00000607092 TTC28Q96AY4 2481 aa7.78□□□□□ -1.16
CUX1-220ENST00000607092 MROH7-TTC4A0A0A0MT08 1334 aa7.78□□□□□ -1.16
CUX1-220ENST00000607092 TRIM75PA6NK02 468 aa7.77□□□□□ -1.17
CUX1-220ENST00000607092 GNAI3P08754 354 aa7.77□□□□□ -1.17
CUX1-220ENST00000607092 PLCG2P16885 1265 aa7.77□□□□□ -1.17
CUX1-220ENST00000607092 CTGFP29279 349 aa7.77□□□□□ -1.17
CUX1-220ENST00000607092 BTDP43251 543 aa7.77□□□□□ -1.17
CUX1-220ENST00000607092 GORABQ5T7V8 394 aa7.77□□□□□ -1.17
CUX1-220ENST00000607092 CCDC102BQ68D86 513 aa7.77□□□□□ -1.17
CUX1-220ENST00000607092 ATF7IPQ6VMQ6 1270 aa7.77□□□□□ -1.17
CUX1-220ENST00000607092 ERICH6Q7L0X2 663 aa7.77□□□□□ -1.17
CUX1-220ENST00000607092 CERS3Q8IU89 383 aa7.77□□□□□ -1.17
CUX1-220ENST00000607092 CCAR1Q8IX12 1150 aaKnown RBP7.77□□□□□ -1.17
CUX1-220ENST00000607092 ZNF280CQ8ND82 737 aa7.77□□□□□ -1.17
CUX1-220ENST00000607092 SOCS4Q8WXH5 440 aa7.77□□□□□ -1.17
CUX1-220ENST00000607092 SSH1Q8WYL5 1049 aa7.77□□□□□ -1.17
CUX1-220ENST00000607092 XRN2Q9H0D6 950 aaKnown RBP eCLIP7.77□□□□□ -1.175e-8■■■■■ 43.2
CUX1-220ENST00000607092 XPO5Q9HAV4 1204 aaKnown RBP eCLIP7.77□□□□□ -1.173e-8■■■■■ 55.1
CUX1-220ENST00000607092 SMC4Q9NTJ3 1288 aa7.77□□□□□ -1.17
CUX1-220ENST00000607092 RPTORQ8N122 1335 aa7.77□□□□□ -1.17
CUX1-220ENST00000607092 ZNF521Q96K83 1311 aa7.77□□□□□ -1.17
CUX1-220ENST00000607092 MYH13Q9UKX3 1938 aa7.76□□□□□ -1.17
CUX1-220ENST00000607092 RFX7Q2KHR2 1363 aa7.76□□□□□ -1.17
CUX1-220ENST00000607092 GPR75-ASB3A0A0A6YYF3 556 aa7.76□□□□□ -1.17
CUX1-220ENST00000607092 USP17L5A8MUK1 530 aa7.76□□□□□ -1.17
CUX1-220ENST00000607092 GLRX3O76003 335 aaKnown RBP7.76□□□□□ -1.17
CUX1-220ENST00000607092 BAG3O95817 575 aa7.76□□□□□ -1.17
CUX1-220ENST00000607092 ASNSP08243 561 aa7.76□□□□□ -1.17
CUX1-220ENST00000607092 XRCC5P13010 732 aaKnown RBP7.76□□□□□ -1.17
CUX1-220ENST00000607092 ELNP15502 786 aa7.76□□□□□ -1.17
CUX1-220ENST00000607092 PHKA1P46020 1223 aa7.76□□□□□ -1.17
CUX1-220ENST00000607092 MNX1P50219 401 aaPredicted RBP7.76□□□□□ -1.17
CUX1-220ENST00000607092 IRX3P78415 501 aaPredicted RBP7.76□□□□□ -1.17
CUX1-220ENST00000607092 PICALMQ13492 652 aa7.76□□□□□ -1.17
CUX1-220ENST00000607092 PDE3AQ14432 1141 aa7.76□□□□□ -1.17
CUX1-220ENST00000607092 TMED8Q6PL24 325 aaPredicted RBP7.76□□□□□ -1.17
CUX1-220ENST00000607092 PAWRQ96IZ0 340 aaKnown RBP7.76□□□□□ -1.17
CUX1-220ENST00000607092 TRIM34Q9BYJ4 488 aa7.76□□□□□ -1.17
CUX1-220ENST00000607092 SIL1Q9H173 461 aa7.76□□□□□ -1.17
CUX1-220ENST00000607092 TMOD4Q9NZQ9 345 aa7.76□□□□□ -1.17
CUX1-220ENST00000607092 GABRQQ9UN88 632 aa7.76□□□□□ -1.17
CUX1-220ENST00000607092 C19orf81C9J6K1 198 aa7.75□□□□□ -1.17
CUX1-220ENST00000607092 UQCRFS1P1P0C7P4 283 aa7.75□□□□□ -1.17
CUX1-220ENST00000607092 MAPK4P31152 587 aa7.75□□□□□ -1.17
CUX1-220ENST00000607092 CAP2P40123 477 aa7.75□□□□□ -1.17
CUX1-220ENST00000607092 CACNB1Q02641 598 aaPredicted RBP7.75□□□□□ -1.17
CUX1-220ENST00000607092 SPP2Q13103 211 aa7.75□□□□□ -1.17
CUX1-220ENST00000607092 RASGRF1Q13972 1273 aa7.75□□□□□ -1.17
CUX1-220ENST00000607092 LRIT3Q3SXY7 679 aa7.75□□□□□ -1.17
CUX1-220ENST00000607092 SH3D19Q5HYK7 790 aa7.75□□□□□ -1.17
CUX1-220ENST00000607092 ANKRD13CQ8N6S4 541 aa7.75□□□□□ -1.17
CUX1-220ENST00000607092 NUDT12Q9BQG2 462 aa7.75□□□□□ -1.17
CUX1-220ENST00000607092 WDR18Q9BV38 432 aa7.75□□□□□ -1.17
CUX1-220ENST00000607092 PI4KBQ9UBF8 816 aa7.75□□□□□ -1.17
CUX1-220ENST00000607092 MORF4L1Q9UBU8 362 aa7.75□□□□□ -1.17
CUX1-220ENST00000607092 DOCK2Q92608 1830 aa7.75□□□□□ -1.17
CUX1-220ENST00000607092 LAMA3Q16787 3333 aa7.74□□□□□ -1.17
CUX1-220ENST00000607092 A0A1B0GUL7 405 aa7.74□□□□□ -1.17
CUX1-220ENST00000607092 DDTLA6NHG4 134 aaPredicted RBP7.74□□□□□ -1.17
CUX1-220ENST00000607092 DLL1O00548 723 aa7.74□□□□□ -1.17
CUX1-220ENST00000607092 IPO8O15397 1037 aaKnown RBP7.74□□□□□ -1.17
CUX1-220ENST00000607092 HOXA7P31268 230 aaPredicted RBP7.74□□□□□ -1.17
CUX1-220ENST00000607092 MECOMQ03112 1051 aa7.74□□□□□ -1.17
CUX1-220ENST00000607092 SLFN5Q08AF3 891 aa7.74□□□□□ -1.17
CUX1-220ENST00000607092 MTX1Q13505 466 aa7.74□□□□□ -1.17
CUX1-220ENST00000607092 SH3BP5LQ7L8J4 393 aa7.74□□□□□ -1.17
CUX1-220ENST00000607092 FOXP4Q8IVH2 680 aaPredicted RBP7.74□□□□□ -1.17
CUX1-220ENST00000607092 ZFPM1Q8IX07 1006 aa7.74□□□□□ -1.17
CUX1-220ENST00000607092 TEX11Q8IYF3 940 aa7.74□□□□□ -1.17
CUX1-220ENST00000607092 SPATA5Q8NB90 893 aa7.74□□□□□ -1.17
CUX1-220ENST00000607092 GPRC5AQ8NFJ5 357 aa7.74□□□□□ -1.17
CUX1-220ENST00000607092 ARHGAP45Q92619 1136 aa7.74□□□□□ -1.17
CUX1-220ENST00000607092 GDF15Q99988 308 aa7.74□□□□□ -1.17
CUX1-220ENST00000607092 C11orf49Q9H6J7 331 aa7.74□□□□□ -1.17
CUX1-220ENST00000607092 CWC22Q9HCG8 908 aaKnown RBP7.74□□□□□ -1.17
CUX1-220ENST00000607092 RAI14Q9P0K7 980 aa7.74□□□□□ -1.17
CUX1-220ENST00000607092 MGAMO43451 1857 aa7.73□□□□□ -1.17
CUX1-220ENST00000607092 DOCK1Q14185 1865 aa7.73□□□□□ -1.17
CUX1-220ENST00000607092 ZNF316A6NFI3 1004 aaPredicted RBP7.73□□□□□ -1.17
CUX1-220ENST00000607092 SRGAP3O43295 1099 aa7.73□□□□□ -1.17
CUX1-220ENST00000607092 MSCO60682 206 aa7.73□□□□□ -1.17
CUX1-220ENST00000607092 HLA-DOAP06340 250 aa7.73□□□□□ -1.17
CUX1-220ENST00000607092 ZKSCAN1P17029 563 aaPredicted RBP7.73□□□□□ -1.17
CUX1-220ENST00000607092 RGS2P41220 211 aa7.73□□□□□ -1.17
CUX1-220ENST00000607092 HMGCS2P54868 508 aa7.73□□□□□ -1.17
CUX1-220ENST00000607092 BACE1P56817 501 aa7.73□□□□□ -1.17
CUX1-220ENST00000607092 RHBDL3P58872 404 aa7.73□□□□□ -1.17
CUX1-220ENST00000607092 CCNA1P78396 465 aa7.73□□□□□ -1.17
CUX1-220ENST00000607092 G3BP1Q13283 466 aaKnown RBP eCLIP7.73□□□□□ -1.17
CUX1-220ENST00000607092 TDHQ8IZJ6 230 aa7.73□□□□□ -1.17
CUX1-220ENST00000607092 XAGE2Q96GT9 111 aa7.73□□□□□ -1.17
CUX1-220ENST00000607092 NEUROD6Q96NK8 337 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms